ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet114a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg... 206 5e-50
2emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroel... 176 4e-41
3dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-li... 176 4e-41
4gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotra... 172 7e-40
5gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotra... 172 7e-40
6gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retr... 172 7e-40
7gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 172 7e-40
8gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula ... 168 1e-38
9gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotra... 168 1e-38
10gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransp... 168 1e-38
11gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransp... 168 1e-38
12gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 167 4e-38
13gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposo... 167 4e-38
14gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 159 1e-35
15gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long term... 155 2e-34
16gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotra... 153 6e-34
17gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 151 2e-33
18gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotrans... 151 2e-33
19gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 151 2e-33
20gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotra... 149 1e-32
21gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposo... 145 2e-31
22gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposo... 145 2e-31
23gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposo... 145 2e-31
24gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotra... 137 4e-29
25gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposo... 137 4e-29
26emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 135 1e-28
27gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transpor... 135 1e-28
28gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC cl... 133 6e-28
29gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 121 2e-24
30gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkul... 48 0.027
31gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 ... 48 0.027
32gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransp... 48 0.027
33gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotran... 48 0.027
34gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposo... 48 0.027
35gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposo... 48 0.027
36ref|NM_126491.2| Arabidopsis thaliana cation transporter/ efflux... 44 0.42
37gb|AC007231.9| Arabidopsis thaliana chromosome 2 clone F7D11 map... 44 0.42
38gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, com... 42 1.7
39gb|AC133142.2| Homo sapiens chromosome 3 clone RP11-478I1, compl... 42 1.7
40gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, com... 42 1.7
41gb|AY747601.1| Triticum aestivum cultivar Triple Dirk D line VRN... 42 1.7
42gb|AY747600.1| Triticum aestivum cultivar Triple Dirk C line VRN... 42 1.7
43dbj|AB081310.1| Cryptomeria japonica Cry j 1.2 mRNA for Cry j 1 ... 42 1.7
44dbj|AB081309.1| Cryptomeria japonica Cry j 1.1 mRNA for Cry j 1 ... 42 1.7
45gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 6.5
46ref|XM_879595.1| PREDICTED: Bos taurus similar to Death domain-a... 40 6.5
47ref|XM_879563.1| PREDICTED: Bos taurus similar to Death domain-a... 40 6.5
48ref|XM_867050.1| PREDICTED: Bos taurus similar to Death domain-a... 40 6.5
49ref|XM_580441.2| PREDICTED: Bos taurus similar to Death domain-a... 40 6.5
50gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.5
51gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 6.5
52ref|XM_723020.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 6.5
53gb|AC079791.5| Homo sapiens BAC clone RP11-500M10 from 7, comple... 40 6.5
54gb|BC114741.1| Bos taurus cDNA clone MGC:138055 IMAGE:8082783, c... 40 6.5
55emb|AL158157.8| Human DNA sequence from clone RP11-413D24 on chr... 40 6.5
56emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.5
57ref|XM_682167.1| PREDICTED: Danio rerio similar to Contactin ass... 40 6.5
58gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome 40 6.5
59gb|AF045424.1|AF045424 Phytophthora infestans clone CG7 repeat r... 40 6.5
60dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
61gb|AC016776.6| Homo sapiens BAC clone RP11-574K22 from 2, comple... 40 6.5
62emb|BX005392.12| Zebrafish DNA sequence from clone DKEY-117J14 i... 40 6.5
63gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 6.5
64gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
65emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005... 40 6.5 
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic
            sequence
          Length = 3124

 Score =  206 bits (104), Expect = 5e-50
 Identities = 235/274 (85%), Gaps = 11/274 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1    acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
            |||||||| ||| ||| ||||||||||||||| |||||| ||||||||||||||||||  
Sbjct: 2431 acatgtactgaagagaagagtatatggaattggcttacaatcgccacaagctacatcaga 2372

                                                                        
Query: 61   ttcacatcaatacaacaatatacaatcatcatgaggaagagcagggtccgactacggacg 120
             ||||||| |||||  |  ||||||||  ||||| ||||||||||||||||||||| |||
Sbjct: 2371 gtcacatcgatacattac-atacaatcgccatgaagaagagcagggtccgactacgaacg 2313

                                                                        
Query: 121  agaacaaacaataaaagaacgatgtccatccttgctatcccaggctgccggcctggaacc 180
            | ||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 2312 aaaacaaacgataaaagaacgacgtccatccttgctatcccaggctgccgacctggaacc 2253

                                                                        
Query: 181  aatccgagatcgatg-------atgaagaagaaactccaaatagcacaa-catcgcgctg 232
             |||| ||||||| |       | |||||||||||||||||| | |||| |||||||   
Sbjct: 2252 catcctagatcgacgaagaagaaagaagaagaaactccaaat-gaacaatcatcgcgtgc 2194

                                              
Query: 233  acgtcttaatatcactttacatgtacctgcaact 266
            ||||||||||||| ||||||||||||||||||||
Sbjct: 2193 acgtcttaatatc-ctttacatgtacctgcaact 2161
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>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement
          Length = 13271

 Score =  176 bits (89), Expect = 4e-41
 Identities = 165/189 (87%), Gaps = 6/189 (3%)
 Strand = Plus / Minus

                                                                         
Query: 21    tatatggaattgtcttacactcgccacaagctacatcaagttcacatcaatacaacaata 80
             ||||| |||||| |||||||||||||||||||||||||   |||||||||||||    ||
Sbjct: 10560 tatattgaattggcttacactcgccacaagctacatcagagtcacatcaatacat---ta 10504

                                                                         
Query: 81    tacaatcatcatgaggaagagcagggtccgactacggacgagaacaaacaataaaagaa- 139
              | || ||||| ||| ||||||||||||||||||||||||| ||||||| | ||||||| 
Sbjct: 10503 cataaacatcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaag 10444

