ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet114g07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 157 bits (79), Expect = 3e-35 Identities = 109/119 (91%) Strand = Plus / Minus Query: 289 accgggcgagcgcgcggcggatcacctgggcaaggaggctgggggcgctgaggtggggga 348 |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct: 5391729 accgggcgagagcgcggcggagcacctgggcgaggaggctgggggcgctgaggtggggga 5391670 Query: 349 ggtggccctccgtcggcaggggctcgatggtggtgcggccgccgaggtgggccttgagg 407 |||| ||||| ||| | ||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 5391669 ggtgaccctcggtctggaggaactcgacggtggtgcggccgccgaggtgggccttgagg 5391611
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009J13, from chromosome 3, complete sequence Length = 147205 Score = 157 bits (79), Expect = 3e-35 Identities = 109/119 (91%) Strand = Plus / Minus Query: 289 accgggcgagcgcgcggcggatcacctgggcaaggaggctgggggcgctgaggtggggga 348 |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct: 97897 accgggcgagagcgcggcggagcacctgggcgaggaggctgggggcgctgaggtggggga 97838 Query: 349 ggtggccctccgtcggcaggggctcgatggtggtgcggccgccgaggtgggccttgagg 407 |||| ||||| ||| | ||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 97837 ggtgaccctcggtctggaggaactcgacggtggtgcggccgccgaggtgggccttgagg 97779
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 157 bits (79), Expect = 3e-35 Identities = 109/119 (91%) Strand = Plus / Minus Query: 289 accgggcgagcgcgcggcggatcacctgggcaaggaggctgggggcgctgaggtggggga 348 |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct: 5390944 accgggcgagagcgcggcggagcacctgggcgaggaggctgggggcgctgaggtggggga 5390885 Query: 349 ggtggccctccgtcggcaggggctcgatggtggtgcggccgccgaggtgggccttgagg 407 |||| ||||| ||| | ||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 5390884 ggtgaccctcggtctggaggaactcgacggtggtgcggccgccgaggtgggccttgagg 5390826
>dbj|AK070827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064N24, full insert sequence Length = 1487 Score = 157 bits (79), Expect = 3e-35 Identities = 109/119 (91%) Strand = Plus / Minus Query: 289 accgggcgagcgcgcggcggatcacctgggcaaggaggctgggggcgctgaggtggggga 348 |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct: 1154 accgggcgagagcgcggcggagcacctgggcgaggaggctgggggcgctgaggtggggga 1095 Query: 349 ggtggccctccgtcggcaggggctcgatggtggtgcggccgccgaggtgggccttgagg 407 |||| ||||| ||| | ||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 1094 ggtgaccctcggtctggaggaactcgacggtggtgcggccgccgaggtgggccttgagg 1036
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09, complete sequence Length = 153950 Score = 149 bits (75), Expect = 8e-33 Identities = 108/119 (90%) Strand = Plus / Minus Query: 289 accgggcgagcgcgcggcggatcacctgggcaaggaggctgggggcgctgaggtggggga 348 |||||||||| |||||||||| |||||| || |||||||||||||||||||||||||||| Sbjct: 121620 accgggcgagagcgcggcggagcacctgagctaggaggctgggggcgctgaggtggggga 121561 Query: 349 ggtggccctccgtcggcaggggctcgatggtggtgcggccgccgaggtgggccttgagg 407 |||| ||||| ||| | ||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 121560 ggtgaccctcggtctggaggaactcgacggtggtgcggccgccgaggtgggccttgagg 121502
>gb|AY109150.1| Zea mays PCO113685 mRNA sequence Length = 645 Score = 52.0 bits (26), Expect = 0.001 Identities = 34/37 (91%) Strand = Plus / Minus Query: 371 ctcgatggtggtgcggccgccgaggtgggccttgagg 407 ||||| || |||||| ||||||||||||||||||||| Sbjct: 640 ctcgacggcggtgcgnccgccgaggtgggccttgagg 604
>emb|AL732448.6| Mouse DNA sequence from clone RP23-116F12 on chromosome 2, complete sequence Length = 214210 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 aagaaaagatggagatgaaaac 41 |||||||||||||||||||||| Sbjct: 168783 aagaaaagatggagatgaaaac 168762
>gb|AC108413.4| Mus musculus chromosome 8, clone RP23-472M11, complete sequence Length = 174540 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 247 tttcttccctctctctttttt 267 ||||||||||||||||||||| Sbjct: 17804 tttcttccctctctctttttt 17784
