ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet113h11 |
|---|---|
| Clone Library Name | barley_pub |
>HTH_ARATH (Q9S746) Protein HOTHEAD precursor (Protein ADHESION OF CALYX| EDGES) Length = 594 Score = 125 bits (314), Expect = 2e-29 Identities = 58/75 (77%), Positives = 62/75 (82%) Frame = -3 Query: 398 CKDTVITIWHYHGGCHVGKVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYF 219 CKDTV+TIWHYHGGC VGKVV +VLG LRV+DGSTF SPGTNPQAT+MMMGRY Sbjct: 520 CKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYM 579 Query: 218 GVKILRERLGPAAGV 174 GVKILRERLG AGV Sbjct: 580 GVKILRERLGNKAGV 594
>MDL2_PRUSE (O50048) (R)-mandelonitrile lyase 2 precursor (EC 4.1.2.10)| (Hydroxynitrile lyase 2) ((R)-oxynitrilase 2) Length = 576 Score = 91.3 bits (225), Expect = 5e-19 Identities = 39/69 (56%), Positives = 51/69 (73%) Frame = -3 Query: 398 CKDTVITIWHYHGGCHVGKVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYF 219 C++ V + WHYHGGC VG+V+D RV G + LRVVDGSTF +P ++PQ +M+GRY Sbjct: 479 CREAVASYWHYHGGCLVGEVLDDDFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYM 538 Query: 218 GVKILRERL 192 G KIL+ERL Sbjct: 539 GTKILQERL 547
>MDL1_PRUSE (P52706) (R)-mandelonitrile lyase 1 precursor (EC 4.1.2.10)| (Hydroxynitrile lyase 1) ((R)-oxynitrilase 1) Length = 563 Score = 90.9 bits (224), Expect = 7e-19 Identities = 39/68 (57%), Positives = 51/68 (75%) Frame = -3 Query: 398 CKDTVITIWHYHGGCHVGKVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYF 219 C+++V + WHYHGGC VGKV+D RV G LRVVDGSTF +P ++PQ +M+GRY Sbjct: 477 CRESVASYWHYHGGCLVGKVLDGDFRVTGIDALRVVDGSTFPYTPASHPQGFYLMLGRYV 536 Query: 218 GVKILRER 195 G+KIL+ER Sbjct: 537 GIKILQER 544
>MDL3_PRUSE (P52707) (R)-mandelonitrile lyase 3 precursor (EC 4.1.2.10)| (Hydroxynitrile lyase 3) ((R)-oxynitrilase 3) Length = 573 Score = 90.5 bits (223), Expect = 9e-19 Identities = 38/68 (55%), Positives = 52/68 (76%) Frame = -3 Query: 398 CKDTVITIWHYHGGCHVGKVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYF 219 C+++V + WHYHGGC VGKV+D RV G + LRVVDGSTF +P ++PQ +M+GRY Sbjct: 478 CRESVASYWHYHGGCLVGKVLDDGFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYM 537 Query: 218 GVKILRER 195 G++IL+ER Sbjct: 538 GIQILQER 545
>MDL4_PRUSE (O82784) (R)-mandelonitrile lyase 4 precursor (EC 4.1.2.10)| (Hydroxynitrile lyase 4) ((R)-oxynitrilase 4) Length = 574 Score = 89.7 bits (221), Expect = 1e-18 Identities = 39/68 (57%), Positives = 50/68 (73%) Frame = -3 Query: 398 CKDTVITIWHYHGGCHVGKVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYF 219 C+DTV + WHYHGG VGKV+D RV G + LRVVDGSTF +P ++PQ +M+GRY Sbjct: 479 CRDTVASYWHYHGGAIVGKVIDGNFRVTGINALRVVDGSTFPATPASHPQGFYLMLGRYV 538 Query: 218 GVKILRER 195 G KI++ER Sbjct: 539 GTKIVQER 546
>MDL1_PRUDU (O24243) (R)-mandelonitrile lyase 1 precursor (EC 4.1.2.10)| (Hydroxynitrile lyase 1) ((R)-oxynitrilase 1) Length = 559 Score = 83.6 bits (205), Expect = 1e-16 Identities = 37/68 (54%), Positives = 47/68 (69%) Frame = -3 Query: 398 CKDTVITIWHYHGGCHVGKVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYF 219 C D V + WHYHGG VGKV+D RV+G LRVVD STF P ++PQ +M+GRY Sbjct: 478 CLDNVASYWHYHGGSLVGKVLDDSFRVMGIKALRVVDASTFPYEPNSHPQGFYLMLGRYV 537 Query: 218 GVKILRER 195 G++IL+ER Sbjct: 538 GLQILQER 545