                                                                         
Query: 140   --cgatgtccatccttgctatcccaggctgccggcctggaaccaatccgagatcgatgat 197
               ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||| 
Sbjct: 10443 aacgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaa 10384

                      
Query: 198   gaagaagaa 206
             |||||||||
Sbjct: 10383 gaagaagaa 10375



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   ctttacatgtacctgcaact 266
             ||||||||||||||||||||
Sbjct: 10327 ctttacatgtacctgcaact 10308
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>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement
            BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR
            sequence
          Length = 3130

 Score =  176 bits (89), Expect = 4e-41
 Identities = 165/189 (87%), Gaps = 6/189 (3%)
 Strand = Plus / Minus

                                                                        
Query: 21   tatatggaattgtcttacactcgccacaagctacatcaagttcacatcaatacaacaata 80
            ||||| |||||| |||||||||||||||||||||||||   |||||||||||||    ||
Sbjct: 3003 tatattgaattggcttacactcgccacaagctacatcagagtcacatcaatacat---ta 2947

                                                                        
Query: 81   tacaatcatcatgaggaagagcagggtccgactacggacgagaacaaacaataaaagaa- 139
             | || ||||| ||| ||||||||||||||||||||||||| ||||||| | ||||||| 
Sbjct: 2946 cataaacatcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaag 2887

                                                                        
Query: 140  --cgatgtccatccttgctatcccaggctgccggcctggaaccaatccgagatcgatgat 197
              ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||| 
Sbjct: 2886 aacgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaa 2827

                     
Query: 198  gaagaagaa 206
            |||||||||
Sbjct: 2826 gaagaagaa 2818



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 247  ctttacatgtacctgcaact 266
            ||||||||||||||||||||
Sbjct: 2770 ctttacatgtacctgcaact 2751
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>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial
           sequence
          Length = 3804

 Score =  172 bits (87), Expect = 7e-40
 Identities = 150/169 (88%), Gaps = 4/169 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
           ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| ||| 
Sbjct: 166 acatgtaaagaagagatgagtatatggaattggcttacactcgccacaagctacaacaat 107

                                                                       
Query: 61  ttcacatcaatacaacaatat-acaatcatcatgaggaagagcagggtccgactacggac 119
            ||||||||||||| |||||| |||||||||||   ||||||||||||||| ||||||||
Sbjct: 106 atcacatcaatacatcaatataacaatcatcatacagaagagcagggtccggctacggac 47

                                                            
Query: 120 gagaacaaacaataaaagaacgatgtccatccttgctatcccaggctgc 168
           || ||||||| |||||| |||    ||||||||||||||||||||||||
Sbjct: 46  gaaaacaaacgataaaacaac---atccatccttgctatcccaggctgc 1
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>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial
           sequence
          Length = 3943

 Score =  172 bits (87), Expect = 7e-40
 Identities = 150/169 (88%), Gaps = 4/169 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
           ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| ||| 
Sbjct: 166 acatgtaaagaagagatgagtatatggaattggcttacactcgccacaagctacaacaat 107

                                                                       
Query: 61  ttcacatcaatacaacaatat-acaatcatcatgaggaagagcagggtccgactacggac 119
            ||||||||||||| |||||| |||||||||||   ||||||||||||||| ||||||||
Sbjct: 106 atcacatcaatacatcaatataacaatcatcatacagaagagcagggtccggctacggac 47

                                                            
Query: 120 gagaacaaacaataaaagaacgatgtccatccttgctatcccaggctgc 168
           || ||||||| |||||| |||    ||||||||||||||||||||||||
Sbjct: 46  gaaaacaaacgataaaacaac---atccatccttgctatcccaggctgc 1
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>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7731

 Score =  172 bits (87), Expect = 7e-40
 Identities = 180/208 (86%), Gaps = 6/208 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
            ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| ||| 
Sbjct: 4328 acatgtaaagaagagatgagtatatggaattggcttacactcgccacaagctacaacaaa 4269

                                                                        
Query: 61   ttcacatcaatacaaca--atatacaatcatcatgaggaagagcagggtccgactacgga 118
              |||||||||||||||  |||| ||| ||||||   |||||||||||||||||||||||
Sbjct: 4268 accacatcaatacaacaacatatccaaacatcatacagaagagcagggtccgactacgga 4209

                                                                        
Query: 119  cgagaacaaacaataaaagaacgatgtccatccttgctatcccaggctgccggcctggaa 178
            ||| ||||||| ||||   || ||  ||||||||||||||||||||||||| ||||||||
Sbjct: 4208 cgaaaacaaacgataa---aatgacatccatccttgctatcccaggctgcc-gcctggaa 4153

                                        
Query: 179  ccaatccgagatcgatgatgaagaagaa 206
            || |||| | ||||| || |||||||||
Sbjct: 4152 cccatcctatatcgaagaagaagaagaa 4125
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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score =  172 bits (87), Expect = 7e-40
 Identities = 163/187 (87%), Gaps = 6/187 (3%)
 Strand = Plus / Minus

                                                                          
Query: 21     tatatggaattgtcttacactcgccacaagctacatcaagttcacatcaatacaacaata 80
              ||||| || ||| |||||||||||||||||||||||||   |||||||| ||||    ||
Sbjct: 327166 tatatagagttggcttacactcgccacaagctacatcagagtcacatcagtacat---ta 327110

                                                                          
Query: 81     tacaatcatcatgaggaagagcagggtccgactacggacgagaacaaacaataaaagaa- 139
               | |||||||| ||| ||||||||||||||||||||||||| ||||||| | ||||||| 
Sbjct: 327109 cataatcatcaagagtaagagcagggtccgactacggacgaaaacaaacgagaaaagaag 327050

