| Clone Name | rbaet113h11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450625.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2027 Score = 285 bits (144), Expect = 6e-74 Identities = 314/368 (85%), Gaps = 7/368 (1%) Strand = Plus / Minus Query: 45 ttactgggtacagatgaaactcctagactgtcttacattggtgattcacactggatccca 104 |||||||||||||||||||||||||| |||||| | | ||||| ||||||| ||||||| Sbjct: 1986 ttactgggtacagatgaaactcctagcttgtctttcttcggtgaatcacactagatccca 1927 Query: 105 gcaaaaattagtgattt--cttttctaggtcacacacacatcataaaaggcaggtgttca 162 |||| ||||||| |||| ||| ||||||||||||| | | ||||||| ||||| || Sbjct: 1926 gcaataattagtaatttttcttctctaggtcacacata----acaaaaggctggtgtcca 1871 Query: 163 ggaatctactacactccagctgctggtcctagccgttcccttaagatcttcactccaaag 222 |||||| | ||||||||||||||| | ||||| | | |||||| |||| |||||||||| Sbjct: 1870 ggaatcgattacactccagctgctcgacctagtcttccccttaggatcatcactccaaaa 1811 Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggtccctggtgacctggagaacgtt 282 || |||||||||||||||||||||||||||||||| ||||||||||| || || || ||| Sbjct: 1810 tatctgcccatcatcatgaccgtggcttgagggttcgtccctggtgatctagaaaatgtt 1751 Query: 283 gagccatcaacaacgcggagccctgaggctccaagcacccggtgctgctggtcgaccacc 342 |||||||| || || |||| ||||| |||||||||| ||||| ||||| || |||||| Sbjct: 1750 gagccatcgactacacggacgcctgaaactccaagcacacggtgttgctgatcaaccacc 1691 Query: 343 ttccctacatgacacccaccatggtagtgccagatggtgattaccgtgtccttgc-aaat 401 ||||||||||| || ||||||||||||||||||||||| ||||| || ||| ||| |||| Sbjct: 1690 ttccctacatggcatccaccatggtagtgccagatggttattactgtatccctgcaaaat 1631 Query: 402 tgctctag 409 |||||||| Sbjct: 1630 tgctctag 1623
>dbj|AK072899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148B06, full insert sequence Length = 2027 Score = 285 bits (144), Expect = 6e-74 Identities = 314/368 (85%), Gaps = 7/368 (1%) Strand = Plus / Minus Query: 45 ttactgggtacagatgaaactcctagactgtcttacattggtgattcacactggatccca 104 |||||||||||||||||||||||||| |||||| | | ||||| ||||||| ||||||| Sbjct: 1986 ttactgggtacagatgaaactcctagcttgtctttcttcggtgaatcacactagatccca 1927 Query: 105 gcaaaaattagtgattt--cttttctaggtcacacacacatcataaaaggcaggtgttca 162 |||| ||||||| |||| ||| ||||||||||||| | | ||||||| ||||| || Sbjct: 1926 gcaataattagtaatttttcttctctaggtcacacata----acaaaaggctggtgtcca 1871 Query: 163 ggaatctactacactccagctgctggtcctagccgttcccttaagatcttcactccaaag 222 |||||| | ||||||||||||||| | ||||| | | |||||| |||| |||||||||| Sbjct: 1870 ggaatcgattacactccagctgctcgacctagtcttccccttaggatcatcactccaaaa 1811 Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggtccctggtgacctggagaacgtt 282 || |||||||||||||||||||||||||||||||| ||||||||||| || || || ||| Sbjct: 1810 tatctgcccatcatcatgaccgtggcttgagggttcgtccctggtgatctagaaaatgtt 1751 Query: 283 gagccatcaacaacgcggagccctgaggctccaagcacccggtgctgctggtcgaccacc 342 |||||||| || || |||| ||||| |||||||||| ||||| ||||| || |||||| Sbjct: 1750 gagccatcgactacacggacgcctgaaactccaagcacacggtgttgctgatcaaccacc 1691 Query: 343 ttccctacatgacacccaccatggtagtgccagatggtgattaccgtgtccttgc-aaat 401 ||||||||||| || ||||||||||||||||||||||| ||||| || ||| ||| |||| Sbjct: 1690 ttccctacatggcatccaccatggtagtgccagatggttattactgtatccctgcaaaat 1631 Query: 402 tgctctag 409 |||||||| Sbjct: 1630 tgctctag 1623
