ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet113h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.065
2dbj|AP006851.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.065
3gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence 40 0.25
4gb|AC156394.6| Mus musculus 6 BAC RP24-314D22 (Roswell Park Canc... 38 1.0
5emb|X60292.1|HVLTP1G Hordeum vulgare gene for LTP 1 38 1.0
6emb|X59253.1|HVLTP1 H.vulgare rearranged Ltp1 gene for lipid tra... 38 1.0
7gb|AY435414.1| Prunus persica microsatellite pchgms53 sequence 36 4.0
8gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete seq... 36 4.0
9gb|DQ462885.1| Sorghum bicolor cultivar inbred line LWA88 putati... 36 4.0
10gb|DQ462883.1| Sorghum bicolor cultivar inbred line LWA63 putati... 36 4.0
11gb|DQ462881.1| Sorghum bicolor cultivar inbred line LWA55 putati... 36 4.0
12gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome... 36 4.0
13gb|AF413200.1| Zea mays cultivar Ky21 DWARF8 gene, partial cds 36 4.0
14gb|AF413199.1| Zea mays cultivar IDS28 DWARF8 gene, partial cds 36 4.0
15gb|AC147033.2| Pan troglodytes BAC clone RP43-99I5 from 7, compl... 36 4.0
16gb|AC097111.2| Oryza sativa (japonica cultivar-group) chromosome... 36 4.0
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 36 4.0
18gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome... 36 4.0
19gb|AC125368.7| Medicago truncatula clone mth2-13h15, complete se... 36 4.0
20gb|AC135229.31| Medicago truncatula clone mth2-7m14, complete se... 36 4.0
21gb|AC146574.6| Medicago truncatula clone mth2-145j21, complete s... 36 4.0
22gb|AC161749.3| Medicago truncatula chromosome 7 BAC clone mth2-1... 36 4.0
23gb|AC148347.13| Medicago truncatula clone mth2-26g24, complete s... 36 4.0
24gb|AC150786.21| Medicago truncatula clone mth2-170o9, complete s... 36 4.0
25gb|AC135797.13| Medicago truncatula clone mth2-11f7, complete se... 36 4.0
26gb|AC155344.1| Brassica rapa subsp. pekinensis clone KBrH080A08,... 36 4.0
27emb|AL357503.12| Human DNA sequence from clone RP5-899C14 on chr... 36 4.0
28gb|AC145753.1| Genomic sequence for Medicago truncatula, clone M... 36 4.0
29emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4,... 36 4.0
30emb|AJ720529.1| Gallus gallus mRNA for hypothetical protein, clo... 36 4.0
31emb|CR931741.1| Medicago truncatula chromosome 5 clone mte1-54m2... 36 4.0
32gb|AC151459.30| Medicago truncatula clone mth2-6e6, complete seq... 36 4.0
33gb|AC151727.27| Medicago truncatula clone mth2-25p23, complete s... 36 4.0
34gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete s... 36 4.0
35gb|AC166898.17| Medicago truncatula clone mth2-70l3, complete se... 36 4.0
36gb|AC135319.28| Medicago truncatula clone mth2-6g4, complete seq... 36 4.0
37gb|AC126779.19| Medicago truncatula clone mth2-34m14, complete s... 36 4.0
38gb|L63545.1|CYSCG Lymphocystis disease virus 1, complete genome 36 4.0
39emb|BX537350.25| Zebrafish DNA sequence from clone CH211-257F16 ... 36 4.0
40gb|AC149601.3| Medicago truncatula chromosome 7 BAC clone mth2-2... 36 4.0
41gb|AC150776.2| Medicago truncatula chromosome 7 BAC clone mte1-4... 36 4.0
42gb|AC147963.2| Medicago truncatula chromosome 1 BAC clone mth2-4... 36 4.0
43dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
44dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
45dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
46dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
47dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
48dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
49dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
50gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genom... 36 4.0
51dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
52dbj|AP004176.2| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
53dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
54dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
55dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
56dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
57dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
58dbj|AP005394.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
59dbj|AP006160.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
60dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
61dbj|AP005628.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
62dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
63dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
64emb|AL391516.4|CNS06C88 Human chromosome 14 DNA sequence BAC R-6... 36 4.0
65emb|CR392343.29| Zebrafish DNA sequence from clone CH211-195G6 i... 36 4.0
66dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
67gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 36 4.0
68emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4,... 36 4.0
69emb|CT571261.1| Medicago truncatula chromosome 5 clone mth2-67l4... 36 4.0
70gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 36 4.0 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
            complete sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.065
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    gggaaccaaacagggccttat 21
            |||||||||||||||||||||
Sbjct: 4099 gggaaccaaacagggccttat 4079