                                                                          
Query: 140    --cgatgtccatccttgctatcccaggctgccggcctggaaccaatccgagatcgatgat 197
                ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 327049 aacgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgat 326990

                     
Query: 198    gaagaag 204
              |||||||
Sbjct: 326989 gaagaag 326983



 Score =  133 bits (67), Expect = 6e-28
 Identities = 160/189 (84%), Gaps = 9/189 (4%)
 Strand = Plus / Minus

                                                                          
Query: 21     tatatggaattgtcttacactcgccacaagctacatcaagttcacatcaatacaacaata 80
              ||||| || ||| |||||||||||||||||||||||||   |||||||| ||||      
Sbjct: 131563 tatatagagttggcttacactcgccacaagctacatcagagtcacatcagtacat----- 131509

                                                                          
Query: 81     tacaatcatcatgaggaagagcagggtccgactacggacgagaacaaacaataaaagaa- 139
              |||| |||||| ||| |||||||||||||||||||||| || ||||||| | ||||||| 
Sbjct: 131508 taca-tcatcaagagtaagagcagggtccgactacggaagaaaacaaacgagaaaagaag 131450

                                                                          
Query: 140    --cgatgtccatccttgctatcccaggctgccggcctggaaccaatccgagatcgatgat 197
                ||| ||||||||||||||||||||||||||| ||||||||| |||| |||||||||| 
Sbjct: 131449 aacgacgtccatccttgctatcccaggctgccgccctggaacccatcctagatcgatgaa 131390

                       
Query: 198    gaagaagaa 206
              | |||||||
Sbjct: 131389 ggagaagaa 131381



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    ctttacatgtacctgcaact 266
              ||||||||||||||||||||
Sbjct: 131336 ctttacatgtacctgcaact 131317
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>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon,
           partial sequence
          Length = 3434

 Score =  168 bits (85), Expect = 1e-38
 Identities = 150/170 (88%), Gaps = 5/170 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
           ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 167 acatgtaaagaagagatgagtatatggaattggcttacactcgccacaagctacatcaat 108

                                                                       
Query: 61  ttcacatcaatacaaca--atatacaatcatcatgaggaagagcagggtccgactacgga 118
            ||||||||||||||||  | |||||| ||||||   |||||||||||||||||||||||
Sbjct: 107 atcacatcaatacaacaacaaatacaaacatcatacagaagagcagggtccgactacgga 48

                                                             
Query: 119 cgagaacaaacaataaaagaacgatgtccatccttgctatcccaggctgc 168
           ||| ||||||| ||||   || ||  ||||||||||||||||||||||||
Sbjct: 47  cgaaaacaaacgataa---aatgacatccatccttgctatcccaggctgc 1
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>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial
           sequence
          Length = 3698

 Score =  168 bits (85), Expect = 1e-38
 Identities = 150/170 (88%), Gaps = 5/170 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
           ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| ||| 
Sbjct: 167 acatgtaaagaagagatgagtatatggaattggcttacactcgccacaagctacaacaat 108

                                                                       
Query: 61  ttcacatcaatacaaca--atatacaatcatcatgaggaagagcagggtccgactacgga 118
            ||||||||||||| ||  |||||||||||||||   ||||||||||||||| |||||||
Sbjct: 107 atcacatcaatacatcaatatatacaatcatcatacagaagagcagggtccggctacgga 48

                                                             
Query: 119 cgagaacaaacaataaaagaacgatgtccatccttgctatcccaggctgc 168
           ||| ||||||| |||||| |||    ||||||||||||||||||||||||
Sbjct: 47  cgaaaacaaacgataaaacaac---atccatccttgctatcccaggctgc 1
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>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial
           sequence
          Length = 3764

 Score =  168 bits (85), Expect = 1e-38
 Identities = 150/170 (88%), Gaps = 5/170 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
           ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 167 acatgtaaagaagagatgagtatatggaattggcttacactcgccacaagctacatcaat 108

                                                                       
Query: 61  ttcacatcaatacaaca--atatacaatcatcatgaggaagagcagggtccgactacgga 118
            ||||||||||||||||  |||||||| ||||||   |||||||||||||||||||||||
Sbjct: 107 atcacatcaatacaacaacatatacaaacatcatacagaagagcagggtccgactacgga 48

                                                             
Query: 119 cgagaacaaacaataaaagaacgatgtccatccttgctatcccaggctgc 168
           ||| ||||||  ||||   || ||  ||||||||||||||||||||||||
Sbjct: 47  cgaaaacaaatgataa---aatgacatccatccttgctatcccaggctgc 1
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>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial
           sequence
          Length = 3774

 Score =  168 bits (85), Expect = 1e-38
 Identities = 150/170 (88%), Gaps = 5/170 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
           ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 167 acatgtaaagaagagatgagtatatggaattggcttacactcgccacaagctacatcaat 108

                                                                       
Query: 61  ttcacatcaatacaaca--atatacaatcatcatgaggaagagcagggtccgactacgga 118
            ||||||||||||||||  |||||||| ||||||   |||||||||||||||||||||||
Sbjct: 107 atcacatcaatacaacaacatatacaaacatcatacagaagagcagggtccgactacgga 48

                                                             
Query: 119 cgagaacaaacaataaaagaacgatgtccatccttgctatcccaggctgc 168
           ||| ||||||  ||||   || ||  ||||||||||||||||||||||||
Sbjct: 47  cgaaaacaaatgataa---aatgacatccatccttgctatcccaggctgc 1
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>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score =  167 bits (84), Expect = 4e-38
 Identities = 154/176 (87%), Gaps = 6/176 (3%)
 Strand = Plus / Plus

                                                                          
Query: 34     cttacactcgccacaagctacatcaagttcacatcaatacaacaatatacaatcatcatg 93
              |||||||||||||||||||||||||   |||||||| ||||    || | |||||||| |
Sbjct: 102785 cttacactcgccacaagctacatcagagtcacatcagtacat---tacataatcatcaag 102841

