ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet113f07 |
|---|---|
| Clone Library Name | barley_pub |
>METE_SOLSC (Q42662) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) Length = 764 Score = 37.0 bits (84), Expect = 0.012 Identities = 18/21 (85%), Positives = 19/21 (90%) Frame = -2 Query: 332 PALTNMVAAAKLIRTQLASTK 270 PAL NMVAAAKL+RTQLAS K Sbjct: 744 PALENMVAAAKLLRTQLASAK 764
>METE_CATRO (Q42699) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) Length = 765 Score = 36.6 bits (83), Expect = 0.016 Identities = 18/21 (85%), Positives = 19/21 (90%) Frame = -2 Query: 332 PALTNMVAAAKLIRTQLASTK 270 PAL NMV+AAKLIRTQLAS K Sbjct: 745 PALENMVSAAKLIRTQLASAK 765
>METE_ARATH (O50008) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) Length = 765 Score = 33.9 bits (76), Expect = 0.10 Identities = 17/21 (80%), Positives = 18/21 (85%) Frame = -2 Query: 332 PALTNMVAAAKLIRTQLASTK 270 PAL NMV AAKLIR+QLAS K Sbjct: 745 PALKNMVDAAKLIRSQLASAK 765
>METE_MESCR (P93263) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) Length = 765 Score = 32.0 bits (71), Expect = 0.39 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = -2 Query: 332 PALTNMVAAAKLIRTQLASTK 270 PAL+NMVAAAK +R +LAS K Sbjct: 745 PALSNMVAAAKQLRQELASAK 765
>ESSC_STAAR (Q6GK24) Protein essC| Length = 1482 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +1 Query: 115 NSFTITAGLTLARLGRYDKESDYSKQTARLALCPHKTIGSSIIRLFD 255 N I +GL +G +D+ES +T AL HK IR+ D Sbjct: 1408 NIIIIASGLYSDTIGAFDRESKMMVRTINQALISHKISEQEFIRVKD 1454
>FUSB_BURCE (P24127) Fusaric acid resistance protein fusB| Length = 142 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +2 Query: 239 SSGCSISWLLTSCWRAGCG 295 SSGCS S SCWR+ CG Sbjct: 97 SSGCSRSSRSCSCWRSPCG 115
>TXND2_MOUSE (Q6P902) Thioredoxin domain-containing protein 2| (Spermatid-specific thioredoxin-1) (Sptrx-1) (Thioredoxin-4) Length = 515 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/65 (26%), Positives = 29/65 (44%) Frame = +1 Query: 46 TTQPVNNETTHQTHRIQRMPSTCNSFTITAGLTLARLGRYDKESDYSKQTARLALCPHKT 225 +T + T H H + PS+ N T +++ Y K+++YS LA H Sbjct: 67 STPMFSENTVHPRHEVSPKPSSKN--TQLKQENISKSSGYSKQTNYSNTPKSLAKTTHPK 124 Query: 226 IGSSI 240 GS++ Sbjct: 125 QGSTL 129
>NUD12_PONPY (Q5RD76) Peroxisomal NADH pyrophosphatase NUDT12 (EC 3.6.1.22)| (Nucleoside diphosphate-linked moiety X motif 12) (Nudix motif 12) Length = 462 Score = 28.9 bits (63), Expect = 3.3 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -2 Query: 164 YRPSLARVSPAVMVKLLHVDGIRCIL 87 + S RV P V+++++H DG +C+L Sbjct: 314 HNTSYPRVDPVVIMQVIHPDGTKCLL 339
>NUD12_MOUSE (Q9DCN1) Peroxisomal NADH pyrophosphatase NUDT12 (EC 3.6.1.22)| (Nucleoside diphosphate-linked moiety X motif 12) (Nudix motif 12) Length = 462 Score = 28.9 bits (63), Expect = 3.3 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -2 Query: 164 YRPSLARVSPAVMVKLLHVDGIRCIL 87 + S RV P V+++++H DG +C+L Sbjct: 314 HNTSYPRVDPVVIMQVIHPDGTKCLL 339
>NUD12_HUMAN (Q9BQG2) Peroxisomal NADH pyrophosphatase NUDT12 (EC 3.6.1.22)| (Nucleoside diphosphate-linked moiety X motif 12) (Nudix motif 12) Length = 462 Score = 28.9 bits (63), Expect = 3.3 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -2 Query: 164 YRPSLARVSPAVMVKLLHVDGIRCIL 87 + S RV P V+++++H DG +C+L Sbjct: 314 HNTSYPRVDPVVIMQVIHPDGTKCLL 339
