ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet114a03 |
|---|---|
| Clone Library Name | barley_pub |
>RR31_SPIOL (P47910) 30S ribosomal protein S31, chloroplast (Fragment)| Length = 43 Score = 48.9 bits (115), Expect = 5e-06 Identities = 20/28 (71%), Positives = 24/28 (85%) Frame = -1 Query: 428 GARKTKRGKRFSHSYGNARPRNKKKGTG 345 G RKT +GKRF+HS+GNARP+NK KG G Sbjct: 3 GDRKTAKGKRFNHSFGNARPKNKNKGRG 30
>RR31_ORYSA (P47909) Putative 30S ribosomal protein S31, chloroplast precursor| (Fragment) Length = 62 Score = 40.8 bits (94), Expect = 0.001 Identities = 17/25 (68%), Positives = 20/25 (80%) Frame = -1 Query: 428 GARKTKRGKRFSHSYGNARPRNKKK 354 G +KTKRGKRF SYGN RP+ +KK Sbjct: 35 GDKKTKRGKRFKGSYGNXRPKREKK 59
>RSHX_THETH (P62612) 30S ribosomal protein Thx| Length = 26 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -1 Query: 428 GARKTKRGKRFSHSYGNARPRNKK 357 G R+T+RGK + +YG RPR KK Sbjct: 3 GDRRTRRGKIWRGTYGKYRPRKKK 26
>RSHX_THET8 (Q5SIH3) 30S ribosomal protein Thx (S31)| Length = 26 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -1 Query: 428 GARKTKRGKRFSHSYGNARPRNKK 357 G R+T+RGK + +YG RPR KK Sbjct: 3 GDRRTRRGKIWRGTYGKYRPRKKK 26
>RSHX_THET2 (P62613) 30S ribosomal protein Thx| Length = 26 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -1 Query: 428 GARKTKRGKRFSHSYGNARPRNKK 357 G R+T+RGK + +YG RPR KK Sbjct: 3 GDRRTRRGKIWRGTYGKYRPRKKK 26
>RSHX_THEAQ (P62611) 30S ribosomal protein Thx| Length = 26 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -1 Query: 428 GARKTKRGKRFSHSYGNARPRNKK 357 G R+T+RGK + +YG RPR KK Sbjct: 3 GDRRTRRGKIWRGTYGKYRPRKKK 26
>PELW_DICD3 (Q05526) Pectate disaccharide-lyase (EC 4.2.2.9)| (Exopolygalacturonate lyase) (ExoPL) Length = 553 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +3 Query: 204 GNHEIRGNSDILIHSLHDVIINLNCDDLPVFK 299 G++ + + D+ +HS HDV+ N +LP+ K Sbjct: 184 GDYARQRDPDVFLHSRHDVVTPANWPELPLTK 215
>DCTN4_RAT (Q9QUR2) Dynactin subunit 4 (Dynactin subunit p62)| Length = 467 Score = 28.5 bits (62), Expect = 7.1 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -1 Query: 104 KHRCLCAFDCLGCMH 60 K+RC FDC GCMH Sbjct: 67 KNRCANCFDCPGCMH 81
>DCTN4_MOUSE (Q8CBY8) Dynactin subunit 4 (Dynactin subunit p62)| Length = 467 Score = 28.5 bits (62), Expect = 7.1 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -1 Query: 104 KHRCLCAFDCLGCMH 60 K+RC FDC GCMH Sbjct: 67 KNRCANCFDCPGCMH 81
>DCTN4_PONPY (Q5R7U7) Dynactin subunit 4 (Dynactin subunit p62)| Length = 460 Score = 28.5 bits (62), Expect = 7.1 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -1 Query: 104 KHRCLCAFDCLGCMH 60 K+RC FDC GCMH Sbjct: 67 KNRCANCFDCPGCMH 81
>DCTN4_HUMAN (Q9UJW0) Dynactin subunit 4 (Dynactin subunit p62)| Length = 460 Score = 28.5 bits (62), Expect = 7.1 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -1 Query: 104 KHRCLCAFDCLGCMH 60 K+RC FDC GCMH Sbjct: 67 KNRCANCFDCPGCMH 81
>SYY_VIBCH (Q9KUQ0) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 426 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -1 Query: 134 LEVIIWCFSTKHRCLCAFD-CLGCMHIGKLAPML 36 LE ++ F+T C FD G +HIG L P+L Sbjct: 22 LEALVERFATPQVLYCGFDPTAGSLHIGHLVPLL 55
>TSD2_USTMA (Q99107) Protein TSD2| Length = 845 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 421 ERQREAKGSATHMEMHGPVTRRREQAQHG 335 ERQR+ G H P++RRR++ + G Sbjct: 235 ERQRDGSGGKRKRGSHSPLSRRRQRHKQG 263
>MURG_PROMM (Q7V466) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 361 Score = 28.1 bits (61), Expect = 9.2 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -2 Query: 85 PSIAWAVCI*GNWHLCWLALP 23 P++A A + G+W +CWL +P Sbjct: 17 PALAVAEALPGSWSVCWLGVP 37 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,396,178 Number of Sequences: 219361 Number of extensions: 1286708 Number of successful extensions: 2945 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2900 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2945 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