                                                                          
Query: 94     aggaagagcagggtccgactacggacgagaacaaacaataaaagaa---cgatgtccatc 150
              || ||||||||||||||||||||||||| ||||||| | |||||||   ||| |||||||
Sbjct: 102842 agtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatc 102901

                                                                      
Query: 151    cttgctatcccaggctgccggcctggaaccaatccgagatcgatgatgaagaagaa 206
              |||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 102902 cttgctatcccaggctgccggcctggaacccatcctagatcgatgatgatgaagaa 102957
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>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence
          Length = 7674

 Score =  167 bits (84), Expect = 4e-38
 Identities = 157/180 (87%), Gaps = 6/180 (3%)
 Strand = Plus / Minus

                                                                        
Query: 27   gaattgtcttacactcgccacaagctacatcaagttcacatcaatacaacaatatacaat 86
            |||||| |||||||||||||||||||||||||   |||||||| ||||    || | |||
Sbjct: 4188 gaattggcttacactcgccacaagctacatcagagtcacatcagtacat---tacataat 4132

                                                                        
Query: 87   catcatgaggaagagcagggtccgactacggacgagaacaaacaataaaagaacgatgtc 146
            ||||| ||| ||||||||||||||||||||||||| ||||||| | ||||   ||| |||
Sbjct: 4131 catcaagagtaagagcagggtccgactacggacgaaaacaaacgagaaaa---cgacgtc 4075

                                                                        
Query: 147  catccttgctatcccaggctgccggcctggaaccaatccgagatcgatgatgaagaagaa 206
            |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||
Sbjct: 4074 catccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaagaa 4015
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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score =  159 bits (80), Expect = 1e-35
 Identities = 153/176 (86%), Gaps = 6/176 (3%)
 Strand = Plus / Plus

                                                                         
Query: 34    cttacactcgccacaagctacatcaagttcacatcaatacaacaatatacaatcatcatg 93
             |||||||||||||||||||||||||   |||||||| ||||    || | |||||||| |
Sbjct: 64853 cttacactcgccacaagctacatcagagtcacatcagtacat---tacataatcatcaag 64909

                                                                         
Query: 94    aggaagagcagggtccgactacggacgagaacaaacaataaaagaa---cgatgtccatc 150
             || |||||||||||||| |||||||||| ||||||| | |||||||   ||| |||||||
Sbjct: 64910 agtaagagcagggtccgtctacggacgaaaacaaacgacaaaagaagaacgacgtccatc 64969

                                                                     
Query: 151   cttgctatcccaggctgccggcctggaaccaatccgagatcgatgatgaagaagaa 206
             |||||||||||||||||||||||||||||| |||| |||||||||| |||||||||
Sbjct: 64970 cttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaagaa 65025
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>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial
             and complete sequences
          Length = 11820

 Score =  155 bits (78), Expect = 2e-34
 Identities = 153/177 (86%), Gaps = 7/177 (3%)
 Strand = Plus / Minus

                                                                         
Query: 34    cttacactcgccacaagctacatcaagttcacatcaatacaacaatatacaatcatcatg 93
             ||||||||||||||||| |||||||   |||||||| ||||    || | |||||||| |
Sbjct: 11725 cttacactcgccacaagttacatcagagtcacatcagtacat---tacataatcatcaag 11669

                                                                         
Query: 94    aggaagagcagggtccgactacggacgagaacaaac----aataaaagaacgatgtccat 149
             || ||||||||||||||||||||||||| |||||||    || | |||||||| ||||||
Sbjct: 11668 agtaagagcagggtccgactacggacgaaaacaaacgagaaaaataagaacgacgtccat 11609

                                                                      
Query: 150   ccttgctatcccaggctgccggcctggaaccaatccgagatcgatgatgaagaagaa 206
             ||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||
Sbjct: 11608 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaagaa 11552



 Score =  151 bits (76), Expect = 2e-33
 Identities = 152/176 (86%), Gaps = 6/176 (3%)
 Strand = Plus / Minus

                                                                        
Query: 34   cttacactcgccacaagctacatcaagttcacatcaatacaacaatatacaatcatcatg 93
            |||||||||||||||||||||||||   |||||||| ||||    || |  ||||||| |
Sbjct: 4187 cttacactcgccacaagctacatcagagtcacatcagtacat---tacatcatcatcaag 4131

                                                                        
Query: 94   aggaagagcagggtccgactacggacgagaacaaacaataaaagaa---cgatgtccatc 150
            || ||||||||||||||||||||||||| ||||||| | |||||||   |||  ||||||
Sbjct: 4130 agtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacatccatc 4071

                                                                    
Query: 151  cttgctatcccaggctgccggcctggaaccaatccgagatcgatgatgaagaagaa 206
            |||||||||||||||||||||||||||||| |||| |||||||||| |||||||||
Sbjct: 4070 cttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaagaa 4015
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>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial
           sequence
          Length = 3862

 Score =  153 bits (77), Expect = 6e-34
 Identities = 148/170 (87%), Gaps = 5/170 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
           ||||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct: 167 acatgtaaagaagagatgagtatatggaattggcttacactcgccacaagctaaatcatg 108

                                                                       
Query: 61  ttcacatcaatacaaca--atatacaatcatcatgaggaagagcagggtccgactacgga 118
            ||| ||||||||||||  | || ||||||||||   |||||||||||||||||||| ||
Sbjct: 107 atcatatcaatacaacaacacattcaatcatcatacagaagagcagggtccgactacaga 48