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 184 bits (93), Expect = 1e-43 Identities = 166/189 (87%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 222 gtacctgcccatcatcatgaccgtggcttgagggttggtccctggtgacctggagaacgt 281 |||||||||||||||||||||||||||||||||||| ||||||||||| || || || || Sbjct: 11867457 gtacctgcccatcatcatgaccgtggcttgagggttcgtccctggtgatctagaaaatgt 11867516 Query: 282 tgagccatcaacaacgcggagccctgaggctccaagcacccggtgctgctggtcgaccac 341 ||||||||| || || |||| ||||| |||||||||| ||||| ||||| || ||||| Sbjct: 11867517 tgagccatcgactacacggacgcctgaaactccaagcacacggtgttgctgatcaaccac 11867576 Query: 342 cttccctacatgacacccaccatggtagtgccagatggtgattaccgtgtccttgc-aaa 400 |||||||||||| || ||||||||||||||||||||||| ||||| || ||| ||| ||| Sbjct: 11867577 cttccctacatggcatccaccatggtagtgccagatggttattactgtatccctgcaaaa 11867636 Query: 401 ttgctctag 409 ||||||||| Sbjct: 11867637 ttgctctag 11867645 Score = 117 bits (59), Expect = 3e-23 Identities = 150/179 (83%), Gaps = 6/179 (3%) Strand = Plus / Plus Query: 45 ttactgggtacagatgaaactcctagactgtcttacattggtgattcacactggatccca 104 |||||||||||||||||||||||||| |||||| | | ||||| ||||||| ||||||| Sbjct: 11867178 ttactgggtacagatgaaactcctagcttgtctttcttcggtgaatcacactagatccca 11867237 Query: 105 gcaaaaattagtgattt--cttttctaggtcacacacacatcataaaaggcaggtgttca 162 |||| ||||||| |||| ||| ||||||||||||| | | ||||||| ||||| || Sbjct: 11867238 gcaataattagtaatttttcttctctaggtcacacata----acaaaaggctggtgtcca 11867293 Query: 163 ggaatctactacactccagctgctggtcctagccgttcccttaagatcttcactccaaa 221 |||||| | ||||||||||||||| | ||||| | | |||||| |||| |||||||||| Sbjct: 11867294 ggaatcgattacactccagctgctcgacctagtcttccccttaggatcatcactccaaa 11867352
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 184 bits (93), Expect = 1e-43 Identities = 166/189 (87%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 222 gtacctgcccatcatcatgaccgtggcttgagggttggtccctggtgacctggagaacgt 281 |||||||||||||||||||||||||||||||||||| ||||||||||| || || || || Sbjct: 48947 gtacctgcccatcatcatgaccgtggcttgagggttcgtccctggtgatctagaaaatgt 49006 Query: 282 tgagccatcaacaacgcggagccctgaggctccaagcacccggtgctgctggtcgaccac 341 ||||||||| || || |||| ||||| |||||||||| ||||| ||||| || ||||| Sbjct: 49007 tgagccatcgactacacggacgcctgaaactccaagcacacggtgttgctgatcaaccac 49066 Query: 342 cttccctacatgacacccaccatggtagtgccagatggtgattaccgtgtccttgc-aaa 400 |||||||||||| || ||||||||||||||||||||||| ||||| || ||| ||| ||| Sbjct: 49067 cttccctacatggcatccaccatggtagtgccagatggttattactgtatccctgcaaaa 49126 Query: 401 ttgctctag 409 ||||||||| Sbjct: 49127 ttgctctag 49135 Score = 117 bits (59), Expect = 3e-23 Identities = 150/179 (83%), Gaps = 6/179 (3%) Strand = Plus / Plus Query: 45 ttactgggtacagatgaaactcctagactgtcttacattggtgattcacactggatccca 104 |||||||||||||||||||||||||| |||||| | | ||||| ||||||| ||||||| Sbjct: 48668 ttactgggtacagatgaaactcctagcttgtctttcttcggtgaatcacactagatccca 48727 Query: 105 gcaaaaattagtgattt--cttttctaggtcacacacacatcataaaaggcaggtgttca 162 |||| ||||||| |||| ||| ||||||||||||| | | ||||||| ||||| || Sbjct: 48728 gcaataattagtaatttttcttctctaggtcacacata----acaaaaggctggtgtcca 48783 Query: 163 ggaatctactacactccagctgctggtcctagccgttcccttaagatcttcactccaaa 221 |||||| | ||||||||||||||| | ||||| | | |||||| |||| |||||||||| Sbjct: 48784 ggaatcgattacactccagctgctcgacctagtcttccccttaggatcatcactccaaa 48842
>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1506_A04 Length = 114998 Score = 184 bits (93), Expect = 1e-43 Identities = 166/189 (87%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 222 gtacctgcccatcatcatgaccgtggcttgagggttggtccctggtgacctggagaacgt 281 |||||||||||||||||||||||||||||||||||| ||||||||||| || || || || Sbjct: 110275 gtacctgcccatcatcatgaccgtggcttgagggttcgtccctggtgatctagaaaatgt 110334 Query: 282 tgagccatcaacaacgcggagccctgaggctccaagcacccggtgctgctggtcgaccac 341 ||||||||| || || |||| ||||| |||||||||| ||||| ||||| || ||||| Sbjct: 110335 tgagccatcgactacacggacgcctgaaactccaagcacacggtgttgctgatcaaccac 110394 Query: 342 cttccctacatgacacccaccatggtagtgccagatggtgattaccgtgtccttgc-aaa 400 |||||||||||| || ||||||||||||||||||||||| ||||| || ||| ||| ||| Sbjct: 110395 