>NINAG_DROME (Q9VGP2) Neither inactivation nor afterpotential protein G| precursor (EC 1.-.-.-) Length = 581 Score = 41.6 bits (96), Expect = 5e-04 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = -3 Query: 371 HYHGG-CHVGKVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYFGVKILRER 195 H+ GG C +G VVD Q R+ G S +RVVD S R NP + V+ + IL+ Sbjct: 515 HHPGGTCALGSVVDSQLRLKGVSNVRVVDASVLPRPISGNPNSVVVAIALRAASWILKSE 574 Query: 194 L 192 L Sbjct: 575 L 575
>CHOD_STRS0 (P12676) Cholesterol oxidase precursor (EC 1.1.3.6) (CHOD)| Length = 546 Score = 41.2 bits (95), Expect = 6e-04 Identities = 21/59 (35%), Positives = 29/59 (49%) Frame = -3 Query: 374 WHYHGGCHVGKVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYFGVKILRE 198 +H GGC +GK D RV G L V DGS S G NP T+ + +I+++ Sbjct: 483 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 541
>BETA_CHRSL (Q9L4K0) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 558 Score = 40.0 bits (92), Expect = 0.001 Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 4/73 (5%) Frame = -3 Query: 380 TIWHYHGGCHVGK----VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYFGV 213 T +H G C +G+ V D Q RV G GLRVVD S F P N A +M+ Sbjct: 472 TAYHPCGSCRMGEGDMAVTDAQGRVHGLEGLRVVDASLFPVIPTGNLNAPTIMLAEKIAD 531 Query: 212 KILRERLGPAAGV 174 +I P A V Sbjct: 532 RIRGREPLPRASV 544
>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 550 Score = 39.3 bits (90), Expect = 0.002 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 7/78 (8%) Frame = -3 Query: 395 KDTVITIWHYHGGCHVGK------VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMM 234 +D + +H G C +G+ VVD + RV+G GLRV D S F R N A +M Sbjct: 458 RDHAESAYHPCGTCKMGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVTNGNLNAPSIM 517 Query: 233 MGRYFGVKIL-RERLGPA 183 G IL R L P+ Sbjct: 518 TGEKASDHILGRTPLAPS 535
>YTH2_RHOER (P46371) Hypothetical GMC-type oxidoreductase in thcA 5'region| (ORF2) Length = 493 Score = 38.1 bits (87), Expect = 0.005 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%) Frame = -3 Query: 380 TIWHYHGGCHVGK------VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMM 231 T H G C +G VVD + RV+GA GL +VD S P P AT +M+ Sbjct: 426 TSLHMSGSCVMGAESDPFAVVDDRCRVIGAQGLSIVDTSILPTIPTRGPHATAVMV 481
>Y4NJ_RHISN (P55582) Hypothetical GMC-type oxidoreductase y4nJ| Length = 505 Score = 38.1 bits (87), Expect = 0.005 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Frame = -3 Query: 395 KDTVITIWHYHGGCHVGK-----VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMM 231 K T + H C G+ VD RV G L V DGS +PG NPQ T+M + Sbjct: 423 KATNLMTIHLFSTCPPGEHRDACAVDSYGRVRGVENLFVADGSVIPEAPGVNPQMTIMAL 482
>BETA_ECOLI (P17444) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 556 Score = 36.2 bits (82), Expect = 0.019 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = -3 Query: 380 TIWHYHGGCHVG----KVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMG 228 T +H G C +G VVD + RV G GLRVVD S + N AT +M+G Sbjct: 470 TAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
>BETA_ECO57 (Q8X6C6) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 562 Score = 36.2 bits (82), Expect = 0.019 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = -3 Query: 380 TIWHYHGGCHVG----KVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMG 228 T +H G C +G VVD + RV G GLRVVD S + N AT +M+G Sbjct: 470 TAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