                                                             
Query: 119 cgagaacaaacaataaaagaacgatgtccatccttgctatcccaggctgc 168
           ||| ||||||| ||||   |||||  ||||||||||||||||||||||||
Sbjct: 47  cgaaaacaaacgataa---aacgacatccatccttgctatcccaggctgc 1
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>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score =  151 bits (76), Expect = 2e-33
 Identities = 114/126 (90%), Gaps = 3/126 (2%)
 Strand = Plus / Plus

                                                                         
Query: 84    aatcatcatgaggaagagcagggtccgactacggacgagaacaaacaataaaagaa---c 140
             |||||||| ||| ||||||||||||||||||||||||| ||||||| | |||||||   |
Sbjct: 68204 aatcatcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaac 68263

                                                                         
Query: 141   gatgtccatccttgctatcccaggctgccggcctggaaccaatccgagatcgatgatgaa 200
             || ||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||
Sbjct: 68264 gacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaa 68323

                   
Query: 201   gaagaa 206
             ||||||
Sbjct: 68324 gaagaa 68329
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>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal
            repeat, complete sequence
          Length = 7575

 Score =  151 bits (76), Expect = 2e-33
 Identities = 152/176 (86%), Gaps = 6/176 (3%)
 Strand = Plus / Minus

                                                                        
Query: 34   cttacactcgccacaagctacatcaagttcacatcaatacaacaatatacaatcatcatg 93
            |||||||||||||||||||||||||   |||||||| ||||    || |  ||||||| |
Sbjct: 4187 cttacactcgccacaagctacatcagagtcacatcagtacat---tacatcatcatcaag 4131

                                                                        
Query: 94   aggaagagcagggtccgactacggacgagaacaaacaataaaagaa---cgatgtccatc 150
            || ||||||||||||||||||||||||| ||||||| | |||||||   |||  ||||||
Sbjct: 4130 agtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacatccatc 4071

                                                                    
Query: 151  cttgctatcccaggctgccggcctggaaccaatccgagatcgatgatgaagaagaa 206
            |||||||||||||||||||||||||||||| |||| |||||||||| |||||||||
Sbjct: 4070 cttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaagaa 4015
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>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
             intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
             complete cds
          Length = 65979

 Score =  151 bits (76), Expect = 2e-33
 Identities = 152/176 (86%), Gaps = 6/176 (3%)
 Strand = Plus / Minus

                                                                         
Query: 34    cttacactcgccacaagctacatcaagttcacatcaatacaacaatatacaatcatcatg 93
             |||||||||||||||||||||||||   |||||||| ||||    || | |||||||| |
Sbjct: 11066 cttacactcgccacaagctacatcagagtcacatcagtacat---tacataatcatcaag 11010

                                                                         
Query: 94    aggaagagcagggtccgactacggacgagaacaaacaataaaagaa---cgatgtccatc 150
             || ||||||||||||||||||||||||| ||||||| | |||||||   ||| |||||||
Sbjct: 11009 agtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatc 10950

                                                                     
Query: 151   cttgctatcccaggctgccggcctggaaccaatccgagatcgatgatgaagaagaa 206
             |||||||||| ||| ||||||||||||||| |||| |||||||||| |||||||||
Sbjct: 10949 cttgctatccgagggtgccggcctggaacccatcctagatcgatgaagaagaagaa 10894
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>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7586

 Score =  149 bits (75), Expect = 1e-32
 Identities = 177/208 (85%), Gaps = 6/208 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
            ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| ||| 
Sbjct: 4129 acatgtaaagaagagatgagtatatggaattggcttacactcgccacaagctacaacaat 4070

                                                                        
Query: 61   ttcacatcaatacaaca--atatacaatcatcatgaggaagagcagggtccgactacgga 118
              |||||||||||||||  |||||||| ||||||   |||||||||||||  ||||||||
Sbjct: 4069 accacatcaatacaacatcatatacaaacatcatacagaagagcagggtctaactacgga 4010

                                                                        
Query: 119  cgagaacaaacaataaaagaacgatgtccatccttgctatcccaggctgccggcctggaa 178
            ||| ||||||| ||||   || ||   |||||||||||||||||||||||| ||||||||
Sbjct: 4009 cgaaaacaaacgataa---aatgacacccatccttgctatcccaggctgcc-gcctggaa 3954

                                        
Query: 179  ccaatccgagatcgatgatgaagaagaa 206
            || ||||  |||| | || |||||||||
Sbjct: 3953 cccatcctggatcaaagaagaagaagaa 3926
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>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial
           sequence
          Length = 3622

 Score =  145 bits (73), Expect = 2e-31
 Identities = 141/162 (87%), Gaps = 5/162 (3%)
 Strand = Plus / Minus

                                                                       
Query: 9   agaatagatgagtatatggaattgtcttacactcgccacaagctacatcaagttcacatc 68
           |||| ||||||||||||||||||| ||||||||||||||||||||||||||  |||||||
Sbjct: 159 agaagagatgagtatatggaattggcttacactcgccacaagctacatcaatatcacatc 100

                                                                       
Query: 69  aatacaaca--atatacaatcatcatgaggaagagcagggtccgactacggacgagaaca 126
           ||||||| |  || | ||| ||||||   |||||||||||||||||||||||||| ||||
Sbjct: 99  aatacaataacatctccaaacatcatacagaagagcagggtccgactacggacgaaaaca 40

                                                     
Query: 127 aacaataaaagaacgatgtccatccttgctatcccaggctgc 168
           ||| ||||   || ||  ||||||||||||||||||||||||
Sbjct: 39  aacgataa---aatgacatccatccttgctatcccaggctgc 1
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>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial
           sequence
          Length = 3613

 Score =  145 bits (73), Expect = 2e-31
 Identities = 141/162 (87%), Gaps = 5/162 (3%)
 Strand = Plus / Minus