cttccctacatggcatccaccatggtagtgccagatggttattactgtatccctgcaaaa 110454 Query: 401 ttgctctag 409 ||||||||| Sbjct: 110455 ttgctctag 110463 Score = 117 bits (59), Expect = 3e-23 Identities = 150/179 (83%), Gaps = 6/179 (3%) Strand = Plus / Plus Query: 45 ttactgggtacagatgaaactcctagactgtcttacattggtgattcacactggatccca 104 |||||||||||||||||||||||||| |||||| | | ||||| ||||||| ||||||| Sbjct: 109996 ttactgggtacagatgaaactcctagcttgtctttcttcggtgaatcacactagatccca 110055 Query: 105 gcaaaaattagtgattt--cttttctaggtcacacacacatcataaaaggcaggtgttca 162 |||| ||||||| |||| ||| ||||||||||||| | | ||||||| ||||| || Sbjct: 110056 gcaataattagtaatttttcttctctaggtcacacata----acaaaaggctggtgtcca 110111 Query: 163 ggaatctactacactccagctgctggtcctagccgttcccttaagatcttcactccaaa 221 |||||| | ||||||||||||||| | ||||| | | |||||| |||| |||||||||| Sbjct: 110112 ggaatcgattacactccagctgctcgacctagtcttccccttaggatcatcactccaaa 110170
>ref|XM_482271.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2114 Score = 93.7 bits (47), Expect = 4e-16 Identities = 143/175 (81%) Strand = Plus / Minus Query: 208 atcttcactccaaagtacctgcccatcatcatgaccgtggcttgagggttggtccctggt 267 ||||||||||| | ||| ||||||||||||||||| |||||||| |||||||| |||||| Sbjct: 1868 atcttcactcccatgtatctgcccatcatcatgactgtggcttgcgggttggttcctggt 1809 Query: 268 gacctggagaacgttgagccatcaacaacgcggagccctgaggctccaagcacccggtgc 327 ||||| | || || || ||||| | || || || |||||| | |||| ||| |||| Sbjct: 1808 gacctaaataaggtcgacccatcgatcacacgaaggcctgagacaccaatcacacggtat 1749 Query: 328 tgctggtcgaccaccttccctacatgacacccaccatggtagtgccagatggtga 382 || ||||| |||||||| || ||||| || || |||||||| ||||||||||||| Sbjct: 1748 tgttggtcaaccaccttgcccacatggcatccgccatggtaatgccagatggtga 1694
>dbj|AK068301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146O05, full insert sequence Length = 2115 Score = 93.7 bits (47), Expect = 4e-16 Identities = 143/175 (81%) Strand = Plus / Minus Query: 208 atcttcactccaaagtacctgcccatcatcatgaccgtggcttgagggttggtccctggt 267 ||||||||||| | ||| ||||||||||||||||| |||||||| |||||||| |||||| Sbjct: 1869 atcttcactcccatgtatctgcccatcatcatgactgtggcttgcgggttggttcctggt 1810 Query: 268 gacctggagaacgttgagccatcaacaacgcggagccctgaggctccaagcacccggtgc 327 ||||| | || || || ||||| | || || || |||||| | |||| ||| |||| Sbjct: 1809 gacctaaataaggtcgacccatcgatcacacgaaggcctgagacaccaatcacacggtat 1750 Query: 328 tgctggtcgaccaccttccctacatgacacccaccatggtagtgccagatggtga 382 || ||||| |||||||| || ||||| || || |||||||| ||||||||||||| Sbjct: 1749 tgttggtcaaccaccttgcccacatggcatccgccatggtaatgccagatggtga 1695
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 87.7 bits (44), Expect = 3e-14 Identities = 131/160 (81%) Strand = Plus / Plus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggtccctggtgacctggagaacgtt 282 |||||||||||||||||||| |||||||| |||||||| ||||||||||| | || || Sbjct: 19150322 tacctgcccatcatcatgactgtggcttgcgggttggttcctggtgacctaaataaggtc 19150381 Query: 283 gagccatcaacaacgcggagccctgaggctccaagcacccggtgctgctggtcgaccacc 342 || ||||| | || || || |||||| | |||| ||| |||| || ||||| |||||| Sbjct: 19150382 gacccatcgatcacacgaaggcctgagacaccaatcacacggtattgttggtcaaccacc 19150441 Query: 343 ttccctacatgacacccaccatggtagtgccagatggtga 382 || || ||||| || || |||||||| ||||||||||||| Sbjct: 19150442 ttgcccacatggcatccgccatggtaatgccagatggtga 19150481
>dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04 Length = 163579 Score = 87.7 bits (44), Expect = 3e-14 Identities = 131/160 (81%) Strand = Plus / Plus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggtccctggtgacctggagaacgtt 282 |||||||||||||||||||| |||||||| |||||||| ||||||||||| | || || Sbjct: 72687 tacctgcccatcatcatgactgtggcttgcgggttggttcctggtgacctaaataaggtc 72746 Query: 283 gagccatcaacaacgcggagccctgaggctccaagcacccggtgctgctggtcgaccacc 342 || ||||| | || || || |||||| | |||| ||| |||| || ||||| |||||| Sbjct: 72747 gacccatcgatcacacgaaggcctgagacaccaatcacacggtattgttggtcaaccacc 72806 Query: 343 ttccctacatgacacccaccatggtagtgccagatggtga 382 || || ||||| || || |||||||| ||||||||||||| Sbjct: 72807 ttgcccacatggcatccgccatggtaatgccagatggtga 72846
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggtccctggtg 268 ||||||||||||||||||| ||||||||||| |||||||| |||| Sbjct: 26523772 tacctgcccatcatcatgattgtggcttgaggattggtcccaggtg 26523727
>dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0709F06 Length = 170964 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggtccctggtg 268 ||||||||||||||||||| ||||||||||| |||||||| |||| Sbjct: 135811 tacctgcccatcatcatgattgtggcttgaggattggtcccaggtg 135766
>dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0460H04 Length = 166490 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggtccctggtg 268 ||||||||||||||||||| ||||||||||| |||||||| |||| Sbjct: 57425 tacctgcccatcatcatgattgtggcttgaggattggtcccaggtg 57380
>gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone mth2-85c24, complete sequence Length = 132817 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 340 accttccctacatgacacccaccatggtagtgccagatggtgattaccgtgtc 392 |||||||||||||| || |||||||| |||||||| || ||||| || ||||| Sbjct: 31851 accttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtc 31903 Score = 48.1 bits (24), Expect = 0.022 Identities = 30/32 (93%) Strand = Plus / Plus Query: 223 tacctgcccatcatcatgaccgtggcttgagg 254 |||||||||||||||||||| || |||||||| Sbjct: 31734 tacctgcccatcatcatgacagtagcttgagg 31765
>ref|XM_473573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1776 Score = 48.1 bits (24), Expect = 0.022 Identities = 40/44 (90%), Gaps = 1/44 (2%) Strand = Plus / Minus Query: 364 tggtagtgccagatggtgattaccgtgtccttgca-aattgctc 406 ||||||||||||||||| || || ||||||||||| |||||||| Sbjct: 1571 tggtagtgccagatggtcatgacggtgtccttgcagaattgctc 1528
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.022 Identities = 40/44 (90%), Gaps = 1/44 (2%) Strand = Plus / Minus Query: 364 tggtagtgccagatggtgattaccgtgtccttgca-aattgctc 406 ||||||||||||||||| || || ||||||||||| |||||||| Sbjct: 28845422 tggtagtgccagatggtcatgacggtgtccttgcagaattgctc 28845379
>dbj|AK106787.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-A02, full insert sequence Length = 2044 Score = 48.1 bits (24), Expect = 0.022 Identities = 40/44 (90%), Gaps = 1/44 (2%) Strand = Plus / Minus Query: 364 tggtagtgccagatggtgattaccgtgtccttgca-aattgctc 406 ||||||||||||||||| || || ||||||||||| |||||||| Sbjct: 1643 tggtagtgccagatggtcatgacggtgtccttgcagaattgctc 1600
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 48.1 bits (24), Expect = 0.022 Identities = 40/44 (90%), Gaps = 1/44 (2%) Strand = Plus / Minus Query: 364 tggtagtgccagatggtgattaccgtgtccttgca-aattgctc 406 ||||||||||||||||| || || ||||||||||| |||||||| Sbjct: 57484 tggtagtgccagatggtcatgacggtgtccttgcagaattgctc 57441
>ref|NM_101128.3| Arabidopsis thaliana FAD binding / aldehyde-lyase/ oxidoreductase/ oxidoreductase, acting on CH-OH group of donors AT1G12570 mRNA, complete cds Length = 2018 Score = 46.1 bits (23), Expect = 0.089 Identities = 50/59 (84%) Strand = Plus / Minus Query: 205 aagatcttcactccaaagtacctgcccatcatcatgaccgtggcttgagggttggtccc 263 ||||||||||| || | |||||||| | |||||| |||||||||||||| || ||||| Sbjct: 1803 aagatcttcacacccatatacctgccaagcatcataaccgtggcttgaggatttgtccc 1745