>gb|AC010799.15| Homo sapiens chromosome 15, clone RP11-40J8, complete sequence Length = 179508 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 tttcttccctctctctttttt 267 ||||||||||||||||||||| Sbjct: 69154 tttcttccctctctctttttt 69174
>gb|AC163225.4| Mus musculus chromosome 8, clone RP23-319L22, complete sequence Length = 192661 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 247 tttcttccctctctctttttt 267 ||||||||||||||||||||| Sbjct: 86560 tttcttccctctctctttttt 86540
>gb|AC120838.10| Pan troglodytes clone ch251-239a19, complete sequence Length = 150256 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 tttcttccctctctctttttt 267 ||||||||||||||||||||| Sbjct: 17813 tttcttccctctctctttttt 17833
>gb|AC019322.8| Homo sapiens chromosome 15, clone RP11-382B18, complete sequence Length = 175205 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 tttcttccctctctctttttt 267 ||||||||||||||||||||| Sbjct: 20122 tttcttccctctctctttttt 20142
>gb|AC111169.7| Homo sapiens chromosome 15, clone RP11-20D7, complete sequence Length = 129543 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 tttcttccctctctctttttt 267 ||||||||||||||||||||| Sbjct: 33085 tttcttccctctctctttttt 33105
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 aaacttttcttctaacgaaaagaaaagat 29 |||||||||||||||| |||| ||||||| Sbjct: 16697321 aaacttttcttctaactaaaataaaagat 16697349
>gb|AC068448.10| Homo sapiens chromosome 15, clone RP11-624A21, complete sequence Length = 165208 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 247 tttcttccctctctctttttt 267 ||||||||||||||||||||| Sbjct: 147646 tttcttccctctctctttttt 147626
>gb|AC021413.16| Homo sapiens chromosome 15, clone RP11-30N16, complete sequence Length = 199198 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 247 tttcttccctctctctttttt 267 ||||||||||||||||||||| Sbjct: 74572 tttcttccctctctctttttt 74552
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 aaacttttcttctaacgaaaagaaaagat 29 |||||||||||||||| |||| ||||||| Sbjct: 48808 aaacttttcttctaactaaaataaaagat 48836
>emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chromosome 13, complete sequence Length = 183340 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 taaaaatacagaaaagaaata 168 ||||||||||||||||||||| Sbjct: 170520 taaaaatacagaaaagaaata 170540
>gb|AC167970.4| Mus musculus BAC clone RP24-471H15 from chromosome 7, complete sequence Length = 238950 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aaagaaaagatggagatgaa 38 |||||||||||||||||||| Sbjct: 33847 aaagaaaagatggagatgaa 33866
>gb|AC167978.4| Mus musculus BAC clone RP23-72M20 from chromosome 7, complete sequence Length = 214959 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aaagaaaagatggagatgaa 38 |||||||||||||||||||| Sbjct: 168555 aaagaaaagatggagatgaa 168574
>ref|XM_479459.1| Oryza sativa (japonica cultivar-group), mRNA Length = 321 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 ggaggctgggggcgctgaggtggg 345 ||||||||||||||||| |||||| Sbjct: 131 ggaggctgggggcgctggggtggg 154
>gb|AE001387.1| Plasmodium falciparum 3D7 chromosome 2 section 24 of 73 of the complete sequence Length = 15540 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 aaaatacagaaaagaaatac 169 |||||||||||||||||||| Sbjct: 540 aaaatacagaaaagaaatac 521
>gb|AC004760.1| Homo sapiens chromosome 16, cosmid clone 316H7 (LANL), complete sequence Length = 44496 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 333 gcgctgaggtgggggaggtggccc 356 |||| ||||||||||||||||||| Sbjct: 19763 gcgcggaggtgggggaggtggccc 19740
>gb|AC165358.3| Mus musculus BAC clone RP23-122F14 from chromosome 1, complete sequence Length = 223166 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 252 tccctctctcttttttagtgtattttct 279 ||||||| | |||||||||||||||||| Sbjct: 15149 tccctcttttttttttagtgtattttct 15122
>gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, complete sequence Length = 238598 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 attttcttcccagtcttttg 126 |||||||||||||||||||| Sbjct: 182688 attttcttcccagtcttttg 182707
>ref|NM_029274.1| Mus musculus WW domain binding protein 7 (Wbp7), mRNA Length = 8444 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aaagaaaagatggagatgaa 38 |||||||||||||||||||| Sbjct: 1022 aaagaaaagatggagatgaa 1041
>gb|AC117627.16| Mus musculus chromosome 1, clone RP23-116N6, complete sequence Length = 201995 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 tttcttccctctctcttttt 266 |||||||||||||||||||| Sbjct: 76620 tttcttccctctctcttttt 76601
>gb|AC118645.13| Mus musculus chromosome 15, clone RP24-114E9, complete sequence Length = 172076 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 gaaaagaaaagatggagatgaaaa 40 |||||| ||||||||||||||||| Sbjct: 25459 gaaaagtaaagatggagatgaaaa 25482
>gb|AC100727.10| Mus musculus chromosome 1, clone RP24-278K16, complete sequence Length = 170056 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tttcttccctctctcttttt 266 |||||||||||||||||||| Sbjct: 106131 tttcttccctctctcttttt 106150
>gb|AC125396.4| Mus musculus BAC clone RP24-69M4 from chromosome 16, complete sequence Length = 179186 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 tttttagtgtattttctactgcta 286 ||||||||||||||| |||||||| Sbjct: 27529 tttttagtgtattttttactgcta 27552
>gb|AC125527.3| Mus musculus BAC clone RP24-550H17 from chromosome 1, complete sequence Length = 153191 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 252 tccctctctcttttttagtgtattttct 279 ||||||| | |||||||||||||||||| Sbjct: 143454 tccctcttttttttttagtgtattttct 143427
>gb|AC122340.3| Mus musculus BAC clone RP23-354B8 from 15, complete sequence Length = 183991 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 gaaaagaaaagatggagatgaaaa 40 |||||| ||||||||||||||||| Sbjct: 60737 gaaaagtaaagatggagatgaaaa 60714
>gb|AY242112.1| Sus scrofa EWB tyrosine hydroxylase (TH) gene, exon 14 and partial cds; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28397 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23410 ggctgggggggaggaggtgagggaggtggccctccg 23445
>gb|AY242111.1| Sus scrofa H205 tyrosine hydroxylase (TH) gene, exon 14; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28190 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23238 ggctgggggggaggaggtgagggaggtggccctccg 23273
>gb|AY242110.1| Sus scrofa H254 tyrosine hydroxylase (TH) gene, exon 14; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28177 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23241 ggctgggggggaggaggtgagggaggtggccctccg 23276
>gb|AY242109.1| Sus scrofa JWB tyrosine hydroxylase (TH) gene, exon 14; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28188 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23269 ggctgggggggaggaggtgagggaggtggccctccg 23304
>gb|AY242108.1| Sus scrofa LRJ tyrosine hydroxylase (TH) gene, exon 14 and partial cds; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28209 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23290 ggctgggggggaggaggtgagggaggtggccctccg 23325
>gb|AY242107.1| Sus scrofa LW1224 tyrosine hydroxylase (TH) gene, exon 14 and partial cds; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28658 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23538 ggctgggggggaggaggtgagggaggtggccctccg 23573
>gb|AY242106.1| Sus scrofa LW1461 tyrosine hydroxylase (TH) gene, exon 14 and partial cds; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28658 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23538 ggctgggggggaggaggtgagggaggtggccctccg 23573
>gb|AY242105.1| Sus scrofa LW197 tyrosine hydroxylase (TH) gene, exon 14 and partial cds; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28267 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23321 ggctgggggggaggaggtgagggaggtggccctccg 23356