                                                                       
Query: 9   agaatagatgagtatatggaattgtcttacactcgccacaagctacatcaagttcacatc 68
           |||| ||||||||||||||||||| ||||||||||||||||||||||||||  |||||||
Sbjct: 159 agaagagatgagtatatggaattggcttacactcgccacaagctacatcaatatcacatc 100

                                                                       
Query: 69  aatacaaca--atatacaatcatcatgaggaagagcagggtccgactacggacgagaaca 126
           ||||||| |  || | ||| ||||||   |||||||||||||||||||||||||| ||||
Sbjct: 99  aatacaataacatctccaaacatcatacagaagagcagggtccgactacggacgaaaaca 40

                                                     
Query: 127 aacaataaaagaacgatgtccatccttgctatcccaggctgc 168
           ||| ||||   || ||  ||||||||||||||||||||||||
Sbjct: 39  aacgataa---aatgacatccatccttgctatcccaggctgc 1
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>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula,
           complete sequence
          Length = 3695

 Score =  145 bits (73), Expect = 2e-31
 Identities = 147/170 (86%), Gaps = 5/170 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
           ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 167 acatgtaaagaagagatgagtatatggaattggcttacactcgccacaagctacatcaac 108

                                                                       
Query: 61  ttcacatcaatacaacaatata--caatcatcatgaggaagagcagggtccgactacgga 118
            ||||||||||||||||| |||  | | ||||||   ||||||||||||||  |||||||
Sbjct: 107 atcacatcaatacaacaacatattcgaacatcatacagaagagcagggtccatctacgga 48

                                                             
Query: 119 cgagaacaaacaataaaagaacgatgtccatccttgctatcccaggctgc 168
           ||| ||||||| ||||   || ||  ||||||||||||||||||||||||
Sbjct: 47  cgaaaacaaacgataa---aatgacatccatccttgctatcccaggctgc 1
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>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7919

 Score =  137 bits (69), Expect = 4e-29
 Identities = 147/171 (85%), Gaps = 4/171 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
            |||||||||||| |||||||||||| |||||| |||||||||| ||||||||||||||  
Sbjct: 4439 acatgtacagaagagatgagtatatagaattggcttacactcgtcacaagctacatcaga 4380

                                                                        
Query: 61   ttcacatcaatacaacaatatac-aatcatcatgaggaagagcagggtccgactacggac 119
             ||||||||||||||||| ||||  | ||||||    |||||||||||||||||||||||
Sbjct: 4379 gtcacatcaatacaacaacatactcaacatcatacataagagcagggtccgactacggac 4320

                                                               
Query: 120  gagaacaaacaataaaagaacgatgtccatccttgctatcccaggctgccg 170
            || | ||||||||||   || ||  |||||||||||||||| |||||||||
Sbjct: 4319 gaaatcaaacaataa---aatgacatccatccttgctatcctaggctgccg 4272
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>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula,
           complete sequence
          Length = 3683

 Score =  137 bits (69), Expect = 4e-29
 Identities = 146/170 (85%), Gaps = 5/170 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtacagaatagatgagtatatggaattgtcttacactcgccacaagctacatcaag 60
           ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 167 acatgtaaagaagagatgagtatatggaattggcttacactcgccacaagctacatcaac 108

                                                                       
Query: 61  ttcacatcaatacaaca--atatacaatcatcatgaggaagagcagggtccgactacgga 118
            ||||||||||||||||  |||| ||| | |||    |||||||||||||||||||||||
Sbjct: 107 atcacatcaatacaacaacatatccaaacgtcaaacagaagagcagggtccgactacgga 48

                                                             
Query: 119 cgagaacaaacaataaaagaacgatgtccatccttgctatcccaggctgc 168
           ||| || |||  ||||   || ||  ||||||||||||||||||||||||
Sbjct: 47  cgaaaaaaaatgataa---aatgacatccatccttgctatcccaggctgc 1
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>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score =  135 bits (68), Expect = 1e-28
 Identities = 142/165 (86%), Gaps = 5/165 (3%)
 Strand = Plus / Plus

                                                                         
Query: 34    cttacactcgccacaagctacatcaagttcacatcaatacaacaatatacaatcatcatg 93
             ||||||||| |||||||||||||||   |||||||| ||||    || | |||||||| |
Sbjct: 37293 cttacactcaccacaagctacatcagagtcacatcagtacat---tacataatcatcaag 37349

                                                                         
Query: 94    aggaagagcagggtccgactacggacgagaacaaacaataaaag--aacgatgtccatcc 151
             || |||||| |||||||||||||||||| ||||||| | ||||   ||||| ||||||||
Sbjct: 37350 agtaagagcggggtccgactacggacgaaaacaaacgagaaaatgaaacgacgtccatcc 37409

                                                          
Query: 152   ttgctatcccaggctgccggcctggaaccaatccgagatcgatga 196
             ||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 37410 ttgctatcccaggctgccggcctggaacccatcctagatcgatga 37454
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>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene,
            complete cds
          Length = 6561

 Score =  135 bits (68), Expect = 1e-28
 Identities = 150/176 (85%), Gaps = 6/176 (3%)
 Strand = Plus / Plus

                                                                        
Query: 34   cttacactcgccacaagctacatcaagttcacatcaatacaacaatatacaatcatcatg 93
            |||||||||||||||||||||||||   |||||||| ||||    || | |||||||| |
Sbjct: 2555 cttacactcgccacaagctacatcagagtcacatcagtacat---tacataatcatcaag 2611

                                                                        
Query: 94   aggaagagcagggtccgactacggacgagaacaa---acaataaaagaacgatgtccatc 150
             | ||||||||||||||||||||||||| |||||   | || | |||||||| |||||||
Sbjct: 2612 ggtaagagcagggtccgactacggacgaaaacaaccgagaaaagaagaacgacgtccatc 2671

