>gb|DQ175992.1| Hordeum vulgare subsp. vulgare clone 65-22A-RB flanking T-DNA
           insertion sequence
          Length = 267

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                     
Query: 1   aaaataattgtcttcaattttatactagctttagtataaaattatactaagtttaaga 58
           |||||||||||||| || ||| | |||||| |||||||||||||||||||| ||||||
Sbjct: 135 aaaataattgtctt-aactttgttctagctctagtataaaattatactaagcttaaga 79

>gb|AF509746.1| Hordeum vulgare subsp. spontaneum OSU6 receptor-like kinase gene,
            complete cds
          Length = 2513

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1    aaaataattgtcttcaattttatactagctttagtataaaattatactaagtttaaga 58
            ||||||||||||| ||| ||| |||||||| |||||||||||| || |||| ||||||
Sbjct: 1325 aaaataattgtct-caactttgtactagctctagtataaaattgtattaagcttaaga 1381

>gb|AF509745.1| Hordeum vulgare subsp. vulgare Steptoe receptor-like kinase gene,
            complete cds
          Length = 2550

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1    aaaataattgtcttcaattttatactagctttagtataaaattatactaagtttaaga 58
            ||||||||||||| ||| ||| |||||||| |||||||||||| || |||| ||||||
Sbjct: 1350 aaaataattgtct-caactttgtactagctctagtataaaattgtattaagcttaaga 1406

>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 16     aattttatactagctttagtataaaattatactaag 51
              |||||| || ||||||||||||||| ||||||||||
Sbjct: 117170 aattttgtattagctttagtataaagttatactaag 117135

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                      
Query: 336     tcgccgtccttgtgctggccgaacttgtgcacggcgagg 374
               |||||||||||| ||  |||||||| |||||||||||||
Sbjct: 3090772 tcgccgtccttgcgcctgccgaactcgtgcacggcgagg 3090810



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 200     cggtcaaagcttatcgcgac 219
               ||||||||||||||||||||
Sbjct: 3090630 cggtcaaagcttatcgcgac 3090649

>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0041E11
          Length = 146335

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 336   tcgccgtccttgtgctggccgaacttgtgcacggcgagg 374
             |||||||||||| ||  |||||||| |||||||||||||
Sbjct: 34560 tcgccgtccttgcgcctgccgaactcgtgcacggcgagg 34598



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   cggtcaaagcttatcgcgac 219
             ||||||||||||||||||||
Sbjct: 34418 cggtcaaagcttatcgcgac 34437

>dbj|AK106273.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G11, full
           insert sequence
          Length = 1336

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 336 tcgccgtccttgtgctggccgaacttgtgcacggcgagg 374
           |||||||||||| ||  |||||||| |||||||||||||
Sbjct: 923 tcgccgtccttgcgcctgccgaactcgtgcacggcgagg 885



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  cggtcaaagcttatcgcgac 219
            ||||||||||||||||||||
Sbjct: 1065 cggtcaaagcttatcgcgac 1046

>dbj|AK106334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-F11, full
           insert sequence
          Length = 1256

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 336 tcgccgtccttgtgctggccgaacttgtgcacggcgagg 374
           |||||||||||| ||  |||||||| |||||||||||||
Sbjct: 847 tcgccgtccttgcgcctgccgaactcgtgcacggcgagg 809

>dbj|AK070330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049H21, full
           insert sequence
          Length = 1264

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 336 tcgccgtccttgtgctggccgaacttgtgcacggcgagg 374
           |||||||||||| ||  |||||||| |||||||||||||
Sbjct: 927 tcgccgtccttgcgcctgccgaactcgtgcacggcgagg 889



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  cggtcaaagcttatcgcgac 219
            ||||||||||||||||||||
Sbjct: 1069 cggtcaaagcttatcgcgac 1050

>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0433F09
          Length = 150150

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 336   tcgccgtccttgtgctggccgaacttgtgcacggcgagg 374
             |||||||||||| ||  |||||||| |||||||||||||
Sbjct: 58812 tcgccgtccttgcgcctgccgaactcgtgcacggcgagg 58850



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   cggtcaaagcttatcgcgac 219
             ||||||||||||||||||||
Sbjct: 58670 cggtcaaagcttatcgcgac 58689

>gb|AC091436.3| Felis catus clone RP86-87J17, complete sequence
          Length = 149907

