ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet114a10 |
|---|---|
| Clone Library Name | barley_pub |
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 34.3 bits (77), Expect = 0.18 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = +2 Query: 323 AQATRGGRGDPDPQW--GREDPGGRDRFPTSHGRPGASAA 436 A G +GDP PQ G++ P G FP G PGA A Sbjct: 1001 AAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGA 1040
>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)| Length = 911 Score = 34.3 bits (77), Expect = 0.18 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = +2 Query: 323 AQATRGGRGDPDPQW--GREDPGGRDRFPTSHGRPGASAA 436 A G +GDP PQ G++ P G FP G PGA A Sbjct: 768 AAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQGA 807
>OSTP_CHICK (P23498) Osteopontin precursor (Bone sialoprotein-1) (Secreted| phosphoprotein 1) (SPP-1) Length = 264 Score = 33.9 bits (76), Expect = 0.23 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Frame = +3 Query: 15 DEYMELSYTRHKLHQVHINTTIYNHHEEEQG-----PTTDENKQ*KNDV--HPCYPRLPA 173 ++Y S+ H+ HQ H+++ H ++ Q T + + DV P +P +P+ Sbjct: 33 EKYDPRSHHTHRYHQDHVDSQSQEHLQQTQNDLASLQQTHYSSEENADVPEQPDFPDIPS 92 Query: 174 WNQSEIDDEEETPNST 221 +Q +DD+++ N + Sbjct: 93 KSQEAVDDDDDDDNDS 108
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 33.9 bits (76), Expect = 0.23 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = +2 Query: 323 AQATRGGRGDPDPQW--GREDPGGRDRFPTSHGRPGASAA 436 A G +GDP PQ G++ P G FP G PGA A Sbjct: 999 AAGKEGAKGDPGPQGISGKDGPAGIRGFPGERGLPGAQGA 1038
>COKA1_HUMAN (Q9P218) Collagen alpha-1(XX) chain precursor| Length = 1329 Score = 33.1 bits (74), Expect = 0.40 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%) Frame = +2 Query: 254 CTCNSRTPGETGSA*LQSWWRLRA----QATRGGRGDPDP--QWGREDPGGRDRFPTSHG 415 C+C+S TPG G Q G RG+P P Q G E PGG+ P + G Sbjct: 1071 CSCSSETPGPPGPQGPPGLPGRNGTPGEQGFPGPRGEPGPPGQMGPEGPGGQQGSPGTQG 1130 Query: 416 R 418 R Sbjct: 1131 R 1131
>SPS1_CRAPL (O04932) Sucrose-phosphate synthase 1 (EC 2.4.1.14)| (UDP-glucose-fructose-phosphate glucosyltransferase 1) Length = 1054 Score = 32.0 bits (71), Expect = 0.88 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Frame = +3 Query: 153 CYPRLPAWNQSEIDDEEETPNSTTS---R*RLNITLHVPATHEHQVKQGRPSCNRGGGSG 323 C PR P W ++E DD+E + + + S R +I+L++ + + + R +GGGS Sbjct: 666 CKPRQPRWLRNEEDDDENSESDSPSDSLRDIQDISLNLKFSFDGDKNESR---EKGGGS- 721 Query: 324 LRRHEEDVGIQIHN 365 H +D +I N Sbjct: 722 ---HPDDRASKIEN 732
>SYD_EHRCJ (Q3YRF1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 32.0 bits (71), Expect = 0.88 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = +1 Query: 70 IQQYTIIMRKSRVRLRTRTNNKRTMSILAIPGCRPGTNPRSMMKKKLQIAQ 222 IQ T I R S+ + +N K+ M + AIP + NPRS K++ A+ Sbjct: 299 IQDVTEIFRDSQFNI-FNSNIKKGMVVRAIPAPKTANNPRSFFDNKIEFAK 348
>NFIX_MESAU (P13623) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 441 Score = 30.4 bits (67), Expect = 2.6 Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 29/140 (20%) Frame = +3 Query: 63 HINTTI--------YNHHEEEQGPTTDENKQ*KNDVHP----------CYPRLPAWNQSE 188 HI TI Y H E G + N+Q D+ P C+ WN +E Sbjct: 167 HIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTSGVWNVTE 226 Query: 189 IDDEEETPNSTTSR*RLNIT-LHVPATHE-HQVKQGRPSCNRGGGSGLRRH--------- 335 + +TP +T S ++ L P+ + +QV GR S + + Sbjct: 227 LVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEM 286 Query: 336 EEDVGIQIHNGDGRIRAAGT 395 E V + G GR AAG+ Sbjct: 287 ESPVDDVFYPGTGRSPAAGS 306
