ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet113f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ417517.1|OSA417517 Oryza sativa partial mRNA for H+-transp... 109 4e-21
2dbj|AK072694.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 4e-21
3ref|NM_195647.1| Oryza sativa (japonica cultivar-group) putative... 94 3e-16
4gb|AC131968.1| Oryza sativa (japonica cultivar-group) chromosome... 94 3e-16
5gb|AC021892.16| Genomic sequence for Oryza sativa, Nipponbare st... 94 3e-16
6dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 94 3e-16
8gb|AY108441.1| Zea mays PCO083558 mRNA sequence 68 2e-08
9gb|BT018752.1| Zea mays clone EL01N0523B01.d mRNA sequence 64 2e-07
10gb|AF023858.1|AF023858 Solanum tuberosum ATP synthase gamma chai... 58 1e-05
11ref|NM_128864.2| Arabidopsis thaliana hydrogen-transporting ATP ... 54 2e-04
12gb|BT000409.1| Arabidopsis thaliana mitochondrial F1-ATPase, gam... 54 2e-04
13gb|AY136289.1| Arabidopsis thaliana mitochondrial F1-ATPase, gam... 54 2e-04
14gb|AY102152.1| Arabidopsis thaliana At2g33040/F25I18.22 mRNA, co... 54 2e-04
15gb|AC003033.3| Arabidopsis thaliana chromosome 2 BAC T21L14 geno... 54 2e-04
16gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I18 ma... 54 2e-04
17gb|AY062627.1| Arabidopsis thaliana mitochondrial F1-ATPase, gam... 54 2e-04
18gb|AY039513.1| Arabidopsis thaliana At2g33040/F25I18.22 mRNA, co... 54 2e-04
19emb|BX820526.1|CNS0A9P1 Arabidopsis thaliana Full-length cDNA Co... 54 2e-04
20emb|BX819675.1|CNS0A9BS Arabidopsis thaliana Full-length cDNA Co... 54 2e-04
21gb|AY086685.1| Arabidopsis thaliana clone 26812 mRNA, complete s... 54 2e-04
22dbj|D88374.1| Arabidopsis thaliana mRNA for gamma subunit of mit... 54 2e-04
23dbj|AB194067.1| Ipomoea nil mRNA for mitochondrial F1-ATPase gam... 50 0.004
24emb|BX548171.4| Zebrafish DNA sequence from clone DKEY-152J20 in... 44 0.22
25emb|BX469923.7| Zebrafish DNA sequence from clone RP71-3J3 in li... 44 0.22
26gb|AC099791.2| Homo sapiens chromosome 1 clone RP11-430G17, comp... 42 0.86
27gb|AC022348.2|AC022348 Drosophila melanogaster, chromosome X, re... 42 0.86
28gb|AE003508.4| Drosophila melanogaster chromosome X, section 60 ... 42 0.86
29dbj|D14699.1|IPBF1ATPG Ipomoea batatas mRNA for F1-ATPase gammma... 42 0.86
30ref|NM_105208.1| Arabidopsis thaliana CYP96A3; heme binding / ir... 40 3.4
31gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 3.4
32ref|XM_585301.2| PREDICTED: Bos taurus similar to Ubiquitin-prot... 40 3.4
33ref|XM_615804.2| PREDICTED: Bos taurus similar to SORCS receptor... 40 3.4
34gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome... 40 3.4
35emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome... 40 3.4
36emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 3.4
37dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 3.4
38gb|AC074031.16| Homo sapiens 12 BAC RP11-272K23 (Roswell Park Ca... 40 3.4
39gb|AF528573.1| Arabidopsis thaliana ecotype Lisse-2 putative cyt... 40 3.4
40gb|AF528572.1| Arabidopsis thaliana ecotype Ita-0 putative cytoc... 40 3.4
41gb|AF528571.1| Arabidopsis thaliana ecotype Gr-3 putative cytoch... 40 3.4
42gb|AF528570.1| Arabidopsis thaliana ecotype Chi-1 putative cytoc... 40 3.4
43gb|AF528569.1| Arabidopsis thaliana ecotype Bs-1 putative cytoch... 40 3.4
44gb|AF528568.1| Arabidopsis thaliana ecotype Bla-1 putative cytoc... 40 3.4
45gb|AF528567.1| Arabidopsis thaliana ecotype Kas-1 putative cytoc... 40 3.4
46gb|AF528566.1| Arabidopsis thaliana ecotype Cvi-0 putative cytoc... 40 3.4
47gb|AC004512.2|T8F5 Arabidopsis thaliana chromosome 1 BAC T8F5 se... 40 3.4
48gb|AF087753.1|AF087753 Oryctolagus cuniculus clone Lb 80-H immun... 40 3.4
49gb|AC026911.15| Mus musculus chromosome 1, clone RP23-190F21, co... 40 3.4 
>emb|AJ417517.1|OSA417517 Oryza sativa partial mRNA for H+-transporting ATP synthase (xd1
           gene)
          Length = 599