 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                      
Query: 1        gggaaccaaacagggccttata 22
                |||||| |||||||||||||||
Sbjct: 19576995 gggaactaaacagggccttata 19577016



 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 2       ggaaccaaacagggcctt 19
               ||||||||||||||||||
Sbjct: 8996777 ggaaccaaacagggcctt 8996794



 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 21      tattaaaaaacgggggga 38
               ||||||||||||||||||
Sbjct: 7139324 tattaaaaaacgggggga 7139341
to top
>dbj|AP006851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
            fosmid clone:OSJNOa183H18
          Length = 38313

 Score = 42.1 bits (21), Expect = 0.065
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    gggaaccaaacagggccttat 21
            |||||||||||||||||||||
Sbjct: 4099 gggaaccaaacagggccttat 4079
to top
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence
          Length = 142376

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     gggaaccaaacagggccttatatt 24
             |||||| |||||||||||||||||
Sbjct: 16826 gggaactaaacagggccttatatt 16849
to top
>gb|AC156394.6| Mus musculus 6 BAC RP24-314D22 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 171323

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      gggaaccaaacagggcctt 19
              |||||||||||||||||||
Sbjct: 123009 gggaaccaaacagggcctt 122991
to top
>emb|X60292.1|HVLTP1G Hordeum vulgare gene for LTP 1
          Length = 2874

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 7    caaacagggccttatatta 25
            |||||||||||||||||||
Sbjct: 1073 caaacagggccttatatta 1055
to top
>emb|X59253.1|HVLTP1 H.vulgare rearranged Ltp1 gene for lipid transfer protein
          Length = 1487

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 7   caaacagggccttatatta 25
           |||||||||||||||||||
Sbjct: 114 caaacagggccttatatta 96
to top
>gb|AY435414.1| Prunus persica microsatellite pchgms53 sequence
          Length = 640

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 3  gaaccaaacagggcctta 20
          ||||||||||||||||||
Sbjct: 17 gaaccaaacagggcctta 34
to top
>gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete sequence
          Length = 138518

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     aaccaaacagggccttat 21
             ||||||||||||||||||
Sbjct: 19895 aaccaaacagggccttat 19912
to top
>gb|DQ462885.1| Sorghum bicolor cultivar inbred line LWA88 putative phosphatase
           2C-unknown protein intergenic region, partial sequence
          Length = 757

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 1   gggaaccaaacagggccttata 22
           |||||| |||||||||||||||
Sbjct: 248 gggaactaaacagggccttata 227
to top
>gb|DQ462883.1| Sorghum bicolor cultivar inbred line LWA63 putative phosphatase
           2C-unknown protein intergenic region, partial sequence
          Length = 757

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 1   gggaaccaaacagggccttata 22
           |||||| |||||||||||||||
Sbjct: 248 gggaactaaacagggccttata 227
to top
>gb|DQ462881.1| Sorghum bicolor cultivar inbred line LWA55 putative phosphatase
           2C-unknown protein intergenic region, partial sequence
          Length = 757

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 1   gggaaccaaacagggccttata 22
           |||||| |||||||||||||||
Sbjct: 248 gggaactaaacagggccttata 227
to top
>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E05,
              complete sequence
          Length = 196284

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 3      gaaccaaacagggcctta 20
              ||||||||||||||||||
Sbjct: 155339 gaaccaaacagggcctta 155356
to top
>gb|AF413200.1| Zea mays cultivar Ky21 DWARF8 gene, partial cds
          Length = 2983

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gggaaccaaacagggcct 18
           ||||||||||||||||||
Sbjct: 764 gggaaccaaacagggcct 781
to top
>gb|AF413199.1| Zea mays cultivar IDS28 DWARF8 gene, partial cds
          Length = 2983