>BETA_BRUSU (Q8G1Z8) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 549 Score = 36.2 bits (82), Expect = 0.019 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Frame = -3 Query: 395 KDTVITIWHYHGGCHVGKV------VDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMM 234 ++ V + +H G C +G V VD + RV+G GLRV D S F R N +M Sbjct: 457 REHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIM 516 Query: 233 MG 228 +G Sbjct: 517 VG 518
>BETA_BRUME (Q8YFY2) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 549 Score = 36.2 bits (82), Expect = 0.019 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Frame = -3 Query: 395 KDTVITIWHYHGGCHVGKV------VDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMM 234 ++ V + +H G C +G V VD + RV+G GLRV D S F R N +M Sbjct: 457 REHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIM 516 Query: 233 MG 228 +G Sbjct: 517 VG 518
>BETA_ECOL6 (Q8FKI9) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 556 Score = 35.8 bits (81), Expect = 0.025 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = -3 Query: 380 TIWHYHGGCHVG----KVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMG 228 T +H G C +G VVD + RV G GLRVVD S + N AT +M+G Sbjct: 470 TAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
>BETA_YERPE (Q8ZGW0) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 567 Score = 34.7 bits (78), Expect = 0.055 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Frame = -3 Query: 404 AICKDTVITIWHYHGGCHVGK----VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVM 237 A ++ T +H C +G VVD Q RV G GLRVVD S + N AT + Sbjct: 462 AFIREHAETAYHPSCSCKMGDDKMAVVDGQGRVHGVQGLRVVDASIMPQIITGNLNATTI 521 Query: 236 MMGRYFGVKI 207 M+ +I Sbjct: 522 MIAEKIADRI 531
>CDH_PHACH (Q01738) Cellobiose dehydrogenase precursor (EC 1.1.99.18) (CDH)| (Cellobiose-quinone oxidoreductase) Length = 773 Score = 34.7 bits (78), Expect = 0.055 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -3 Query: 341 VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYFGVKILRERLGP 186 VVD +V G + L +VD P NPQ T+M KIL GP Sbjct: 722 VVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILALAGGP 773
>Y1310_MYCBO (P64264) Hypothetical GMC-type oxidoreductase Mb1310| Length = 528 Score = 34.7 bits (78), Expect = 0.055 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = -3 Query: 380 TIWHYHGGCHVGK----VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMG 228 T++H G C +G VVD Q RV G GLRV D S + + A +++G Sbjct: 465 TLYHPMGTCRMGSDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIG 519
>Y1279_MYCTU (P64263) Hypothetical GMC-type oxidoreductase Rv1279/MT1316| Length = 528 Score = 34.7 bits (78), Expect = 0.055 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = -3 Query: 380 TIWHYHGGCHVGK----VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMG 228 T++H G C +G VVD Q RV G GLRV D S + + A +++G Sbjct: 465 TLYHPMGTCRMGSDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIG 519