 Score =  109 bits (55), Expect = 4e-21
 Identities = 82/91 (90%)
 Strand = Plus / Minus

                                                                       
Query: 158 agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 217
           ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| ||||
Sbjct: 499 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 440

                                          
Query: 218 tgatagatgcttgacgtgtcctgttgtatgt 248
           |||||||||||||||||||||||||||||||
Sbjct: 439 tgatagatgcttgacgtgtcctgttgtatgt 409
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>dbj|AK072694.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135E20, full
            insert sequence
          Length = 1413

 Score =  109 bits (55), Expect = 4e-21
 Identities = 82/91 (90%)
 Strand = Plus / Minus

                                                                        
Query: 158  agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 217
            ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| ||||
Sbjct: 1049 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 990

                                           
Query: 218  tgatagatgcttgacgtgtcctgttgtatgt 248
            |||||||||||||||||||||||||||||||
Sbjct: 989  tgatagatgcttgacgtgtcctgttgtatgt 959
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>ref|NM_195647.1| Oryza sativa (japonica cultivar-group) putative ATP synthase gamma
            chain, mitochondrial precursor (OSJNBa0053D03.10), mRNA
          Length = 1107

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                        
Query: 170  atccctcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgctt 229
            |||||||||| ||||| || || || || |||||| ||||||| ||||||||||||||||
Sbjct: 1105 atccctcaagggcagaagcgccagagataatctcaatgagctctgtagtgatagatgctt 1046

                               
Query: 230  gacgtgtcctgttgtatgt 248
            |||||||||||||||||||
Sbjct: 1045 gacgtgtcctgttgtatgt 1027
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>gb|AC131968.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0053D03, complete sequence
          Length = 150496

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                         
Query: 158   agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 217
             ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| ||||
Sbjct: 24040 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 23981

                                    
Query: 218   tgatagatgcttgacgtgtcctg 240
             |||||||||||||||||||||||
Sbjct: 23980 tgatagatgcttgacgtgtcctg 23958
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>gb|AC021892.16| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0053D03, from chromosome 10, complete sequence
          Length = 199113

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                         
Query: 158   agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 217
             ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| ||||
Sbjct: 35961 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 36020

                                    
Query: 218   tgatagatgcttgacgtgtcctg 240
             |||||||||||||||||||||||
Sbjct: 36021 tgatagatgcttgacgtgtcctg 36043
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 158     agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 217
               ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| ||||
Sbjct: 8220518 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 8220459

                                      
Query: 218     tgatagatgcttgacgtgtcctg 240
               |||||||||||||||||||||||
Sbjct: 8220458 tgatagatgcttgacgtgtcctg 8220436
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 158     agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 217
               ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| ||||
Sbjct: 8225617 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 8225558

                                      
Query: 218     tgatagatgcttgacgtgtcctg 240
               |||||||||||||||||||||||
Sbjct: 8225557 tgatagatgcttgacgtgtcctg 8225535
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>gb|AY108441.1| Zea mays PCO083558 mRNA sequence
          Length = 1514

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 172  ccctcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttga 231
            |||||||| || || ||||| ||||| |||||||| ||||| || ||||| |||||||| 
Sbjct: 1065 ccctcaagggccgatgcaccagatataatctcagtaagctctgtggtgatggatgcttgg 1006