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gggaaccaaacagggcct 18
           ||||||||||||||||||
Sbjct: 764 gggaaccaaacagggcct 781
to top
>gb|AC147033.2| Pan troglodytes BAC clone RP43-99I5 from 7, complete sequence
          Length = 188305

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      gggaaccaaacagggcct 18
              ||||||||||||||||||
Sbjct: 138313 gggaaccaaacagggcct 138296
to top
>gb|AC097111.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1014_C08,
            complete sequence
          Length = 95638

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 3    gaaccaaacagggcctta 20
            ||||||||||||||||||
Sbjct: 1644 gaaccaaacagggcctta 1661
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 5        accaaacagggccttata 22
                ||||||||||||||||||
Sbjct: 23422731 accaaacagggccttata 23422714
to top
>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     gaaccaaacagggcctta 20
             ||||||||||||||||||
Sbjct: 78273 gaaccaaacagggcctta 78290
to top
>gb|AC125368.7| Medicago truncatula clone mth2-13h15, complete sequence
          Length = 124271

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 91204 cttatattaaaaaacggaggga 91225
to top
>gb|AC135229.31| Medicago truncatula clone mth2-7m14, complete sequence
          Length = 111679

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 69016 cttatattaaaaaacggaggga 69037
to top
>gb|AC146574.6| Medicago truncatula clone mth2-145j21, complete sequence
          Length = 133952

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 12679 cttatattaaaaaacggaggga 12700
to top
>gb|AC161749.3| Medicago truncatula chromosome 7 BAC clone mth2-182g1, complete
             sequence
          Length = 47909

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 41748 cttatattaaaaaacggaggga 41727
to top
>gb|AC148347.13| Medicago truncatula clone mth2-26g24, complete sequence
          Length = 114712

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 17   cttatattaaaaaacgggggga 38
            ||||||||||||||||| ||||
Sbjct: 4012 cttatattaaaaaacggaggga 3991
to top
>gb|AC150786.21| Medicago truncatula clone mth2-170o9, complete sequence
          Length = 142649

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 37845 cttatattaaaaaacggaggga 37824
to top
>gb|AC135797.13| Medicago truncatula clone mth2-11f7, complete sequence
          Length = 118242

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 85175 cttatattaaaaaacggaggga 85196



 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 85075 cttatattaaaaaacggaggga 85054
to top
>gb|AC155344.1| Brassica rapa subsp. pekinensis clone KBrH080A08, complete sequence
          Length = 110038

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 28967 cttatattaaaaaacggaggga 28946
to top
>emb|AL357503.12| Human DNA sequence from clone RP5-899C14 on chromosome 20 Contains
            the 3' end of the C20orf101 gene, complete sequence
          Length = 133288

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 7    caaacagggccttatatt 24
            ||||||||||||||||||
Sbjct: 4454 caaacagggccttatatt 4437
to top
>gb|AC145753.1| Genomic sequence for Medicago truncatula, clone MTABa0058M19, complete
             sequence
          Length = 101565

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 83637 cttatattaaaaaacggaggga 83616
to top
>emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0118P14,
             complete sequence
          Length = 158312

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     gaaccaaacagggcctta 20
             ||||||||||||||||||
Sbjct: 59946 gaaccaaacagggcctta 59929
to top
>emb|AJ720529.1| Gallus gallus mRNA for hypothetical protein, clone 19k4
          Length = 2936

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 4    aaccaaacagggccttat 21
            ||||||||||||||||||
Sbjct: 2847 aaccaaacagggccttat 2830
to top
>emb|CR931741.1| Medicago truncatula chromosome 5 clone mte1-54m21, COMPLETE SEQUENCE
          Length = 123541

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 17     cttatattaaaaaacgggggga 38
              ||||||||||||||||| ||||
Sbjct: 103444 cttatattaaaaaacggaggga 103465



 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 17  cttatattaaaaaacgggggga 38
           ||||||||||||||||| ||||
Sbjct: 956 cttatattaaaaaacggaggga 935
to top
>gb|AC151459.30| Medicago truncatula clone mth2-6e6, complete sequence
          Length = 129518

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 91931 cttatattaaaaaacggaggga 91952



 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 91831 cttatattaaaaaacggaggga 91810
to top
>gb|AC151727.27| Medicago truncatula clone mth2-25p23, complete sequence
          Length = 123526