>BETA_XANAC (Q8PPG8) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 556 Score = 34.3 bits (77), Expect = 0.072 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Frame = -3 Query: 404 AICKDTVITIWHYHGGCHVGK----VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVM 237 A + T +H C +G VVD Q RV G GLRV+D S R N AT + Sbjct: 464 AFVRSRAETAYHPSCSCAMGTDAMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLNATTI 523 Query: 236 MM 231 M+ Sbjct: 524 MI 525
>BETA_XANCP (Q8P5D7) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 556 Score = 33.9 bits (76), Expect = 0.095 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = -3 Query: 380 TIWHYHGGCHVGK----VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMM 231 T +H C +G VVD Q RV G GLRV+D S R N AT +M+ Sbjct: 472 TAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLNATTIMI 525
>BETA_PSEAE (Q9HTJ2) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 561 Score = 33.9 bits (76), Expect = 0.095 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -3 Query: 380 TIWHYHGGCHVGK----VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYFGV 213 T +H C +G VVD Q RV G GLRVVD S N AT +MM Sbjct: 472 TAFHPSCSCKMGSDDMAVVDGQGRVHGMEGLRVVDASIMPLIITGNLNATTIMMAEKIAD 531 Query: 212 KI 207 +I Sbjct: 532 RI 533
>BETA_RHIME (P54223) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 549 Score = 33.5 bits (75), Expect = 0.12 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = -3 Query: 374 WHYHGGCHVGK------VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMG 228 +H G C +G VVD + RV+G GLRV D S F N A +M G Sbjct: 464 YHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTG 518
>BETA_AGRT5 (Q8UH55) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 549 Score = 33.1 bits (74), Expect = 0.16 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Frame = -3 Query: 404 AICKDTVITIWHYHGGCHVGK------VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQAT 243 A ++ + + +H G C +G VVD + RV+G GLRV D S F N Sbjct: 454 AFLREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYGNLNGP 513 Query: 242 VMMMG 228 +M G Sbjct: 514 SIMTG 518
>ALKJ_PSEOL (Q00593) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-)| Length = 558 Score = 32.7 bits (73), Expect = 0.21 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = -3 Query: 380 TIWHYHGGCHVGK----VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYFGV 213 TI+H G C +GK VVD ++ G + +RVVD S N A +M+ Sbjct: 466 TIYHPVGTCRMGKDPASVVDPCLKIRGLANIRVVDASIMPHLVAGNTNAPTIMIAENAAE 525 Query: 212 KILR 201 I+R Sbjct: 526 IIMR 529
>GOX_TALFL (Q92452) Glucose oxidase precursor (EC 1.1.3.4) (Glucose| oxyhydrase) (GOD) (Beta-D-glucose:oxygen 1-oxido-reductase) Length = 605 Score = 32.3 bits (72), Expect = 0.28 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Frame = -3 Query: 374 WHYHGGC-----HVGKVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYFGVK 210 WH C +G VVD +V G GLRV+DGS P T + VM + ++G+ Sbjct: 537 WHAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSI----PPTQVSSHVMTI--FYGMA 590 Query: 209 I 207 + Sbjct: 591 L 591
>GOX_ASPNG (P13006) Glucose oxidase precursor (EC 1.1.3.4) (Glucose| oxyhydrase) (GOD) (Beta-D-glucose:oxygen 1-oxido-reductase) Length = 605 Score = 32.3 bits (72), Expect = 0.28 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = -3 Query: 374 WHYHGGC-----HVGKVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYFGVK 210 +H G C +G VVD RV G GLRV+DGS P T + VM + +K Sbjct: 537 YHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSI----PPTQMSSHVMTVFYAMALK 592 Query: 209 I 207 I Sbjct: 593 I 593