>NFIX_HUMAN (Q14938) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 502 Score = 30.4 bits (67), Expect = 2.6 Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 29/140 (20%) Frame = +3 Query: 63 HINTTI--------YNHHEEEQGPTTDENKQ*KNDVHP----------CYPRLPAWNQSE 188 HI TI Y H E G + N+Q D+ P C+ WN +E Sbjct: 167 HIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTSGVWNVTE 226 Query: 189 IDDEEETPNSTTSR*RLNIT-LHVPATHE-HQVKQGRPSCNRGGGSGLRRH--------- 335 + +TP +T S ++ L P+ + +QV GR S + + Sbjct: 227 LVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEM 286 Query: 336 EEDVGIQIHNGDGRIRAAGT 395 E V + G GR AAG+ Sbjct: 287 ESPVDDVFYPGTGRSPAAGS 306
>GLI3_CHICK (P55879) Zinc finger protein GLI3 (Fragment)| Length = 663 Score = 30.4 bits (67), Expect = 2.6 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 8/109 (7%) Frame = +3 Query: 72 TTIYNHHEEEQGPTTDENKQ*KNDVHPCYPRL--------PAWNQSEIDDEEETPNSTTS 227 +++ H + GP K+ +NDVHP P L A S++ +E NSTT Sbjct: 376 SSLRKHVKTVHGPDAHVTKKQRNDVHPRPPPLKENGDNEASAKQSSKVSEESPEANSTTR 435 Query: 228 R*RLNITLHVPATHEHQVKQGRPSCNRGGGSGLRRHEEDVGIQIHNGDG 374 + + T + Q P GG S +G +N G Sbjct: 436 SMEDCLQVKTIKTENSVMCQSSP----GGQSSCSSEPSPLGSTNNNDSG 480
>SYD_EHRRW (Q5HAL5) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 30.4 bits (67), Expect = 2.6 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +1 Query: 70 IQQYTIIMRKSRVRLRTRTNNKRTMSILAIPGCRPGTNPRSMMKKKLQIAQ 222 IQ T I R S ++ +N K+ M + AIP NPRS K++ A+ Sbjct: 299 IQDVTEIFRDSEFKI-FNSNIKQGMVVRAIPAPNTAHNPRSFFDSKIEFAK 348
>SYD_EHRRG (Q5FG09) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 30.4 bits (67), Expect = 2.6 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +1 Query: 70 IQQYTIIMRKSRVRLRTRTNNKRTMSILAIPGCRPGTNPRSMMKKKLQIAQ 222 IQ T I R S ++ +N K+ M + AIP NPRS K++ A+ Sbjct: 299 IQDVTEIFRDSEFKI-FNSNIKQGMVVRAIPAPNTAHNPRSFFDSKIEFAK 348
>BICD2_HUMAN (Q8TD16) Cytoskeleton-like bicaudal D protein homolog 2| Length = 824 Score = 30.0 bits (66), Expect = 3.3 Identities = 21/63 (33%), Positives = 26/63 (41%) Frame = +2 Query: 230 LTS*YHFTCTCNSRTPGETGSA*LQSWWRLRAQATRGGRGDPDPQWGREDPGGRDRFPTS 409 L + YH C CN+ TP R+ R G+G GR PGGR P + Sbjct: 534 LANLYHHVCMCNNETPN-----------RVMLDYYREGQGGA----GRTSPGGRTS-PEA 577 Query: 410 HGR 418 GR Sbjct: 578 RGR 580
>TR95_HUMAN (Q9Y2X0) Thyroid hormone receptor-associated protein complex 95 kDa| component (Trap95) (Thyroid hormone receptor-associated protein 5) (Vitamin D3 receptor-interacting protein complex component DRIP92) Length = 877 Score = 30.0 bits (66), Expect = 3.3 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 16/55 (29%) Frame = -3 Query: 406 CRESVPAAR----------ILPSPLWI----WIPTSSSC--RLSPEPPPRLQLGR 290 CR+ PA+ +LPS L I W+P S RL P+ P RLQ GR Sbjct: 700 CRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGR 754