>gb|BT015417.1| Arabidopsis thaliana At1g12570 gene, complete cds Length = 1719 Score = 46.1 bits (23), Expect = 0.089 Identities = 50/59 (84%) Strand = Plus / Minus Query: 205 aagatcttcactccaaagtacctgcccatcatcatgaccgtggcttgagggttggtccc 263 ||||||||||| || | |||||||| | |||||| |||||||||||||| || ||||| Sbjct: 1694 aagatcttcacacccatatacctgccaagcatcataaccgtggcttgaggatttgtccc 1636
>gb|AC142095.9| Medicago truncatula clone mth2-14c17, complete sequence Length = 110037 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 7 taaacaatttaatggccaatattgcac 33 ||||||||||||||||||| ||||||| Sbjct: 39723 taaacaatttaatggccaagattgcac 39749
>gb|AY069890.1| Arabidopsis thaliana At1g12570/T12C24_9 mRNA, complete cds Length = 2014 Score = 46.1 bits (23), Expect = 0.089 Identities = 50/59 (84%) Strand = Plus / Minus Query: 205 aagatcttcactccaaagtacctgcccatcatcatgaccgtggcttgagggttggtccc 263 ||||||||||| || | |||||||| | |||||| |||||||||||||| || ||||| Sbjct: 1803 aagatcttcacacccatatacctgccaagcatcataaccgtggcttgaggatttgtccc 1745
>gb|AC171534.4| Medicago truncatula chromosome 7 BAC clone mth2-90a20, complete sequence Length = 88903 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 7 taaacaatttaatggccaatattgcac 33 ||||||||||||||||||| ||||||| Sbjct: 61674 taaacaatttaatggccaagattgcac 61700
>ref|NM_105955.2| Arabidopsis thaliana HTH (HOTHEAD); aldehyde-lyase AT1G72970 (HTH) mRNA, complete cds Length = 2107 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 353 gacacccaccatggtagtgccagatggtga 382 |||| |||||||||||||||||||| |||| Sbjct: 1698 gacatccaccatggtagtgccagattgtga 1669
>ref|NM_124572.1| Arabidopsis thaliana FAD binding / aldehyde-lyase/ oxidoreductase/ oxidoreductase, acting on CH-OH group of donors AT5G51930 mRNA, complete cds Length = 1749 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 234 catcatgaccgtggcttgagggttggtccc 263 ||||||||||||||||||||| || ||||| Sbjct: 1737 catcatgaccgtggcttgaggattagtccc 1708
>ref|NM_197434.1| Oryza sativa (japonica cultivar-group) putative mandelonitrile lyase (OSJNBa0096G08.22), mRNA Length = 1761 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggt 260 |||||||| | ||||||||| ||||| ||||||||||| Sbjct: 1721 tacctgccgagcatcatgacggtggcctgagggttggt 1684
>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence Length = 140681 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggt 260 |||||||| | ||||||||| ||||| ||||||||||| Sbjct: 121057 tacctgccgagcatcatgacggtggcctgagggttggt 121020
>gb|DQ447063.1| Arabidopsis thaliana clone pENTR221-At5g51930 glucose-methanol-choline oxidoreductase family protein (At5g51930) mRNA, complete cds Length = 1693 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 234 catcatgaccgtggcttgagggttggtccc 263 ||||||||||||||||||||| || ||||| Sbjct: 1681 catcatgaccgtggcttgaggattagtccc 1652
>gb|AY054193.1| Arabidopsis thaliana At1g72970/F3N23_17 mRNA, complete cds Length = 2103 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 353 gacacccaccatggtagtgccagatggtga 382 |||| |||||||||||||||||||| |||| Sbjct: 1699 gacatccaccatggtagtgccagattgtga 1670
>dbj|AK221002.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-65-L07 Length = 495 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 353 gacacccaccatggtagtgccagatggtga 382 |||| |||||||||||||||||||| |||| Sbjct: 85 gacatccaccatggtagtgccagattgtga 56
>dbj|AK221876.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-16-D04 Length = 1125 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 353 gacacccaccatggtagtgccagatggtga 382 |||| |||||||||||||||||||| |||| Sbjct: 752 gacatccaccatggtagtgccagattgtga 723
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggt 260 |||||||| | ||||||||| ||||| ||||||||||| Sbjct: 19860019 tacctgccgagcatcatgacggtggcctgagggttggt 19859982