>GOX_PENAG (P81156) Glucose oxidase (EC 1.1.3.4) (Glucose oxyhydrase) (GOD)| (Beta-D-glucose:oxygen 1-oxido-reductase) Length = 587 Score = 32.3 bits (72), Expect = 0.28 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Frame = -3 Query: 374 WHYHGGC-----HVGKVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYFGVK 210 WH C +G VVD +V G GLRV+DGS P T + VM + ++G+ Sbjct: 519 WHAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSI----PPTQVSSHVMTI--FYGMA 572 Query: 209 I 207 + Sbjct: 573 L 573
>BETA_PSEPK (Q88CW6) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 565 Score = 32.0 bits (71), Expect = 0.36 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -3 Query: 380 TIWHYHGGCHVGK----VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYFGV 213 T +H C +G VVD + RV G GLRVVD S N AT +M+ Sbjct: 472 TAFHPSCSCKMGTDDMAVVDGEGRVHGMKGLRVVDASIMPLIITGNLNATTIMIAEKISD 531 Query: 212 KI 207 KI Sbjct: 532 KI 533
>ALKJ_PSEPU (Q9WWW2) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-)| Length = 552 Score = 32.0 bits (71), Expect = 0.36 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = -3 Query: 380 TIWHYHGGCHVGK----VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYFGV 213 TI+H G C +GK VVD +V G +RVVD S N A +M+ Sbjct: 466 TIYHPVGTCRMGKDPASVVDPCLQVRGLRNIRVVDASIMPNLVAGNTNAPTIMIAENAAE 525 Query: 212 KILRE 198 I+R+ Sbjct: 526 IIVRK 530
>CHDH_HUMAN (Q8NE62) Choline dehydrogenase, mitochondrial precursor (EC| 1.1.99.1) (CHD) (CDH) Length = 594 Score = 30.4 bits (67), Expect = 1.0 Identities = 17/37 (45%), Positives = 19/37 (51%) Frame = -3 Query: 341 VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMM 231 VVD Q RVLG LRVVD S N A +M+ Sbjct: 527 VVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMI 563
>PNO_MICLT (Q9AJD6) Pyridoxine 4-oxidase (EC 1.1.3.12)| Length = 506 Score = 30.4 bits (67), Expect = 1.0 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = -3 Query: 386 VITIWHYHGGCHVGK----VVDQQHRVLGASGLRVVDGS 282 VIT H G C +GK VVD R+ G L VVDGS Sbjct: 442 VITHHHPSGTCRMGKDEMSVVDADLRLRGLDNLYVVDGS 480
>CHOD_BREST (P22637) Cholesterol oxidase precursor (EC 1.1.3.6) (CHOD)| Length = 552 Score = 30.4 bits (67), Expect = 1.0 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -3 Query: 374 WHYHGGCHVGKVVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATV 240 +H GG + K D R+ GL VVDGS + G NP T+ Sbjct: 491 YHPLGGVLLNKATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTI 535
>BETA_PSESM (Q88AE7) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 568 Score = 29.3 bits (64), Expect = 2.3 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Frame = -3 Query: 380 TIWHYHGGCHVGK----VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMMGRYFGV 213 T +H C +G VVD Q RV G LRVVD S N A +M+ Sbjct: 474 TAYHPSCSCKMGTDEMAVVDGQGRVHGMQNLRVVDASIMPIITTGNLNAPTIMIAEKIAD 533 Query: 212 KI 207 KI Sbjct: 534 KI 535
>RPB2_ASHGO (Q753Q4) DNA-directed RNA polymerase II polypeptide 2 (EC 2.7.7.6)| (RNA polymerase II subunit 2) Length = 1222 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 278 TLSHQQRGALRLQAPGAAGRPPSLHDTHHGSARW*LPCPCK 400 TLSH +R + G +P LH+TH W L CP + Sbjct: 486 TLSHLRRTNTPIGRDGKLAKPRQLHNTH-----WGLVCPAE 521