>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid| X receptor-interacting protein 13) (RIP13) Length = 2453 Score = 30.0 bits (66), Expect = 3.3 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Frame = +3 Query: 93 EEEQGPTTDENKQ*KNDVHPCYPRLPAWNQSEIDDEEETPNSTTSR*RLNITLHVPATHE 272 EE++ T++ ++ K D E DD+E++ +T + R T P E Sbjct: 518 EEDKAEKTEKKEEEKKD------------DEEKDDKEDSKETTKEKDRTEATAEEPEERE 565 Query: 273 HQVKQGRPSCN-RGGGSG 323 +GR + N +G G G Sbjct: 566 QVTPRGRKTANSQGRGKG 583
>NFIX_MOUSE (P70257) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 488 Score = 30.0 bits (66), Expect = 3.3 Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 29/140 (20%) Frame = +3 Query: 63 HINTTI--------YNHHEEEQGPTTDENKQ*KNDVHP----------CYPRLPAWNQSE 188 HI TI Y H E G + N+Q D+ P C+ WN +E Sbjct: 167 HIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTSGVWNVTE 226 Query: 189 IDDEEETPNSTTSR*RLNIT-LHVPATHE-HQVKQGRPSCNRGGGSGLRRH--------- 335 + +TP +T S ++ L P+ + +QV GR S + + Sbjct: 227 LVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEM 286 Query: 336 EEDVGIQIHNGDGRIRAAGT 395 E V + G GR AAG+ Sbjct: 287 ESPVDDVFYPGTGRSPAAGS 306
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +3 Query: 252 HVPATHEHQVKQGRPSCNRGGGSGLRRHEEDVGIQIHNGDGRIRAAGTDSRHHTAA 419 H + H H QGR +R G SG R + +GDG + + SRHH A+ Sbjct: 2811 HSGSHHSHTTSQGRSDASR-GQSGSRSASRTTRNEEQSGDG---SRHSGSRHHEAS 2862 Score = 29.6 bits (65), Expect = 4.4 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = +3 Query: 237 LNITLHVPATHEHQVKQGRPSCNRGGGSGLRRHEEDVGIQIHNGDGRIRAAGTDSRHHTA 416 +N + H + H H QGR + G SG R + +GDG R +G SRHH A Sbjct: 536 VNRSGHSGSHHSHTTSQGRSDASH-GQSGSRSASRQTRNEEQSGDG-TRHSG--SRHHEA 591 Query: 417 AQE 425 + + Sbjct: 592 SSQ 594
>TRBM_BOVIN (P06579) Thrombomodulin (TM) (Fetomodulin) (CD141 antigen)| (Fragment) Length = 356 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Frame = +2 Query: 335 RGGRGDPDPQWGREDPG----GRDRFPTSHGRPG-ASAATCKLAQDAPM 466 RG RG+ + +W RE PG G +R H G A A+ C DA + Sbjct: 1 RGARGETEGRWSREAPGAWACGVERGGCQHECKGSAGASNCLCPADAAL 49
>ERCC5_MOUSE (P35689) DNA-repair protein complementing XP-G cells homolog| (Xeroderma pigmentosum group G-complementing protein homolog) (DNA excision repair protein ERCC-5) Length = 1170 Score = 29.6 bits (65), Expect = 4.4 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 8/87 (9%) Frame = +3 Query: 63 HINTTIYNHHEEEQGPTTDENKQ*KNDVHP--------CYPRLPAWNQSEIDDEEETPNS 218 H++ + PTT + D+HP YP N S + ++ET Sbjct: 520 HVSGVLSEREPTLAPPTTRTHSDQGIDIHPEDPELQNGLYPLETKCNSSRLSSDDETEGG 579 Query: 219 TTSR*RLNITLHVPATHEHQVKQGRPS 299 + T+HVPA ++ PS Sbjct: 580 QNPAPKACSTVHVPAEAMSNLENALPS 606
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 29.6 bits (65), Expect = 4.4 Identities = 35/153 (22%), Positives = 52/153 (33%), Gaps = 21/153 (13%) Frame = +3 Query: 15 DEYMELSYTRHKLHQVHINTTIYNHHEEEQGPTTDENKQ*KNDVHPCYPRLPAWNQSEID 194 D+ E T HQ H + H EEE DE ++D H + + + + Sbjct: 380 DDDDEGDSTESDRHQAHRHR---GHREEEDEDDDDEGDSTESDHHQAHRHRGHREEEDEE 436 Query: 195 DEEETPNSTTSR*RLNITLHVPATHE-HQVKQGRPSCNRGGGS-----GLRRHEEDVG-- 350 D++E ++ + R H H H ++ + G G R HEED G Sbjct: 437 DDDEGDSTESDR-------HQAHRHRGHGEEEDEDDDDEGEHHHVPHRGHRGHEEDDGGD 489 Query: 351 -------------IQIHNGDGRIRAAGTDSRHH 410 H G G+ A T HH Sbjct: 490 DDDGDDSTENGHQAHRHQGHGKEEAEVTSDEHH 522 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/71 (26%), Positives = 30/71 (42%) Frame = +3 Query: 15 DEYMELSYTRHKLHQVHINTTIYNHHEEEQGPTTDENKQ*KNDVHPCYPRLPAWNQSEID 194 D+ E T HQ H + H EEE DE ++D H + + + D Sbjct: 267 DDDDEGDSTESDRHQAHRHR---GHREEEDEDDDDEGDSTESDRHQAHRHRGHREEEDDD 323 Query: 195 DEEETPNSTTS 227 D+++ +ST S Sbjct: 324 DDDDEGDSTES 334