>gb|AY242104.1| Sus scrofa LW209 tyrosine hydroxylase (TH) gene, exon 14 and partial cds; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28684 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23564 ggctgggggggaggaggtgagggaggtggccctccg 23599
>gb|AY242103.1| Sus scrofa LW3 tyrosine hydroxylase (TH) gene, exon 14 and partial cds; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28376 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23390 ggctgggggggaggaggtgagggaggtggccctccg 23425
>gb|AY242102.1| Sus scrofa LW33361 tyrosine hydroxylase (TH) gene, exon 14 and partial cds; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28661 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23541 ggctgggggggaggaggtgagggaggtggccctccg 23576
>gb|AY242101.1| Sus scrofa LW419 tyrosine hydroxylase (TH) gene, exon 14 and partial cds; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28659 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23539 ggctgggggggaggaggtgagggaggtggccctccg 23574
>gb|AY242100.1| Sus scrofa LW463 tyrosine hydroxylase (TH) gene, exon 14 and partial cds; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28649 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23528 ggctgggggggaggaggtgagggaggtggccctccg 23563
>gb|AY242099.1| Sus scrofa M220 tyrosine hydroxylase (TH) gene, exon 14; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28219 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23266 ggctgggggggaggaggtgagggaggtggccctccg 23301
>gb|AY242098.1| Sus scrofa P208 tyrosine hydroxylase (TH) gene, exon 14 and partial cds; preproinsulin (INS) gene, complete cds; and insulin-like growth factor 2 preproprotein (IGF2) gene, complete cds, alternatively spliced Length = 28593 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 325 ggctgggggcgctgaggtgggggaggtggccctccg 360 ||||||||| | |||||| |||||||||||||||| Sbjct: 23474 ggctgggggggaggaggtgagggaggtggccctccg 23509
>gb|AC073349.11| Homo sapiens BAC clone RP11-797H7 from 7, complete sequence Length = 140861 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 tcttccctctctctttttta 268 |||||||||||||||||||| Sbjct: 29259 tcttccctctctctttttta 29278
>emb|AL354862.11| Human DNA sequence from clone RP11-83L6 on chromosome 9 Contains an olfactory receptor pseudsogene, the SYK gene for spleen tyrosine kinase and a CpG island, complete sequence Length = 153954 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tgggggcgctgaggtggggg 347 |||||||||||||||||||| Sbjct: 60897 tgggggcgctgaggtggggg 60916
>emb|AL035456.26|HS1099D15 Human DNA sequence from clone RP5-1099D15 on chromosome 20 Contains the 3' end of a novel gene, the JAG1 gene encoding Jagged 1 (involved in Alagille syndrome), a pseudogene aimilar to DNAJ protein, a CpG island, ESTs, STSs and GSSs, complete sequence Length = 125952 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 taacgaaaagaaaagatgga 32 |||||||||||||||||||| Sbjct: 2366 taacgaaaagaaaagatgga 2347
>emb|CR937046.1|PT147K15 Pan troglodytes chromosome 11 BAC PTB-147K15, complete sequence Length = 197298 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tttcttccctctctcttttt 266 |||||||||||||||||||| Sbjct: 12554 tttcttccctctctcttttt 12573
>gb|AC104411.5| Homo sapiens 3 BAC RP11-555M1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 70499 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ctgaggtgggggaggtggcc 355 |||||||||||||||||||| Sbjct: 61765 ctgaggtgggggaggtggcc 61784
>gb|AC098642.5| Genomic sequence for Mus musculus, clone RP23-270O7, complete sequence Length = 188834 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gctgaggtgggggaggtggc 354 |||||||||||||||||||| Sbjct: 90114 gctgaggtgggggaggtggc 90095
>gb|AC112180.2| Homo sapiens chromosome 5 clone RP11-130F17, complete sequence Length = 166720 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ttttttagtgtattttctac 281 |||||||||||||||||||| Sbjct: 36633 ttttttagtgtattttctac 36652