>emb|BX817038.1|CNS0ADYQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH82ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2090 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 353 gacacccaccatggtagtgccagatggtga 382 |||| |||||||||||||||||||| |||| Sbjct: 1685 gacatccaccatggtagtgccagattgtga 1656
>gb|BT002648.1| Arabidopsis thaliana At1g72970/F3N23_17 gene, complete cds Length = 1785 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 353 gacacccaccatggtagtgccagatggtga 382 |||| |||||||||||||||||||| |||| Sbjct: 1603 gacatccaccatggtagtgccagattgtga 1574
>gb|AF251031.1|AF251031 Oryza sativa putative mandelonitrile lyase (ACE) mRNA, complete cds Length = 2154 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggt 260 |||||||| | ||||||||| ||||| ||||||||||| Sbjct: 1839 tacctgccgagcatcatgacggtggcctgagggttggt 1802
>dbj|AB027458.2| Arabidopsis thaliana ACE mRNA, complete cds Length = 2096 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 353 gacacccaccatggtagtgccagatggtga 382 |||| |||||||||||||||||||| |||| Sbjct: 1691 gacatccaccatggtagtgccagattgtga 1662
>dbj|AB015478.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15 Length = 81347 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 234 catcatgaccgtggcttgagggttggtccc 263 ||||||||||||||||||||| || ||||| Sbjct: 5044 catcatgaccgtggcttgaggattagtccc 5015
>dbj|AK119563.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-A02, full insert sequence Length = 2045 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggt 260 |||||||| | ||||||||| ||||| ||||||||||| Sbjct: 1753 tacctgccgagcatcatgacggtggcctgagggttggt 1716
>dbj|AK110268.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-C04, full insert sequence Length = 2519 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggt 260 |||||||| | ||||||||| ||||| ||||||||||| Sbjct: 358 tacctgccgagcatcatgacggtggcctgagggttggt 395
>dbj|AK101367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035L09, full insert sequence Length = 2033 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggt 260 |||||||| | ||||||||| ||||| ||||||||||| Sbjct: 1742 tacctgccgagcatcatgacggtggcctgagggttggt 1705
>dbj|AK073777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070C01, full insert sequence Length = 2038 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggt 260 |||||||| | ||||||||| ||||| ||||||||||| Sbjct: 1753 tacctgccgagcatcatgacggtggcctgagggttggt 1716
>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence Length = 116944 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 353 gacacccaccatggtagtgccagatggtga 382 |||| |||||||||||||||||||| |||| Sbjct: 58010 gacatccaccatggtagtgccagattgtga 57981
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggt 260 |||||||| | ||||||||| ||||| ||||||||||| Sbjct: 19871295 tacctgccgagcatcatgacggtggcctgagggttggt 19871258
>dbj|AB027507.1| Arabidopsis thaliana ACE (ADHESION OF CALYX EDGES) gene, complete cds Length = 2928 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 353 gacacccaccatggtagtgccagatggtga 382 |||| |||||||||||||||||||| |||| Sbjct: 2616 gacatccaccatggtagtgccagattgtga 2587
>emb|AL137140.12| Human DNA sequence from clone RP11-137M6 on chromosome 13q21.33-22.3 Contains the SCEL gene for sciellin, a novel gene and a CpG island, complete sequence Length = 193098 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 aaaaattagtgatttcttttc 127 ||||||||||||||||||||| Sbjct: 168808 aaaaattagtgatttcttttc 168828
>gb|AC025417.4|AC025417 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I, complete sequence Length = 106142 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggtccc 263 |||||||| | |||||| |||||||||||||| || ||||| Sbjct: 28651 tacctgccaagcatcataaccgtggcttgaggatttgtccc 28691
>gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome I, complete sequence Length = 118374 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 223 tacctgcccatcatcatgaccgtggcttgagggttggtccc 263 |||||||| | |||||| |||||||||||||| || ||||| Sbjct: 107634 tacctgccaagcatcataaccgtggcttgaggatttgtccc 107674
>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13, complete sequence Length = 148011 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 364 tggtagtgccagatggtgattaccgtgtccttgcaa 399 ||||||||||||||||| || ||||| ||| ||||| Sbjct: 145098 tggtagtgccagatggtcatcaccgtctccctgcaa 145063
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 364 tggtagtgccagatggtgattaccgtgtccttgcaa 399 ||||||||||||||||| || ||||| ||| ||||| Sbjct: 989901 tggtagtgccagatggtcatcaccgtctccctgcaa 989866
>gb|AC004966.2| Homo sapiens PAC clone RP5-1107K15 from 7, complete sequence Length = 134084 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 cagcaaaaattagtgatttctttt 126 |||||||||| ||||||||||||| Sbjct: 6195 cagcaaaaataagtgatttctttt 6172
>gb|DQ366733.1| Uncultured Prochlorococcus marinus clone HOT0M-10G7 genomic sequence Length = 23045 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 gcaaaaattagtgatttctt 124 |||||||||||||||||||| Sbjct: 2776 gcaaaaattagtgatttctt 2757
>emb|X72617.1|PSMDL1 P.serotina mRNA for mandelonitrile lyase Length = 1856 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 gttgagccatcaacaacgcg 299 |||||||||||||||||||| Sbjct: 1571 gttgagccatcaacaacgcg 1552 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 339 caccttccctacatgacacccaccatggtagtgcca 374 ||||||||| ||| | || ||||||||||||||||| Sbjct: 1512 caccttcccaacaaggcatccaccatggtagtgcca 1477
>gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Hospital Oakland Research Institute) complete sequence Length = 242500 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gacaaatagttactgggtac 55 |||||||||||||||||||| Sbjct: 26578 gacaaatagttactgggtac 26559
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16 Length = 346879 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 cggtgctgctggtcgaccac 341 |||||||||||||||||||| Sbjct: 198940 cggtgctgctggtcgaccac 198921
>emb|AL929588.11| Mouse DNA sequence from clone RP23-87L24 on chromosome 2, complete sequence Length = 134787 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 aaattagtgatttcttttct 128 |||||||||||||||||||| Sbjct: 9766 aaattagtgatttcttttct 9785
>gb|AC112200.3| Homo sapiens chromosome 5 clone RP11-54F2, complete sequence Length = 107502 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccgtggcttgagggttggtc 261 |||||||||||||||||||| Sbjct: 30135 ccgtggcttgagggttggtc 30154
>ref|XM_940961.1| PREDICTED: Homo sapiens similar to ankyrin repeat domain 33 (LOC651746), mRNA Length = 2886 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ccgtggcttgagggttggtc 261 |||||||||||||||||||| Sbjct: 887 ccgtggcttgagggttggtc 868
>gb|AC155331.5| Mus musculus 6 BAC RP24-189G6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 160364 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 cattggtgattcacactgga 99 |||||||||||||||||||| Sbjct: 139165 cattggtgattcacactgga 139184
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 364 tggtagtgccagatggtgattaccgtgtccttgcaa 399 ||||||||||||||||| || ||||| ||| ||||| Sbjct: 989899 tggtagtgccagatggtcatcaccgtctccctgcaa 989864
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11, complete sequence Length = 126827 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 364 tggtagtgccagatggtgattaccgtgtccttgcaa 399 ||||||||||||||||| || ||||| ||| ||||| Sbjct: 10116 tggtagtgccagatggtcatcaccgtctccctgcaa 10081