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 3    aataattgtcttcaattttata 24
            ||||||||||||||||||||||
Sbjct: 4945 aataattgtcttcaattttata 4966

>gb|AC144695.3| Felis catus clone RP86-311E1, complete sequence
          Length = 11859

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 3    aataattgtcttcaattttata 24
            ||||||||||||||||||||||
Sbjct: 7186 aataattgtcttcaattttata 7207

>gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome 17, complete sequence
          Length = 206456

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 37     taaaattatactaagtttaag 57
              |||||||||||||||||||||
Sbjct: 139549 taaaattatactaagtttaag 139569

>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17,
             complete sequence
          Length = 202430

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    taaaattatactaagtttaag 57
             |||||||||||||||||||||
Sbjct: 71725 taaaattatactaagtttaag 71745

>gb|AC079907.25| Homo sapiens 12q BAC RP11-554E23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 184840

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     ataattgtcttcaattttata 24
             |||||||||||||||||||||
Sbjct: 82446 ataattgtcttcaattttata 82466

>emb|AJ621582.1| Heteropogon contortus partial mRNA for NADP-dependant malate
           dehydrogenase (nadp-MDH gene)
          Length = 1243

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 323 ctccgccgtggcctcgccgtccttg 347
           ||||||||||||| |||||||||||
Sbjct: 153 ctccgccgtggccacgccgtccttg 129

>emb|AJ512376.1|TQU512376 Themeda quadrivalvis partial mRNA for NADP-dependant malate
           dehydrogenase (nadp-mdh gene)
          Length = 1248

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 323 ctccgccgtggcctcgccgtccttg 347
           ||||||||||||| |||||||||||
Sbjct: 153 ctccgccgtggccacgccgtccttg 129

>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 1       aaaataattgtcttcaatttt 21
               |||||||||||||||||||||
Sbjct: 1811338 aaaataattgtcttcaatttt 1811358

>gb|AC119982.6| Mus musculus chromosome 19, clone RP24-498L9, complete sequence
          Length = 177924

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tttaagaggactgaaggagt 71
             ||||||||||||||||||||
Sbjct: 71281 tttaagaggactgaaggagt 71300

>gb|AC122287.4| Mus musculus BAC clone RP23-253A15 from 1, complete sequence
          Length = 226926

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    catcatacgtacacaagttg 128
              ||||||||||||||||||||
Sbjct: 103930 catcatacgtacacaagttg 103949

>gb|AC118724.18| Mus musculus, clone RP24-160H20, complete sequence
          Length = 197860

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     tttaagaggactgaaggagt 71
              ||||||||||||||||||||
Sbjct: 194671 tttaagaggactgaaggagt 194690

>gb|AC149546.14| Medicago truncatula clone mth2-70o13, complete sequence
          Length = 124127

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     aataattgtcttcaatttta 22
             ||||||||||||||||||||
Sbjct: 50527 aataattgtcttcaatttta 50546

>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 19   tttatactagctttagtataaaattatactaagtttaaga 58
            ||||||||| || ||||||||| || || |||||||||||
Sbjct: 8296 tttatactaactctagtataaagttgtattaagtttaaga 8335

>gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3, complete sequence
          Length = 174133

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     taaaattatactaagtttaa 56
              ||||||||||||||||||||
Sbjct: 101577 taaaattatactaagtttaa 101558

>gb|AC095041.3| Homo sapiens BAC clone RP11-84H6 from 4, complete sequence
          Length = 176008

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      ataattgtcttcaattttat 23
              ||||||||||||||||||||
Sbjct: 118510 ataattgtcttcaattttat 118491

>gb|AC108205.5| Homo sapiens BAC clone RP11-140N6 from 4, complete sequence
          Length = 132623

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     ataattgtcttcaattttat 23
             ||||||||||||||||||||
Sbjct: 68731 ataattgtcttcaattttat 68712

>gb|AF216699.1|AF216699 Taenia crassiceps mitochondrion, complete genome
          Length = 13503

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   ttagtataaaattatactaa 50
            ||||||||||||||||||||
Sbjct: 8738 ttagtataaaattatactaa 8719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,906,252
Number of Sequences: 3902068
Number of extensions: 2906252
Number of successful extensions: 58071
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57981
Number of HSP's gapped (non-prelim): 89
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)