>DPO3A_BACSU (O34623) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1115 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Frame = +1 Query: 58 MKLLDCLTLVIHTGSQQKLVISFLGHTH------IIKGRCSGIYYTPAAGPSRSLKIFTP 219 + L++ +T +I K+ +S + ++ + KG +GI+ +AG LK P Sbjct: 542 LTLIESITSMIEKEENIKIDLSSISYSDDKTFSLLSKGDTTGIFQLESAGMRSVLKRLKP 601 Query: 220 KYLPIIMTVA*GLVPGDLENV 282 L I+ V PG +EN+ Sbjct: 602 SGLEDIVAVNALYRPGPMENI 622
>RPB2_CANGA (Q6FLD5) DNA-directed RNA polymerase II polypeptide 2 (EC 2.7.7.6)| (RNA polymerase II subunit 2) Length = 1223 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 278 TLSHQQRGALRLQAPGAAGRPPSLHDTHHGSARW*LPCPCK 400 TLSH +R + G +P LH+TH W L CP + Sbjct: 489 TLSHLRRTNTPIGRDGKLAKPRQLHNTH-----WGLVCPAE 524
>RPB2_YEAST (P08518) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (B150) (RNA polymerase II subunit 2) Length = 1224 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 278 TLSHQQRGALRLQAPGAAGRPPSLHDTHHGSARW*LPCPCK 400 TLSH +R + G +P LH+TH W L CP + Sbjct: 491 TLSHLRRTNTPIGRDGKLAKPRQLHNTH-----WGLVCPAE 526
>CHDH_MOUSE (Q8BJ64) Choline dehydrogenase, mitochondrial precursor (EC| 1.1.99.1) (CHD) (CDH) Length = 596 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Frame = -3 Query: 374 WHYHGGCHVGK------VVDQQHRVLGASGLRVVDGSTFSRSPGTNPQATVMMM 231 +H C +G+ VVD Q +V+G LRVVD S N A +M+ Sbjct: 512 YHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGNLNAPTVMI 565
>RPB2_SCHPO (Q02061) DNA-directed RNA polymerase II 138 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) Length = 1210 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +2 Query: 278 TLSHQQRGALRLQAPGAAGRPPSLHDTHHGSARW*LPCPCK 400 TLSH +R + G +P LH+TH W + CP + Sbjct: 477 TLSHLRRTNTPIGRDGKLAKPRQLHNTH-----WGMVCPAE 512
>MFD_ECOLI (P30958) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1148 Score = 28.1 bits (61), Expect = 5.2 Identities = 21/55 (38%), Positives = 28/55 (50%) Frame = +2 Query: 173 TLQLLVLAVPLRSSLQSTCPSS*PWLEGWSLVTWRTLSHQQRGALRLQAPGAAGR 337 T+Q VL VP+ + +Q CP S +L G +LV + R ALR Q A R Sbjct: 100 TMQRGVLIVPVNTLMQRVCPHS--FLHGHALV-MKKGQRLSRDALRTQLDSAGYR 151
>V1A_TAV (P28931) Protein 1A [Includes: ATP-dependent helicase (EC 3.6.1.-);| Methyltransferase] Length = 993 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +1 Query: 61 KLLDCLTLVIHTGSQQKLVISFLGH--THIIKG 153 +LLDCL TG +Q LV+ F G TH ++G Sbjct: 91 ELLDCLDSFPRTGLRQDLVLDFGGSWVTHYLRG 123
>RPB2_ENCCU (Q8SR75) DNA-directed RNA polymerase II polypeptide 2 (EC 2.7.7.6)| (RNA polymerase II subunit 2) Length = 1141 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +2 Query: 278 TLSHQQRGALRLQAPGAAGRPPSLHDTHHGSARW*LPCPCK 400 TLSH +R ++ G P LH+TH W + CP + Sbjct: 450 TLSHLRRVNTPIEKEGKLAAPRQLHNTH-----WGMVCPAE 485
>BETA_STAXY (Q9X2M2) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 560 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Frame = -3 Query: 380 TIWHYHGGCHVGKVVDQQH-------RVLGASGLRVVDGSTFSRSPGTNPQATVMMM 231 T H C +G D+ +V G LRVVD S R+ N + V+MM Sbjct: 469 TALHPSCSCRMGPASDEMSVVDPETFKVHGMENLRVVDASVMPRTTNGNIHSPVLMM 525