>gb|AC153994.8| Mus musculus 6 BAC RP24-178H18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179333 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 cattggtgattcacactgga 99 |||||||||||||||||||| Sbjct: 21703 cattggtgattcacactgga 21722
>emb|AJ338599.1|HSA338599 Homo sapiens genomic sequence surrounding NotI site, clone NB1-702R Length = 436 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccgtggcttgagggttggtc 261 |||||||||||||||||||| Sbjct: 210 ccgtggcttgagggttggtc 229
>emb|AJ337808.1|HSA337808 Homo sapiens genomic sequence surrounding NotI site, clone NL1-HI16R Length = 809 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccgtggcttgagggttggtc 261 |||||||||||||||||||| Sbjct: 210 ccgtggcttgagggttggtc 229
>emb|AJ341932.1|HSA341932 Homo sapiens genomic sequence surrounding NotI site, clone NL4-CD7C Length = 708 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccgtggcttgagggttggtc 261 |||||||||||||||||||| Sbjct: 210 ccgtggcttgagggttggtc 229
>emb|AJ341931.1|HSA341931 Homo sapiens genomic sequence surrounding NotI site, clone NL4-CD2C Length = 702 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccgtggcttgagggttggtc 261 |||||||||||||||||||| Sbjct: 210 ccgtggcttgagggttggtc 229
>emb|AJ339581.1|HSA339581 Homo sapiens genomic sequence surrounding NotI site, clone NL1-ZE23C Length = 688 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccgtggcttgagggttggtc 261 |||||||||||||||||||| Sbjct: 210 ccgtggcttgagggttggtc 229
>emb|AJ338887.1|HSA338887 Homo sapiens genomic sequence surrounding NotI site, clone NL1-VA2R Length = 864 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccgtggcttgagggttggtc 261 |||||||||||||||||||| Sbjct: 210 ccgtggcttgagggttggtc 229
>emb|AJ339509.1|HSA339509 Homo sapiens genomic sequence surrounding NotI site, clone NL1-ZL19R Length = 787 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccgtggcttgagggttggtc 261 |||||||||||||||||||| Sbjct: 210 ccgtggcttgagggttggtc 229
>emb|CT030234.9| M.truncatula DNA sequence from clone MTH2-22I15 on chromosome 3, complete sequence Length = 112511 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 taggtcacacacacatcata 147 |||||||||||||||||||| Sbjct: 17897 taggtcacacacacatcata 17878
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 ggtgctgctggtcgaccacc 342 |||||||||||||||||||| Sbjct: 5985066 ggtgctgctggtcgaccacc 5985047
>gb|AF412329.1| Prunus dulcis R-oxynitrile lyase isoenzyme 1 precursor (hnl1) gene, complete cds Length = 2087 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 gttgagccatcaacaacgcg 299 |||||||||||||||||||| Sbjct: 1834 gttgagccatcaacaacgcg 1815
>gb|U78814.1|PSU78814 Prunus serotina (R)-(+)-mandelonitrile lyase isoform MDL1 precursor gene, complete cds Length = 2247 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 gttgagccatcaacaacgcg 299 |||||||||||||||||||| Sbjct: 1853 gttgagccatcaacaacgcg 1834 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 339 caccttccctacatgacacccaccatggtagtgcca 374 ||||||||| ||| | || ||||||||||||||||| Sbjct: 1794 caccttcccaacaaggcatccaccatggtagtgcca 1759 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,424,240 Number of Sequences: 3902068 Number of extensions: 4424240 Number of successful extensions: 73191 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72930 Number of HSP's gapped (non-prelim): 254 length of query: 409 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 387 effective length of database: 17,147,199,772 effective search space: 6635966311764 effective search space used: 6635966311764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)