                          
Query: 232  cgtgtcctgttgta 245
            ||||||||||||||
Sbjct: 1005 cgtgtcctgttgta 992
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>gb|BT018752.1| Zea mays clone EL01N0523B01.d mRNA sequence
          Length = 1345

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                        
Query: 170  atccctcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgctt 229
            |||| ||||| || || ||||| ||||| |||||||| ||||| || ||||| |||||||
Sbjct: 1039 atccttcaagggctgatgcaccagatataatctcagtaagctctgtggtgatggatgctt 980

                            
Query: 230  gacgtgtcctgttgta 245
            | ||||||||||||||
Sbjct: 979  ggcgtgtcctgttgta 964
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>gb|AF023858.1|AF023858 Solanum tuberosum ATP synthase gamma chain mRNA, nuclear gene
           encoding mitochondrial protein, partial cds
          Length = 718

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 193 gatatgatctcagtgagctccgtagtgatagatgcttgacgtgtcctgttgta 245
           |||||||||||| | ||||| || ||||||||||||||||| || ||||||||
Sbjct: 475 gatatgatctcaatcagctctgtggtgatagatgcttgacgggttctgttgta 423
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>ref|NM_128864.2| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
            mechanism / hydrogen-transporting ATPase, rotational
            mechanism AT2G33040 mRNA, complete cds
          Length = 1309

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 234
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1098 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 1039

                                       
Query: 235  gtcctgttgtatgtcagtgtaagacgg 261
            |||||||||||||| || || ||||||
Sbjct: 1038 gtcctgttgtatgtgagggtgagacgg 1012
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>gb|BT000409.1| Arabidopsis thaliana mitochondrial F1-ATPase, gamma subunit
           (ATP3_ARATH) (At2g33040) mRNA, complete cds
          Length = 1092

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                       
Query: 175 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 234
           ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 965 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 906

                                      
Query: 235 gtcctgttgtatgtcagtgtaagacgg 261
           |||||||||||||| || || ||||||
Sbjct: 905 gtcctgttgtatgtgagggtgagacgg 879
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>gb|AY136289.1| Arabidopsis thaliana mitochondrial F1-ATPase, gamma subunit
            (ATP3_ARATH) (At2g33040) mRNA, complete cds
          Length = 1265

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 234
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1053 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 994

                                       
Query: 235  gtcctgttgtatgtcagtgtaagacgg 261
            |||||||||||||| || || ||||||
Sbjct: 993  gtcctgttgtatgtgagggtgagacgg 967
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>gb|AY102152.1| Arabidopsis thaliana At2g33040/F25I18.22 mRNA, complete cds
          Length = 978

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                       
Query: 175 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 234
           ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 965 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 906

                                      
Query: 235 gtcctgttgtatgtcagtgtaagacgg 261
           |||||||||||||| || || ||||||
Sbjct: 905 gtcctgttgtatgtgagggtgagacgg 879
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>gb|AC003033.3| Arabidopsis thaliana chromosome 2 BAC T21L14 genomic sequence,
            complete sequence
          Length = 96801

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 234
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 4494 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 4435

                                       
Query: 235  gtcctgttgtatgtcagtgtaagacgg 261
            |||||||||||||| || || ||||||
Sbjct: 4434 gtcctgttgtatgtgagggtgagacgg 4408
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>gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I18 map TEn5, complete
             sequence
          Length = 93158

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                         
Query: 175   tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 234
             ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 81469 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 81410

                                        
Query: 235   gtcctgttgtatgtcagtgtaagacgg 261
             |||||||||||||| || || ||||||
Sbjct: 81409 gtcctgttgtatgtgagggtgagacgg 81383
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>gb|AY062627.1| Arabidopsis thaliana mitochondrial F1-ATPase, gamma subunit
            (ATP3_ARATH) (At2g33040; F25I18.22) mRNA, complete cds
          Length = 1360

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 234
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1064 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 1005

                                       
Query: 235  gtcctgttgtatgtcagtgtaagacgg 261
            |||||||||||||| || || ||||||
Sbjct: 1004 gtcctgttgtatgtgagggtgagacgg 978
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>gb|AY039513.1| Arabidopsis thaliana At2g33040/F25I18.22 mRNA, complete cds
          Length = 1238

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 234
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1051 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 992