>CAR3_DICDI (P35352) Cyclic AMP receptor 3 (cAMP receptor 3)| Length = 490 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 102 HTLYSMCLVGGLIVYRLCGLVAVINRV 22 H Y L+ +IV+ LC + AVINR+ Sbjct: 212 HMTYQFKLINYIIVFLLCWVFAVINRI 238
>IORB_BREDI (Q51698) Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16)| Length = 781 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -2 Query: 176 DSLSYRPSLARVSPAVMVKLLHVDGIRCILC 84 D+ PS+A VSP V V+ +H DGI I+C Sbjct: 41 DTAESTPSIAAVSPNVWVR-VHADGIVDIVC 70
>RBP2_PLAVB (Q00799) Reticulocyte-binding protein 2 precursor (PvRBP-2)| Length = 2867 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +1 Query: 1 DAEQFSINSVYNRDKTTQPVNNETTHQTHRIQRMPSTCN 117 DAE+ S+N+V +K + N T++ T I R+ N Sbjct: 2528 DAEKASVNNVREAEKIRTAIQNVTSYDTEIISRLSEMNN 2566
>KIN4_YEAST (Q01919) Serine/threonine-protein kinase KIN4 (EC 2.7.11.1)| Length = 800 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +1 Query: 22 NSVYNRDKTTQPVNNETTHQTHRIQRMPSTCNSFTITAGLTLARLGR 162 N V +RD+ + NNE H H+ QR +T + I + L G+ Sbjct: 13 NVVTDRDRHSLQRNNEILHPIHKNQRKHATFGPYIIGSTLGEGEFGK 59
>RASA2_MOUSE (P58069) Ras GTPase-activating protein 2 (GAP1m)| Length = 848 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = +1 Query: 34 NRDKTTQPVNNETTHQTHRIQRMPSTCNSFTITAGLTLARLGRYDKESDYSKQTARLALC 213 + D+ T+ + + T ++Q+M TC S + G KE YSK T ++ Sbjct: 753 DEDRETERIYSIFTLSLLKLQKMEETCGSIAVYQG--------PQKEPGYSKFTIEDSVA 804 Query: 214 PHKTI 228 KTI Sbjct: 805 TFKTI 809
>RF1_XYLFT (Q87A17) Peptide chain release factor 1 (RF-1)| Length = 361 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = +1 Query: 82 THRIQRMPSTCNSFTI-TAGLTLARLGRYDKESDYSKQTARLALCPHKTIGS 234 THR+QR+P+T + I T+ T+A + D+ +D S A L + ++ G+ Sbjct: 181 THRVQRVPATESQGRIHTSAATVAIIPEADEIADISINPADLKIDTFRSSGA 232
>RF1_XYLFA (Q9PA71) Peptide chain release factor 1 (RF-1)| Length = 361 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = +1 Query: 82 THRIQRMPSTCNSFTI-TAGLTLARLGRYDKESDYSKQTARLALCPHKTIGS 234 THR+QR+P+T + I T+ T+A + D+ +D S A L + ++ G+ Sbjct: 181 THRVQRVPATESQGRIHTSAATVAIIPEADEIADISINPADLKIDTFRSSGA 232
>RGS11_HUMAN (O94810) Regulator of G-protein signaling 11 (RGS11)| Length = 467 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -3 Query: 232 YLLFCGDRAPNEPFVS 185 YL FCG R P++P VS Sbjct: 251 YLSFCGQRGPHDPLVS 266
>RF1_LEPIN (Q8F9S6) Peptide chain release factor 1 (RF-1)| Length = 354 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = +1 Query: 82 THRIQRMPSTCNSFTI-TAGLTLARLGRYDKE 174 THR+QR+PST + I T+ +T+A L D+E Sbjct: 177 THRVQRIPSTESGGRIHTSAVTVAVLPEADEE 208
>RF1_LEPIC (Q72W38) Peptide chain release factor 1 (RF-1)| Length = 354 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = +1 Query: 82 THRIQRMPSTCNSFTI-TAGLTLARLGRYDKE 174 THR+QR+PST + I T+ +T+A L D+E Sbjct: 177 THRVQRIPSTESGGRIHTSAVTVAVLPEADEE 208 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,966,777 Number of Sequences: 219361 Number of extensions: 927844 Number of successful extensions: 2151 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2151 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