>BETA_STAS1 (Q4A0Q1) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 560 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Frame = -3 Query: 380 TIWHYHGGCHVGKVVDQQH-------RVLGASGLRVVDGSTFSRSPGTNPQATVMMM 231 T H C +G D+ +V G LRVVD S R+ N + V+MM Sbjct: 469 TALHPSCSCRMGPASDEMSVVDPETFKVHGMENLRVVDASVMPRTTNGNIHSPVLMM 525
>POLS_RUBV (P08564) Structural polyprotein [Contains: Spike glycoprotein E1;| Spike glycoprotein E2] (Fragment) Length = 522 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/28 (39%), Positives = 14/28 (50%) Frame = -2 Query: 381 HHLALPWWVSCREGGRPAAPGAWSLRAP 298 HH +P + C GR + PG WS P Sbjct: 16 HHRPVPAYPVCSPCGRASPPGNWSFLPP 43
>ZN516_HUMAN (Q92618) Zinc finger protein 516| Length = 1163 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Frame = +2 Query: 230 PSS*PWLEGWSLVTWRTLSHQQRGALRLQA-PGAAGRPPSLH 352 P P L T T + RG LQA PG AG PP LH Sbjct: 999 PREPPSKAAQELRTLATCAAGSRGDAALQAQPGVAGAPPVLH 1040
>LPXD_BURPS (Q63T22) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase| (EC 2.3.1.-) Length = 361 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Frame = +1 Query: 151 GRCSGIYYTPA--AGPSRSLKIFTPKYLPIIMTVA*GLV---PGDLENV 282 GRC P AGP + + PKYL + T G V PGDLE + Sbjct: 20 GRCEVGALAPLDQAGPRQLAFLANPKYLAQVETTGAGAVLIAPGDLEKL 68
>LPXD_BURMA (Q62JD4) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase| (EC 2.3.1.-) Length = 361 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Frame = +1 Query: 151 GRCSGIYYTPA--AGPSRSLKIFTPKYLPIIMTVA*GLV---PGDLENV 282 GRC P AGP + + PKYL + T G V PGDLE + Sbjct: 20 GRCEVGALAPLDQAGPRQLAFLANPKYLAQVETTGAGAVLIAPGDLEKL 68
>GCH1_DICDI (Q94465) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)| Length = 232 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -3 Query: 368 YHGGCHVGKVVDQQHRVLGASGL 300 +HG CH+G + DQ +VLG S L Sbjct: 128 FHGKCHIGYIPDQ--KVLGLSKL 148
>PMPH_CHLMU (Q9PL44) Probable outer membrane protein pmpH precursor| (Polymorphic membrane protein H) Length = 980 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 70 DCLTLVIHTGSQQKLVISFLGHTHIIKGRCSGIYYTPAAGPS 195 DC+ I+ G++Q +IS G I G+ + +T + GP+ Sbjct: 48 DCVFASIYAGAEQGSIISANGQNLTIVGQNHTLSFTDSQGPA 89
>P3C2B_HUMAN (O00750) Phosphatidylinositol-4-phosphate 3-kinase C2| domain-containing beta polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-beta) (PtdIns-3-kinase C2 beta) (PI3K-C2beta) (C2-PI3K) Length = 1634 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = +1 Query: 94 TGSQQKLVISFLGHTHIIK--GRCSGIYYTPAAGPSRSLKIFTP 219 TGS +L +SF TH +K GR S ++ R KIF P Sbjct: 1344 TGSDDRLTLSFASRTHTLKSSGRISDVFL------CRHEKIFHP 1381
>CMAH_XENLA (Q8AVF5) Cytidine monophosphate-N-acetylneuraminic acid hydroxylase| (EC 1.14.18.2) (CMP-N-acetylneuraminate monooxygenase) (CMP-N-acetylneuraminic acid hydroxylase) (CMP-NeuAc hydroxylase) (CMP-Neu5Ac hydroxylase) Length = 591 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Frame = -2 Query: 387 GNHHLAL-PWWVSCREGGRPAAPGAWSLRAPRC*WLNVLQVTRDQPSSHGHDD 232 GN H+ PW + G A G W L P C WL L SH H D Sbjct: 154 GNKHMVFDPWLI-----GPAFARGWWLLHEPPCDWLERLCRADLIYISHMHSD 201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,899,364 Number of Sequences: 219361 Number of extensions: 1496335 Number of successful extensions: 3791 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 3717 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3791 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