                                       
Query: 235  gtcctgttgtatgtcagtgtaagacgg 261
            |||||||||||||| || || ||||||
Sbjct: 991  gtcctgttgtatgtgagggtgagacgg 965
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>emb|BX820526.1|CNS0A9P1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH44ZD12 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1327

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 234
            ||||||||||| || || || || || ||| ||||||| || |||||||| |||||||| 
Sbjct: 1080 tcaagagcagaagctccagagataatgtcaatgagctctgttgtgatagaagcttgacga 1021

                                       
Query: 235  gtcctgttgtatgtcagtgtaagacgg 261
            || ||||||||||| || || ||||||
Sbjct: 1020 gttctgttgtatgtgagggtgagacgg 994
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>emb|BX819675.1|CNS0A9BS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS16ZE03 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1205

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 234
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1068 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 1009

                                       
Query: 235  gtcctgttgtatgtcagtgtaagacgg 261
            |||||||||||||| || || ||||||
Sbjct: 1008 gtcctgttgtatgtgagggtgagacgg 982
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>gb|AY086685.1| Arabidopsis thaliana clone 26812 mRNA, complete sequence
          Length = 1310

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 234
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1098 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 1039

                                       
Query: 235  gtcctgttgtatgtcagtgtaagacgg 261
            |||||||||||||| || || ||||||
Sbjct: 1038 gtcctgttgtatgtgagggtgagacgg 1012
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>dbj|D88374.1| Arabidopsis thaliana mRNA for gamma subunit of mitochondrial
            F1-ATPase, complete cds
          Length = 1267

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 234
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1039 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 980

                                       
Query: 235  gtcctgttgtatgtcagtgtaagacgg 261
            |||||||||||||| || || ||||||
Sbjct: 979  gtcctgttgtatgtgagggtgagacgg 953
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>dbj|AB194067.1| Ipomoea nil mRNA for mitochondrial F1-ATPase gamma subunit, complete
            cds
          Length = 1412

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 193  gatatgatctcagtgagctccgtagtgatagatgcttgacgtgtcctgttgta 245
            ||||||||||| || || || || ||||||||||||||||| || ||||||||
Sbjct: 1033 gatatgatctctgtcagttctgtggtgatagatgcttgacgggttctgttgta 981
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>emb|BX548171.4| Zebrafish DNA sequence from clone DKEY-152J20 in linkage group 14,
             complete sequence
          Length = 174366

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 2     aacaaaatgaaacaaggttgat 23
             ||||||||||||||||||||||
Sbjct: 76742 aacaaaatgaaacaaggttgat 76763
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>emb|BX469923.7| Zebrafish DNA sequence from clone RP71-3J3 in linkage group 5, complete
              sequence
          Length = 151639

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 2      aacaaaatgaaacaaggttgat 23
              ||||||||||||||||||||||
Sbjct: 141154 aacaaaatgaaacaaggttgat 141175
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>gb|AC099791.2| Homo sapiens chromosome 1 clone RP11-430G17, complete sequence
          Length = 239704

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 88     agaaaacaaaaggctgtttcagatt 112
              ||||| |||||||||||||||||||
Sbjct: 116217 agaaaccaaaaggctgtttcagatt 116193
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>gb|AC022348.2|AC022348 Drosophila melanogaster, chromosome X, region 17E-18A, BAC clone
             BACR32F24, complete sequence
          Length = 162307

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   taaagacgatggtgtagagtt 161
             |||||||||||||||||||||
Sbjct: 60105 taaagacgatggtgtagagtt 60125
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>gb|AE003508.4| Drosophila melanogaster chromosome X, section 60 of 74 of the complete
             sequence
          Length = 290619

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   taaagacgatggtgtagagtt 161
             |||||||||||||||||||||
Sbjct: 96699 taaagacgatggtgtagagtt 96719
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>dbj|D14699.1|IPBF1ATPG Ipomoea batatas mRNA for F1-ATPase gammma subunit, complete cds
          Length = 1389