>MANA_RHOMR (P49425) Mannan endo-1,4-beta-mannosidase (EC 3.2.1.78)| (Endo-(1,4)-beta-mannanase) Length = 1021 Score = 29.6 bits (65), Expect = 4.4 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Frame = +3 Query: 93 EEEQGPTTDENKQ*KNDVHPCYPRLPAWNQSEIDDEEETPNSTTSR*RLNITLHVPATHE 272 E EQ P +++Q + DV R A+ +D P R L + HVPA + Sbjct: 160 ELEQQPVEAQHQQQEGDVRIGKRRQNAFAPPALDHVHGGPGRL-QRHGLAVERHVPAVQQ 218 Query: 273 HQ--VKQGRPSCNRGGGSGL 326 HQ V++GR + G GL Sbjct: 219 HQQRVQRGRQQIDHVLGHGL 238
>PE2R1_CANFA (Q9BGL8) Prostaglandin E2 receptor, EP1 subtype (Prostanoid EP1| receptor) (PGE receptor, EP1 subtype) Length = 403 Score = 29.6 bits (65), Expect = 4.4 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 8/74 (10%) Frame = +2 Query: 284 TGSA*LQSWWRLRAQATRGGRGDPDPQ--WGREDPGGRDRFPTSH------GRPGASAAT 439 +G A L++ WR R R PD + WG P +S G PG +A Sbjct: 228 SGLALLRARWRRRRSRRRPQACGPDGRRHWGARAPRSASASSSSSVASVPGGSPGRGSAR 287 Query: 440 CKLAQDAPMTGQLL 481 A D M GQL+ Sbjct: 288 RARAHDVEMVGQLV 301
>HXA10_HUMAN (P31260) Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL)| Length = 393 Score = 29.3 bits (64), Expect = 5.7 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%) Frame = -3 Query: 373 PSPLWIWIPTSSSCRL----SPEPPPRLQ 299 PSP+ +W+ SCR+ P PPP+ Q Sbjct: 95 PSPIDLWLDAPRSCRMEPPDGPPPPPQQQ 123
>COT1_BOVIN (Q9TTR8) COUP transcription factor 1 (COUP-TF1) (COUP-TF I)| Length = 424 Score = 29.3 bits (64), Expect = 5.7 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +2 Query: 323 AQATRGGRGDPDPQWGREDPGGRDRFPTSHGRPGASA 433 AQA RGG G Q ++ G P + G+PGA A Sbjct: 27 AQAARGGGGGAGEQQQQQAGSGAPHTPQTPGQPGAPA 63
>ATHB4_ARATH (P92953) Homeobox-leucine zipper protein ATHB-4 (HD-ZIP protein| ATHB-4) Length = 318 Score = 29.3 bits (64), Expect = 5.7 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 5/67 (7%) Frame = +3 Query: 189 IDDEEE-----TPNSTTSR*RLNITLHVPATHEHQVKQGRPSCNRGGGSGLRRHEEDVGI 353 +D EEE +PNS S N A + + R SC+RGGGSG +ED G Sbjct: 99 VDLEEEAAVVSSPNSAVSSLSGNKRDLAVARGGDENEAERASCSRGGGSG-GSDDEDGG- 156 Query: 354 QIHNGDG 374 NGDG Sbjct: 157 ---NGDG 160
>PSS_MYCLE (Q9ZBM2) CDP-diacylglycerol--serine O-phosphatidyltransferase (EC| 2.7.8.8) (Phosphatidylserine synthase) Length = 300 Score = 29.3 bits (64), Expect = 5.7 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -1 Query: 222 LCYLEFLLHHRSRIGSRPAAWDSK 151 LC++ F +H++ + + P AWD K Sbjct: 230 LCHIPFAIHNQRWLAAHPEAWDDK 253
>TTC15_HUMAN (Q8WVT3) Tetratricopeptide repeat protein 15 (TPR repeat protein| 15) Length = 735 Score = 29.3 bits (64), Expect = 5.7 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 9/50 (18%) Frame = +2 Query: 314 RLRAQATRGGRGDPDPQ-WGREDPGG--------RDRFPTSHGRPGASAA 436 R+R +A GG GDP P+ G P G D P+S G P AA Sbjct: 87 RVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAA 136
>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor| Length = 323 Score = 29.3 bits (64), Expect = 5.7 Identities = 18/56 (32%), Positives = 24/56 (42%) Frame = +2 Query: 275 PGETGSA*LQSWWRLRAQATRGGRGDPDPQWGREDPGGRDRFPTSHGRPGASAATC 442 PG++G + Q G PD Q G+ G+ P + G PGA AA C Sbjct: 223 PGQSGG---------QGQQGPAGPAGPDGQPGQPGQDGQAGAPGNDGAPGADAAYC 269