>gb|AC093295.2| Homo sapiens chromosome 5 clone RP11-535A15, complete sequence Length = 203831 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ttttttagtgtattttctac 281 |||||||||||||||||||| Sbjct: 52769 ttttttagtgtattttctac 52750
>gb|AC021581.10| Homo sapiens chromosome 17, clone RP11-956N15, complete sequence Length = 181607 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tgggggcgctgaggtggggg 347 |||||||||||||||||||| Sbjct: 87526 tgggggcgctgaggtggggg 87507
>gb|AC010612.8| Homo sapiens chromosome 5 clone CTB-91C24, complete sequence Length = 139873 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tgggggcgctgaggtggggg 347 |||||||||||||||||||| Sbjct: 50173 tgggggcgctgaggtggggg 50154
>gb|AC008558.7|AC008558 Homo sapiens chromosome 5 clone CTC-531G16, complete sequence Length = 210532 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 tgccattttcttcccagtct 122 |||||||||||||||||||| Sbjct: 117297 tgccattttcttcccagtct 117316
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 ggaggctgggggcgctgaggtggg 345 ||||||||||||||||| |||||| Sbjct: 28314495 ggaggctgggggcgctggggtggg 28314518
>gb|AC006111.4| Homo sapiens chromosome 16 clone RP11-461A8, complete sequence Length = 190814 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 gcgctgaggtgggggaggtggccc 356 |||| ||||||||||||||||||| Sbjct: 175495 gcgcggaggtgggggaggtggccc 175518
>gb|AC112907.7| Homo sapiens 3 BAC RP11-573D15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 132875 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gtaaaaatacagaaaagaaa 166 |||||||||||||||||||| Sbjct: 28394 gtaaaaatacagaaaagaaa 28413
>gb|AC019047.7| Homo sapiens BAC clone RP11-83N2 from 2, complete sequence Length = 165007 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cttttttagtgtattttcta 280 |||||||||||||||||||| Sbjct: 41639 cttttttagtgtattttcta 41620
>gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H3 map 14q31, complete sequence Length = 190773 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 cctctctcttttttagtgtatttt 277 |||||||||||||| ||||||||| Sbjct: 162769 cctctctctttttttgtgtatttt 162746
>dbj|AB182318.1| Mus musculus Mll2 mRNA for mixed lineage leukemia 2, complete cds Length = 8444 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aaagaaaagatggagatgaa 38 |||||||||||||||||||| Sbjct: 1022 aaagaaaagatggagatgaa 1041
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 ggaggctgggggcgctgaggtggg 345 ||||||||||||||||| |||||| Sbjct: 40058 ggaggctgggggcgctggggtggg 40081
>gb|AC149609.5| Mus musculus BAC clone RP23-442K4 from 7, complete sequence Length = 196912 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 aaagaaaagatggagatgaa 38 |||||||||||||||||||| Sbjct: 111118 aaagaaaagatggagatgaa 111099
>gb|AC154540.2| Mus musculus BAC clone RP23-452G1 from chromosome 16, complete sequence Length = 171663 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 tttttagtgtattttctactgcta 286 ||||||||||||||| |||||||| Sbjct: 168743 tttttagtgtattttttactgcta 168766
>emb|AL603682.36| Mouse DNA sequence from clone RP23-235J5 on chromosome 11, complete sequence Length = 211680 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gctgaggtgggggaggtggc 354 |||||||||||||||||||| Sbjct: 15365 gctgaggtgggggaggtggc 15384
>emb|AL663072.12| Mouse DNA sequence from clone RP23-22J3 on chromosome X, complete sequence Length = 249536 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gggcgctgaggtgggggagg 350 |||||||||||||||||||| Sbjct: 171274 gggcgctgaggtgggggagg 171255 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,175,200 Number of Sequences: 3902068 Number of extensions: 5175200 Number of successful extensions: 129982 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 129677 Number of HSP's gapped (non-prelim): 305 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