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 217  gtgatagatgcttgacgtgtcctgttgta 245
            ||||||||||||||||| || ||||||||
Sbjct: 1010 gtgatagatgcttgacgggttctgttgta 982
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>ref|NM_105208.1| Arabidopsis thaliana CYP96A3; heme binding / iron ion binding /
           monooxygenase/ oxygen binding AT1G65340 (CYP96A3) mRNA,
           complete cds
          Length = 1512

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 tcatcatccctcaagagcagaggc 188
           ||||||||||||||||| ||||||
Sbjct: 807 tcatcatccctcaagaggagaggc 830
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      ttgatagcgcaacagggcat 38
               ||||||||||||||||||||
Sbjct: 2084600 ttgatagcgcaacagggcat 2084619
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>ref|XM_585301.2| PREDICTED: Bos taurus similar to Ubiquitin-protein ligase E3C
            (LOC508513), mRNA
          Length = 4685

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  cattggaacatacaaataaa 144
            ||||||||||||||||||||
Sbjct: 4643 cattggaacatacaaataaa 4624
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>ref|XM_615804.2| PREDICTED: Bos taurus similar to SORCS receptor 1 isoform a
            (LOC535694), mRNA
          Length = 1284

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   cacaggagaaaacaaaaggc 101
            ||||||||||||||||||||
Sbjct: 1110 cacaggagaaaacaaaaggc 1129
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>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence
          Length = 207475

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   catcatccctcaagagcaga 185
             ||||||||||||||||||||
Sbjct: 71753 catcatccctcaagagcaga 71772
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>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13
          Length = 346186

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   ttgatagcgcaacagggcat 38
            ||||||||||||||||||||
Sbjct: 8671 ttgatagcgcaacagggcat 8690
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>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14
          Length = 291050

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     ttgatagcgcaacagggcat 38
              ||||||||||||||||||||
Sbjct: 163726 ttgatagcgcaacagggcat 163745
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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    ttggaacatacaaataaaga 146
              ||||||||||||||||||||
Sbjct: 917496 ttggaacatacaaataaaga 917477
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>gb|AC074031.16| Homo sapiens 12 BAC RP11-272K23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163912

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     gaaaacaaaaggctgtttca 108
              ||||||||||||||||||||
Sbjct: 109507 gaaaacaaaaggctgtttca 109488
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>gb|AF528573.1| Arabidopsis thaliana ecotype Lisse-2 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 tcatcatccctcaagagcagaggc 188
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528572.1| Arabidopsis thaliana ecotype Ita-0 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 tcatcatccctcaagagcagaggc 188
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528571.1| Arabidopsis thaliana ecotype Gr-3 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 tcatcatccctcaagagcagaggc 188
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528570.1| Arabidopsis thaliana ecotype Chi-1 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 tcatcatccctcaagagcagaggc 188
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528569.1| Arabidopsis thaliana ecotype Bs-1 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 tcatcatccctcaagagcagaggc 188
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528568.1| Arabidopsis thaliana ecotype Bla-1 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 tcatcatccctcaagagcagaggc 188
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528567.1| Arabidopsis thaliana ecotype Kas-1 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 tcatcatccctcaagagcagaggc 188
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528566.1| Arabidopsis thaliana ecotype Cvi-0 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 tcatcatccctcaagagcagaggc 188
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AC004512.2|T8F5 Arabidopsis thaliana chromosome 1 BAC T8F5 sequence, complete sequence
          Length = 88292

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 165   tcatcatccctcaagagcagaggc 188
             ||||||||||||||||| ||||||
Sbjct: 34902 tcatcatccctcaagaggagaggc 34879
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>gb|AF087753.1|AF087753 Oryctolagus cuniculus clone Lb 80-H immunoglobulin heavy chain
           V-D-J region (IgH) gene, partial cds
          Length = 346

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 123 ttcattggaacatacaaata 142
           ||||||||||||||||||||
Sbjct: 320 ttcattggaacatacaaata 301
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>gb|AC026911.15| Mus musculus chromosome 1, clone RP23-190F21, complete sequence
          Length = 239743

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    catcatccctcaagagcaga 185
              ||||||||||||||||||||
Sbjct: 195123 catcatccctcaagagcaga 195142


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,777,112
Number of Sequences: 3902068
Number of extensions: 2777112
Number of successful extensions: 48554
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48484
Number of HSP's gapped (non-prelim): 70
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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