ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet113g11 |
|---|---|
| Clone Library Name | barley_pub |
>CH10_ANASP (Q8YQZ9) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 103 Score = 33.5 bits (75), Expect = 0.21 Identities = 19/38 (50%), Positives = 24/38 (63%) Frame = -1 Query: 377 EVEAGKKVLFSDINAYEVDLGTEERHCFCRESDLLAVV 264 EV+ G KVL+S +V LGTEE + E D+LAVV Sbjct: 66 EVKVGDKVLYSKYAGTDVKLGTEE-YVLLSEKDILAVV 102
>CH10_THETN (Q8R5T8) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 94 Score = 32.3 bits (72), Expect = 0.46 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 8/57 (14%) Frame = -1 Query: 410 GEILSVG----VDVS----EVEAGKKVLFSDINAYEVDLGTEERHCFCRESDLLAVV 264 GE+++VG +D EV+ G +V+FS EV L EE + RESD+LA++ Sbjct: 38 GEVVAVGPGQYIDGKRVEPEVKVGDRVIFSKYAGTEVKLDGEE-YLLLRESDILAII 93
>CH10_THEBR (Q60023) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 94 Score = 32.3 bits (72), Expect = 0.46 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 8/57 (14%) Frame = -1 Query: 410 GEILSVGVDVS--------EVEAGKKVLFSDINAYEVDLGTEERHCFCRESDLLAVV 264 GE+++VG EV+ G +V+FS EV L EE + RESD+LA++ Sbjct: 38 GEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEE-YLLLRESDILAII 93
>CH10_ACIAD (Q6F8P5) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 96 Score = 32.0 bits (71), Expect = 0.61 Identities = 20/49 (40%), Positives = 27/49 (55%) Frame = -1 Query: 410 GEILSVGVDVSEVEAGKKVLFSDINAYEVDLGTEERHCFCRESDLLAVV 264 G+I GV +V+AG KVLF V + EE +ESD+LAV+ Sbjct: 47 GQITENGVRALDVKAGDKVLFGTYAGTTVKVNGEE-FLIMKESDILAVL 94
>CH10_PROMM (Q7TUS3) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 103 Score = 29.6 bits (65), Expect = 3.0 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 9/59 (15%) Frame = -1 Query: 413 MGEILSVGV---------DVSEVEAGKKVLFSDINAYEVDLGTEERHCFCRESDLLAVV 264 +GE++ VG EV G KVL+S ++ L T+E + E D+LAVV Sbjct: 45 VGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLSTDE-YVLLSEKDILAVV 102
>ATPF_RICCN (Q92JP3) ATP synthase B chain (EC 3.6.3.14)| Length = 164 Score = 28.9 bits (63), Expect = 5.1 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 1/97 (1%) Frame = +3 Query: 81 KIKSPCPHTFLATKETHVSKTHQITQPMIVNERL*ASKSLRDKDKEFGAYAQHKILGVRS 260 K+K F T + K + MI + K +++K KE + +HK Sbjct: 49 KLKEDAALLFKHTN-AQIKKLETLRSQMIEDSNEVTKKIIQEKTKEIEEFLEHKKSDAIQ 107 Query: 261 CDDSQEIRLSAEAVPLFCSQV-HLISVYVREENLLSS 368 +Q+ S E FC +V L+S Y + L S Sbjct: 108 LMQNQKSTASKELQDEFCDEVIKLVSEYFQSVKLSES 144
>CB010_HUMAN (Q7Z570) Protein C2orf10| Length = 1209 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +2 Query: 281 PTLCRSSASLLFPGPPHKRLCPRREPSF 364 P L R+S L GP RLCP +P+F Sbjct: 1136 PALTRTSLPQLSVGPVGPRLCPGNQPTF 1163
>CDC23_MOUSE (Q8BGZ4) Cell division cycle protein 23 homolog (Anaphase-promoting| complex subunit 8) (APC8) (Cyclosome subunit 8) Length = 597 Score = 28.9 bits (63), Expect = 5.1 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +1 Query: 253 CAHATTAKRSDSLQKQCLSSVPRSTS*AFMSEKRTFFPASTSLTSTPTDKISPI 414 CA T + +L +Q L + + + F PAS S +TPT ++SP+ Sbjct: 537 CAFNDTREEGKALLRQILQLRNQGETPTSDTPGTFFLPASLSANNTPTRRVSPL 590
>RPIA1_YERPS (Q666Q7) Ribose-5-phosphate isomerase A 1 (EC 5.3.1.6)| (Phosphoriboisomerase A 1) (PRI 1) Length = 218 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 234 QHKILGVRSCDDSQEIRLSAEAVPLF-CSQVHLISVYV 344 +H+I G S D+ +L + +P+F C+ V ++ +YV Sbjct: 43 KHQIEGAVSSSDASTAKLKSYGIPVFDCNDVDVLDIYV 80
>RPIA1_YERPE (Q8ZHH8) Ribose-5-phosphate isomerase A 1 (EC 5.3.1.6)| (Phosphoriboisomerase A 1) (PRI 1) Length = 218 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 234 QHKILGVRSCDDSQEIRLSAEAVPLF-CSQVHLISVYV 344 +H+I G S D+ +L + +P+F C+ V ++ +YV Sbjct: 43 KHQIEGAVSSSDASTAKLKSYGIPVFDCNDVDVLDIYV 80
>CPS12_ACTPL (Q69AA9) Capsular polysaccharide phosphotransferase cps12A (EC| 2.7.-.-) (Stealth protein cps12A) Length = 371 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%) Frame = -2 Query: 280 ISWLSSHE--RTPKILCCAY----APNSLSLSRKLLLAQSL 176 I WL E PKI C Y +PN++SL +KLLL Q + Sbjct: 296 IPWLMYFEGKAMPKIDICYYFNIRSPNAISLYKKLLLKQQM 336
>CDC23_HUMAN (Q9UJX2) Cell division cycle protein 23 homolog (Anaphase-promoting| complex subunit 8) (APC8) (Cyclosome subunit 8) Length = 591 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/54 (29%), Positives = 25/54 (46%) Frame = +1 Query: 253 CAHATTAKRSDSLQKQCLSSVPRSTS*AFMSEKRTFFPASTSLTSTPTDKISPI 414 CA T + +L +Q L + + F PAS S +TPT ++SP+ Sbjct: 531 CAFNDTREEGKALLRQILQLRNQGETPTTEVPAPFFLPASLSANNTPTRRVSPL 584
>SUR2_CAEEL (Q10669) Protein sur-2| Length = 1587 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +2 Query: 323 PPHKRLCPRREPSFQLQLH*HQHRPIKSRPS 415 PP K P +E + + H H+P++S PS Sbjct: 1385 PPEKEKSPEKEKEQEQEQHVKAHQPLESTPS 1415 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,818,836 Number of Sequences: 219361 Number of extensions: 1257082 Number of successful extensions: 3214 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3141 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3214 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