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 49780 cttatattaaaaaacggaggga 49801



 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 49680 cttatattaaaaaacggaggga 49659
to top
>gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete sequence
          Length = 125707

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 17     cttatattaaaaaacgggggga 38
              ||||||||||||||||| ||||
Sbjct: 123228 cttatattaaaaaacggaggga 123249
to top
>gb|AC166898.17| Medicago truncatula clone mth2-70l3, complete sequence
          Length = 100341

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 87110 cttatattaaaaaacggaggga 87089
to top
>gb|AC135319.28| Medicago truncatula clone mth2-6g4, complete sequence
          Length = 120194

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 73775 cttatattaaaaaacggaggga 73796
to top
>gb|AC126779.19| Medicago truncatula clone mth2-34m14, complete sequence
          Length = 128856

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 27977 cttatattaaaaaacggaggga 27998
to top
>gb|L63545.1|CYSCG Lymphocystis disease virus 1, complete genome
          Length = 102653

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    ggccttatattaaaaaac 31
             ||||||||||||||||||
Sbjct: 67249 ggccttatattaaaaaac 67266
to top
>emb|BX537350.25| Zebrafish DNA sequence from clone CH211-257F16 in linkage group 1,
             complete sequence
          Length = 186493

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    tattaaaaaacgggggga 38
             ||||||||||||||||||
Sbjct: 91010 tattaaaaaacgggggga 90993
to top
>gb|AC149601.3| Medicago truncatula chromosome 7 BAC clone mth2-28b24, complete
             sequence
          Length = 112486

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 72710 cttatattaaaaaacggaggga 72689
to top
>gb|AC150776.2| Medicago truncatula chromosome 7 BAC clone mte1-45n16, complete
             sequence
          Length = 107886

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 12906 cttatattaaaaaacggaggga 12885
to top
>gb|AC147963.2| Medicago truncatula chromosome 1 BAC clone mth2-42e19, complete
             sequence
          Length = 106951

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 80122 cttatattaaaaaacggaggga 80101
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 3        gaaccaaacagggcctta 20
                ||||||||||||||||||
Sbjct: 19997283 gaaccaaacagggcctta 19997266



 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                      
Query: 2        ggaaccaaacagggccttatat 23
                ||||||||||||||||| ||||
Sbjct: 11642732 ggaaccaaacagggcctaatat 11642753
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 3        gaaccaaacagggcctta 20
                ||||||||||||||||||
Sbjct: 22818556 gaaccaaacagggcctta 22818573
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                      
Query: 1        gggaaccaaacagggccttata 22
                |||||| |||||||||||||||
Sbjct: 17152516 gggaactaaacagggccttata 17152495



 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 19       tatattaaaaaacggggg 36
                ||||||||||||||||||
Sbjct: 16602090 tatattaaaaaacggggg 16602073
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 4        aaccaaacagggccttat 21
                ||||||||||||||||||
Sbjct: 25575036 aaccaaacagggccttat 25575053



 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                     
Query: 6       ccaaacagggccttatattaaa 27
               ||||||||||||||||| ||||
Sbjct: 8925713 ccaaacagggccttataataaa 8925692



 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 3       gaaccaaacagggcctta 20
               ||||||||||||||||||
Sbjct: 7070763 gaaccaaacagggcctta 7070780



 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 2       ggaaccaaacagggcctt 19
               ||||||||||||||||||
Sbjct: 1038118 ggaaccaaacagggcctt 1038135
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 3        gaaccaaacagggcctta 20
                ||||||||||||||||||
Sbjct: 26304291 gaaccaaacagggcctta 26304308
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 5        accaaacagggccttata 22
                ||||||||||||||||||
Sbjct: 23415759 accaaacagggccttata 23415742
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 4        aaccaaacagggccttat 21
                ||||||||||||||||||
Sbjct: 11742624 aaccaaacagggccttat 11742607
to top
>gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete
              sequence
          Length = 129647

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 5      accaaacagggccttata 22
              ||||||||||||||||||
Sbjct: 105387 accaaacagggccttata 105370
to top
>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0594D10
          Length = 143200

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     aaccaaacagggccttat 21
             ||||||||||||||||||
Sbjct: 29009 aaccaaacagggccttat 29026
to top
>dbj|AP004176.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1057_E05
          Length = 103229