                                                                    
Query: 151  cttgctatcccaggctgccggcctggaaccaatccgagatcgatgatgaagaagaa 206
            ||||||||||||||||||||| |||||||| |||| |||| ||||| |||||||||
Sbjct: 2672 cttgctatcccaggctgccggtctggaacccatcctagattgatgaagaagaagaa 2727
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>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
             sequence
          Length = 113510

 Score =  133 bits (67), Expect = 6e-28
 Identities = 102/113 (90%), Gaps = 3/113 (2%)
 Strand = Plus / Plus

                                                                         
Query: 97    aagagcagggtccgactacggacgagaacaaacaataaaagaa---cgatgtccatcctt 153
             ||||||||||||||||||| ||||| ||||||| | |||||||   ||| ||||||||||
Sbjct: 16443 aagagcagggtccgactacagacgaaaacaaacgacaaaagaagaacgacgtccatcctt 16502

                                                                  
Query: 154   gctatcccaggctgccggcctggaaccaatccgagatcgatgatgaagaagaa 206
             ||||||||||||||||||||||||||| |||| |||||||||| |||||||||
Sbjct: 16503 gctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaagaa 16555



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 34    cttacactcgccacaagctacatca 58
             ||||||||||||| |||||||||||
Sbjct: 16383 cttacactcgccaaaagctacatca 16407
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>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
            locus region
          Length = 160897

 Score =  121 bits (61), Expect = 2e-24
 Identities = 150/177 (84%), Gaps = 7/177 (3%)
 Strand = Plus / Plus

                                                                        
Query: 34   cttacactcgccacaagctacatcaagttcacatcaatacaacaatatacaatcatcatg 93
            |||||||||||||||||||||||||   |||| ||| ||||    || | |||||||| |
Sbjct: 3322 cttacactcgccacaagctacatcagagtcacctcagtacat---tacataatcatcaag 3378

                                                                        
Query: 94   aggaagagcagggtccgactacggacg-agaacaa---acaataaaagaacgatgtccat 149
            || |||||||||||||||||| ||| | | |||||   |||| | |||||||| ||||||
Sbjct: 3379 agtaagagcagggtccgactatggatgaaaaacaaacgacaaaagaagaacgacgtccat 3438

                                                                     
Query: 150  ccttgctatcccaggctgccggcctggaaccaatccgagatcgatgatgaagaagaa 206
            ||||||||||||||||||||||||||||||| |||| ||||||| || |||||||||
Sbjct: 3439 ccttgctatcccaggctgccggcctggaacccatcctagatcgaagaagaagaagaa 3495
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>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon,
           partial sequence
          Length = 4001

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 145 tccatccttgctatcccaggctgc 168
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1
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>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula
           retrotransposon, partial sequence
          Length = 3935

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 145 tccatccttgctatcccaggctgc 168
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1
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>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial
           sequence
          Length = 3997

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 145 tccatccttgctatcccaggctgc 168
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1
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>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial
           sequence
          Length = 4120

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 145 tccatccttgctatcccaggctgc 168
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1
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>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial
           sequence
          Length = 2924

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 145 tccatccttgctatcccaggctgc 168
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1
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>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial
           sequence
          Length = 2923

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 145 tccatccttgctatcccaggctgc 168
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1
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>ref|NM_126491.2| Arabidopsis thaliana cation transporter/ efflux permease AT2G04620
           mRNA, complete cds
          Length = 2397

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 198 gaagaagaaactccaaatagca 219
           ||||||||||||||||||||||
Sbjct: 891 gaagaagaaactccaaatagca 870
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>gb|AC007231.9| Arabidopsis thaliana chromosome 2 clone F7D11 map RNS1, complete
            sequence
          Length = 19338

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 198  gaagaagaaactccaaatagca 219
            ||||||||||||||||||||||
Sbjct: 7235 gaagaagaaactccaaatagca 7214
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>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence
          Length = 172618

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    tccttgctatcccaggctgcc 169
              |||||||||||||||||||||
Sbjct: 170021 tccttgctatcccaggctgcc 170001
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>gb|AC133142.2| Homo sapiens chromosome 3 clone RP11-478I1, complete sequence
          Length = 19658

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 78    atatacaatcatcatgaggaa 98
             |||||||||||||||||||||
Sbjct: 16687 atatacaatcatcatgaggaa 16667
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>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence
          Length = 168864

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   tccttgctatcccaggctgcc 169
             |||||||||||||||||||||
Sbjct: 20040 tccttgctatcccaggctgcc 20020
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>gb|AY747601.1| Triticum aestivum cultivar Triple Dirk D line VRN-A1 (VRN-A1) gene,
            complete cds; and Stowaway MITE and gypsy retrotransposon
            Sukkula, complete sequence
          Length = 12464

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 35   ttacactcgccacaagctaca 55
            |||||||||||||||||||||
Sbjct: 7583 ttacactcgccacaagctaca 7603
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>gb|AY747600.1| Triticum aestivum cultivar Triple Dirk C line VRN-A1 (VRN-A1) gene,
            complete cds; and Stowaway MITE and gypsy retrotransposon
            Sukkula, complete sequence
          Length = 12233

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 35   ttacactcgccacaagctaca 55
            |||||||||||||||||||||
Sbjct: 7352 ttacactcgccacaagctaca 7372
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>dbj|AB081310.1| Cryptomeria japonica Cry j 1.2 mRNA for Cry j 1 precursor, complete
            cds
          Length = 1313

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 64   acatcaatacaacaatataca 84
            |||||||||||||||||||||
Sbjct: 1253 acatcaatacaacaatataca 1233
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>dbj|AB081309.1| Cryptomeria japonica Cry j 1.1 mRNA for Cry j 1 precursor, complete
            cds
          Length = 1295