>SYD_WOLPM (Q73HX6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 600 Score = 28.9 bits (63), Expect = 7.5 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +1 Query: 70 IQQYTIIMRKSRVRLRTRTNNKRTMSILAIPGCRPGTNPRSMMKKKLQIAQ 222 I T I R S + ++N +R M + AIP + PRS KK++ AQ Sbjct: 310 ISDVTEIFRDSGFNI-FKSNIERGMVVRAIPAPKTAEEPRSFFDKKIEHAQ 359
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 28.9 bits (63), Expect = 7.5 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = +2 Query: 275 PGETGSA*LQSWWRLRAQATRGGRGDPDPQWGREDPGGRDRFPTSHGRPG 424 PG G+ LQ RGG G P P+ + +PGG P + G PG Sbjct: 716 PGAAGTPGLQGM-----PGERGGLGSPGPKGDKGEPGG----PGADGVPG 756
>SFTPA_RAT (P08427) Pulmonary surfactant-associated protein A precursor (SP-A)| (PSP-A) (PSAP) Length = 248 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = +2 Query: 338 GGRGDPDPQWGREDPGGRDRFPTSHGRPGASAA 436 G +GDP P PGG P G PGA A Sbjct: 49 GVKGDPGPPGPMGPPGGMPGLPGRDGLPGAPGA 81
>HXA10_MOUSE (P31310) Homeobox protein Hox-A10 (Hox-1.8)| Length = 399 Score = 28.9 bits (63), Expect = 7.5 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%) Frame = -3 Query: 373 PSPLWIWIPTSSSCRLSP---EPPPRLQ 299 P+PL +W+ SCR+ P PPP+ Q Sbjct: 96 PAPLDLWLDAPRSCRMEPPDGPPPPQPQ 123
>SCN4A_HUMAN (P35499) Sodium channel protein type 4 alpha subunit (Sodium| channel protein type IV alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.4) (Sodium channel protein, skeletal muscle alpha-subunit) (SkM1) Length = 1836 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = +2 Query: 323 AQATRGGRGDPDPQWGREDPGGRDRFPTSHGRPGA 427 AQA GG D DP G++ G D TS G GA Sbjct: 488 AQALEGGEADGDPAHGKDCNGSLD---TSQGEKGA 519
>SEBP2_RAT (Q9QX72) SECIS-binding protein 2 (Selenocysteine insertion| sequence-binding protein 2) Length = 846 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +3 Query: 93 EEEQGPTTDENKQ*KNDVHPCYPRLPAWNQSEIDDEEETPN 215 E EQ ++ +NK+ K Y LP I+D EE PN Sbjct: 362 ELEQNESSKKNKKKKEKSKSSYEVLPVQEPPRIEDAEEFPN 402
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = +2 Query: 338 GGRGDPDPQW--GREDPGGRDRFPTSHGRPG 424 G +GDP PQ G P GRD P G PG Sbjct: 102 GPKGDPGPQGPRGPVGPPGRDGIPGQPGLPG 132
>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)| Length = 1262 Score = 28.5 bits (62), Expect = 9.7 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Frame = +2 Query: 275 PGETGSA*LQSWWRLRAQATRGGRGDPDPQWGREDPGGR--DRFPTSHGRPG 424 PG TG LQ RG G P P+ + +PGG+ D P + G G Sbjct: 715 PGGTGLPGLQGM-----PGERGASGSPGPKGDKGEPGGKGADGLPGARGERG 761
>SFTPA_MOUSE (P35242) Pulmonary surfactant-associated protein A precursor (SP-A)| (PSP-A) (PSAP) Length = 248 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = +2 Query: 338 GGRGDPDPQWGREDPGGRDRFPTSHGRPGASAA 436 G +GDP P PGG P G PGA A Sbjct: 49 GIKGDPGPPGPMGPPGGMPGLPGRDGLPGAPGA 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,935,779 Number of Sequences: 219361 Number of extensions: 1706452 Number of successful extensions: 5181 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 4786 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5170 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