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 6     ccaaacagggccttatattaaa 27
             ||||||||||||||||| ||||
Sbjct: 51870 ccaaacagggccttataataaa 51849
to top
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0495C02
          Length = 151467

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 21     tattaaaaaacgggggga 38
              ||||||||||||||||||
Sbjct: 142743 tattaaaaaacgggggga 142760
to top
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1011A07
          Length = 150590

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     aaccaaacagggccttat 21
             ||||||||||||||||||
Sbjct: 81792 aaccaaacagggccttat 81775
to top
>dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0066H10
          Length = 200968

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     gaaccaaacagggcctta 20
             ||||||||||||||||||
Sbjct: 97452 gaaccaaacagggcctta 97469
to top
>dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0560B08
          Length = 128098

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 4      aaccaaacagggccttat 21
              ||||||||||||||||||
Sbjct: 112306 aaccaaacagggccttat 112323
to top
>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0605D08
          Length = 144340

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 1     gggaaccaaacagggccttata 22
             |||||| |||||||||||||||
Sbjct: 43281 gggaactaaacagggccttata 43302
to top
>dbj|AP005394.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0620H05
          Length = 161808

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 21    tattaaaaaacgggggga 38
             ||||||||||||||||||
Sbjct: 39261 tattaaaaaacgggggga 39278
to top
>dbj|AP006160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1178F07
          Length = 144454

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     ggaaccaaacagggcctt 19
             ||||||||||||||||||
Sbjct: 37223 ggaaccaaacagggcctt 37240
to top
>dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0060K08
          Length = 159626

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     ggaaccaaacagggcctt 19
             ||||||||||||||||||
Sbjct: 69386 ggaaccaaacagggcctt 69403
to top
>dbj|AP005628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1014_E02
          Length = 159669

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 19    tatattaaaaaacggggg 36
             ||||||||||||||||||
Sbjct: 73914 tatattaaaaaacggggg 73897
to top
>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0091C18
          Length = 154416

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 1     gggaaccaaacagggccttata 22
             |||||| |||||||||||||||
Sbjct: 76371 gggaactaaacagggccttata 76350
to top
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1770_H03
          Length = 189893

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 1     gggaaccaaacagggccttata 22
             |||||| |||||||||||||||
Sbjct: 13141 gggaactaaacagggccttata 13120
to top
>emb|AL391516.4|CNS06C88 Human chromosome 14 DNA sequence BAC R-629F19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 167069

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 20    atattaaaaaacgggggg 37
             ||||||||||||||||||
Sbjct: 55145 atattaaaaaacgggggg 55162
to top
>emb|CR392343.29| Zebrafish DNA sequence from clone CH211-195G6 in linkage group 22,
            complete sequence
          Length = 194465

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 21   tattaaaaaacgggggga 38
            ||||||||||||||||||
Sbjct: 3765 tattaaaaaacgggggga 3782
to top
>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022B05
          Length = 151317

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     ggaaccaaacagggcctt 19
             ||||||||||||||||||
Sbjct: 35706 ggaaccaaacagggcctt 35723
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 3        gaaccaaacagggcctta 20
                ||||||||||||||||||
Sbjct: 23128466 gaaccaaacagggcctta 23128483
to top
>emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09,
              complete sequence
          Length = 164911

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 2      ggaaccaaacagggccttatat 23
              ||||||||||||||||| ||||
Sbjct: 125742 ggaaccaaacagggcctaatat 125763
to top
>emb|CT571261.1| Medicago truncatula chromosome 5 clone mth2-67l4, COMPLETE SEQUENCE
          Length = 136545

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 17     cttatattaaaaaacgggggga 38
              ||||||||||||||||| ||||
Sbjct: 129564 cttatattaaaaaacggaggga 129585
to top
>gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH020D15, complete sequence
          Length = 143633

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 17    cttatattaaaaaacgggggga 38
             ||||||||||||||||| ||||
Sbjct: 40202 cttatattaaaaaacggaggga 40223


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 461,670
Number of Sequences: 3902068
Number of extensions: 461670
Number of successful extensions: 126245
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124556
Number of HSP's gapped (non-prelim): 1689
length of query: 38
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 18
effective length of database: 17,155,003,908
effective search space: 308790070344
effective search space used: 308790070344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
to top