>YK61_CAEEL (P34340) Putative cuticle collagen C29E4.1|
          Length = 305

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 397 APACPGVYGKGAYPGYAGQLLVDGATGASYN 305
           AP  PG  G+ AYPG  G+    GA G   N
Sbjct: 242 APGTPGSNGRDAYPGQPGKAGEPGAVGKDAN 272

>PRDM1_HUMAN (O75626) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1) (Positive regulatory
           domain I-binding factor 1) (PRDI-binding factor 1)
           (PRDI-BF1)
          Length = 789

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -1

Query: 382 GVYGKGAYPGYAGQLLVDGATGASYNAHGAHGRKYLLP 269
           G  G G+YPGYA    +  A   SYNAH     K+LLP
Sbjct: 346 GTEGLGSYPGYAPLPHLPPAFIPSYNAHYP---KFLLP 380



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 333 TSSWPAYPGYAPLPYTP 383
           T    +YPGYAPLP+ P
Sbjct: 347 TEGLGSYPGYAPLPHLP 363

>PRDM1_MOUSE (Q60636) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1)
          Length = 856

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -1

Query: 382 GVYGKGAYPGYAGQLLVDGATGASYNAHGAHGRKYLLP 269
           G  G G+YPGYA    +  A   SYNAH     K+LLP
Sbjct: 414 GSEGLGSYPGYAPAPHLPPAFIPSYNAHYP---KFLLP 448

>BETT_ECOLI (P0ABC9) High-affinity choline transport protein|
          Length = 677

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 106 IYTYMHYSTTSCTQYSLARWAASGFDSLHLSLPLCRRTSPTPAWSRR 246
           ++T  HY  T  + Y+L   A  G+ S   +LPL  R++  P + +R
Sbjct: 140 VWTLFHYGLTGWSMYALMGMAL-GYFSYRYNLPLTIRSALYPIFGKR 185

>BETT_ECO57 (P0ABD0) High-affinity choline transport protein|
          Length = 677

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 106 IYTYMHYSTTSCTQYSLARWAASGFDSLHLSLPLCRRTSPTPAWSRR 246
           ++T  HY  T  + Y+L   A  G+ S   +LPL  R++  P + +R
Sbjct: 140 VWTLFHYGLTGWSMYALMGMAL-GYFSYRYNLPLTIRSALYPIFGKR 185

>SCRB_KLEPN (P27217) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) (Sucrase)|
           (Invertase)
          Length = 465

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 382 GVYGKGAYPGYAGQLLVDGATGASY 308
           GV     +PGY GQL+  GAT  ++
Sbjct: 430 GVMSSRFFPGYPGQLIFSGATPVAF 454

>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)|
          Length = 1758

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 394  PACPGVYGKGAYPGYAGQLLVDGATG 317
            P  PG+ GK  +PG  GQ    G +G
Sbjct: 1276 PGAPGLQGKDGFPGLPGQKGESGLSG 1301

>SYK_RICPR (Q9ZDF8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 528

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 63  YLAREDPNTSSYTNYLHVYALQYY 134
           Y  +  PNTS+Y ++L  +A++YY
Sbjct: 403 YEPKATPNTSTYLDHLTEFAIRYY 426

>COBB_HALSA (Q9HPL7) Probable cobyrinic acid A,C-diamide synthase|
          Length = 441

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -1

Query: 394 PACPGVYGKGAYPGYAGQLLVDGATGASYNAHGAHG 287
           PAC GVY  G YP      L D     +  A  A G
Sbjct: 281 PACDGVYLPGGYPELHTDALADAPALDTLGARAADG 316

>GRP1_HORVU (P17816) Glycine-rich cell wall structural protein precursor|
          Length = 200

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 382 GVYGKGAYPGYAGQLLVDGATGASYNAHGAHG 287
           G  G G YPG+ G+       G  Y+ HG  G
Sbjct: 99  GYGGGGGYPGHGGEGGGGYGGGGGYHGHGGEG 130

>LEG3_RABIT (P47845) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)|
           (IgE-binding protein) (35 kDa lectin)
           (Carbohydrate-binding protein 35) (CBP 35)
           (Laminin-binding protein) (Lectin L-29)
          Length = 241

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 385 PGVYGKGAYPGYAGQLLVDGATGASYNAHGAHG 287
           PG    GAYPG+A       A    Y   GAHG
Sbjct: 36  PGAAYPGAYPGHAPGAYPGQAPPGPYPGPGAHG 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,663,547
Number of Sequences: 219361
Number of extensions: 784337
Number of successful extensions: 2636
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2634
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)