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 64   acatcaatacaacaatataca 84
            |||||||||||||||||||||
Sbjct: 1269 acatcaatacaacaatataca 1249
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    caagctcgcgcaggacgcgc 461
              ||||||||||||||||||||
Sbjct: 346600 caagctcgcgcaggacgcgc 346581
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>ref|XM_879595.1| PREDICTED: Bos taurus similar to Death domain-associated protein 6
            (Daxx) (hDaxx) (Fas death domain-associated protein)
            (ETS1 associated protein 1) (EAP1), transcript variant 4
            (LOC504336), mRNA
          Length = 2510

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  gagatcgatgatgaagaaga 205
            ||||||||||||||||||||
Sbjct: 1377 gagatcgatgatgaagaaga 1396
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>ref|XM_879563.1| PREDICTED: Bos taurus similar to Death domain-associated protein 6
            (Daxx) (hDaxx) (Fas death domain-associated protein)
            (ETS1 associated protein 1) (EAP1), transcript variant 3
            (LOC504336), mRNA
          Length = 2594

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  gagatcgatgatgaagaaga 205
            ||||||||||||||||||||
Sbjct: 1461 gagatcgatgatgaagaaga 1480
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>ref|XM_867050.1| PREDICTED: Bos taurus similar to Death domain-associated protein 6
            (Daxx) (hDaxx) (Fas death domain-associated protein)
            (ETS1 associated protein 1) (EAP1), transcript variant 2
            (LOC504336), mRNA
          Length = 2582

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  gagatcgatgatgaagaaga 205
            ||||||||||||||||||||
Sbjct: 1449 gagatcgatgatgaagaaga 1468
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>ref|XM_580441.2| PREDICTED: Bos taurus similar to Death domain-associated protein 6
            (Daxx) (hDaxx) (Fas death domain-associated protein)
            (ETS1 associated protein 1) (EAP1), transcript variant 1
            (LOC504336), mRNA
          Length = 2277

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  gagatcgatgatgaagaaga 205
            ||||||||||||||||||||
Sbjct: 1144 gagatcgatgatgaagaaga 1163
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 442     caagctcgcgcaggacgcgc 461
               ||||||||||||||||||||
Sbjct: 1077145 caagctcgcgcaggacgcgc 1077126
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 427     ttcggcggcgacctgcaagc 446
               ||||||||||||||||||||
Sbjct: 3111627 ttcggcggcgacctgcaagc 3111608
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>ref|XM_723020.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07283)
            partial mRNA
          Length = 2124

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 192  gatgatgaagaagaaactccaaat 215
            |||||||||||||||| |||||||
Sbjct: 1144 gatgatgaagaagaaattccaaat 1167
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>gb|AC079791.5| Homo sapiens BAC clone RP11-500M10 from 7, complete sequence
          Length = 103836

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   tcatcatgaggaagagcagg 105
            ||||||||||||||||||||
Sbjct: 2969 tcatcatgaggaagagcagg 2950
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>gb|BC114741.1| Bos taurus cDNA clone MGC:138055 IMAGE:8082783, complete cds
          Length = 2580

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  gagatcgatgatgaagaaga 205
            ||||||||||||||||||||
Sbjct: 1419 gagatcgatgatgaagaaga 1438
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>emb|AL158157.8| Human DNA sequence from clone RP11-413D24 on chromosome 9, complete
             sequence
          Length = 183410

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     atgtacagaatagatgagta 22
             ||||||||||||||||||||
Sbjct: 28795 atgtacagaatagatgagta 28776
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    caagctcgcgcaggacgcgc 461
              ||||||||||||||||||||
Sbjct: 958137 caagctcgcgcaggacgcgc 958118
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>ref|XM_682167.1| PREDICTED: Danio rerio similar to Contactin associated protein-like
           2 precursor (Cell recognition molecule Caspr2)
           (LOC558890), mRNA
          Length = 831

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 gtggggatccagatccacaa 364
           ||||||||||||||||||||
Sbjct: 95  gtggggatccagatccacaa 114
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>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome
          Length = 1176248

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    ttaatatcactttacatgta 257
              ||||||||||||||||||||
Sbjct: 651125 ttaatatcactttacatgta 651144
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>gb|AF045424.1|AF045424 Phytophthora infestans clone CG7 repeat region
          Length = 267

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 atggggacgggaggatccgg 383
           ||||||||||||||||||||
Sbjct: 139 atggggacgggaggatccgg 120
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     gatcgatgatgaagaagaaa 207
               ||||||||||||||||||||
Sbjct: 8121708 gatcgatgatgaagaagaaa 8121689
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>gb|AC016776.6| Homo sapiens BAC clone RP11-574K22 from 2, complete sequence
          Length = 197425

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    cactttacatgtacctgcaa 264
              ||||||||||||||||||||
Sbjct: 104402 cactttacatgtacctgcaa 104383
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>emb|BX005392.12| Zebrafish DNA sequence from clone DKEY-117J14 in linkage group 24,
              complete sequence
          Length = 178765

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 345    gtggggatccagatccacaa 364
              ||||||||||||||||||||
Sbjct: 162907 gtggggatccagatccacaa 162888
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    caagctcgcgcaggacgcgc 461
              ||||||||||||||||||||
Sbjct: 795135 caagctcgcgcaggacgcgc 795116
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     gatcgatgatgaagaagaaa 207
               ||||||||||||||||||||
Sbjct: 8121589 gatcgatgatgaagaagaaa 8121570
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>emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005_G05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151117

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   gatcgatgatgaagaagaaa 207
             ||||||||||||||||||||
Sbjct: 21970 gatcgatgatgaagaagaaa 21989


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,900,673
Number of Sequences: 3902068
Number of extensions: 3900673
Number of successful extensions: 89089
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88675
Number of HSP's gapped (non-prelim): 384
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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