ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet113e04 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 135 bits (339), Expect = 3e-32 Identities = 65/65 (100%), Positives = 65/65 (100%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD Sbjct: 171 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 230 Query: 214 ADIGY 200 ADIGY Sbjct: 231 ADIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 92.8 bits (229), Expect = 2e-19 Identities = 42/57 (73%), Positives = 49/57 (85%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 224 AGWIGWVGRSYLIA+ EKKP +EIIIDV LA+ ++ RGF WPVAAYREL+NG+LV Sbjct: 171 AGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 91.3 bits (225), Expect = 5e-19 Identities = 40/57 (70%), Positives = 48/57 (84%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 224 AGWIGWVGRSYLIA+ EKKP +EIIIDV LA +++ RGF WPVAAYRE +NG+L+ Sbjct: 172 AGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 75.9 bits (185), Expect = 2e-14 Identities = 34/63 (53%), Positives = 46/63 (73%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 +GWIGWVGR YL AVS K P EIII+V LA +I+ G+IWP++A++E I+ DLV D Sbjct: 118 SGWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPISAWQEFISNDLVALD 177 Query: 214 ADI 206 ++ Sbjct: 178 EEV 180
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 74.3 bits (181), Expect = 6e-14 Identities = 33/63 (52%), Positives = 46/63 (73%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AGWIGWVGRSYLI + K P M+E++I+V LA + + GF+WP+AA E +G LV+ D Sbjct: 98 AGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLVMKD 157 Query: 214 ADI 206 ++I Sbjct: 158 SEI 160
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 73.9 bits (180), Expect = 8e-14 Identities = 31/62 (50%), Positives = 44/62 (70%) Frame = -3 Query: 391 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDA 212 GWIGWVGR YL++V+ KP +EII+DV LA + + GF WP+AA++E +G L+ + Sbjct: 119 GWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLIAPND 178 Query: 211 DI 206 DI Sbjct: 179 DI 180
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 72.4 bits (176), Expect = 2e-13 Identities = 34/63 (53%), Positives = 44/63 (69%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AGWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA +EL +G+L D Sbjct: 97 AGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKD 156 Query: 214 ADI 206 +I Sbjct: 157 NEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 72.4 bits (176), Expect = 2e-13 Identities = 34/63 (53%), Positives = 44/63 (69%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AGWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA +EL +G+L D Sbjct: 97 AGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKD 156 Query: 214 ADI 206 +I Sbjct: 157 NEI 159
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 70.5 bits (171), Expect = 9e-13 Identities = 31/63 (49%), Positives = 43/63 (68%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AGWIGWVGR+Y+ S KP +EIIIDV +A I G+IWP AA++E +G+L+ + Sbjct: 116 AGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKEFTSGNLIAKE 175 Query: 214 ADI 206 +I Sbjct: 176 DEI 178
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 70.1 bits (170), Expect = 1e-12 Identities = 31/63 (49%), Positives = 43/63 (68%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AGWIGWVGR+YL A+ + +EI +D+ LA II GF WP AA +EL++G+L D Sbjct: 97 AGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLALPIIATGFAWPAAAVKELLSGELTAKD 156 Query: 214 ADI 206 ++I Sbjct: 157 SEI 159
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 70.1 bits (170), Expect = 1e-12 Identities = 32/63 (50%), Positives = 43/63 (68%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AGWIGWVGRSYL A+ +K A +EI+IDV LA + GF WP+AA++E +G L+ Sbjct: 92 AGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAKA 151 Query: 214 ADI 206 +I Sbjct: 152 DEI 154
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 69.3 bits (168), Expect = 2e-12 Identities = 30/63 (47%), Positives = 43/63 (68%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AGWIGWVGR+YL A+ + +EI +D+ +A II GF WP AA +EL++G+L D Sbjct: 97 AGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAAVKELLSGELTAKD 156 Query: 214 ADI 206 ++I Sbjct: 157 SEI 159
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 67.4 bits (163), Expect = 8e-12 Identities = 34/63 (53%), Positives = 45/63 (71%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AG+IG+VGR YLIAV GE KP +EIIIDV LA ++ +G WP+AA +EL G L+ + Sbjct: 160 AGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKE 219 Query: 214 ADI 206 +I Sbjct: 220 ENI 222
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 64.7 bits (156), Expect = 5e-11 Identities = 29/63 (46%), Positives = 42/63 (66%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AG+IGW GRSYL AV+ +EIIID+ +A + + +GF+WP+AA +E +G L D Sbjct: 119 AGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFSSGKLTARD 178 Query: 214 ADI 206 +I Sbjct: 179 EEI 181
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 58.5 bits (140), Expect = 4e-09 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGE-KKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 218 AGWIGWVGR+YL + + +EI I++ +A I+ GF WP AA +E ++G+L Sbjct: 97 AGWIGWVGRAYLQTIKKQGSNVEQKEIQIELPIALPIMLSGFAWPAAAIKEFLSGELTAK 156 Query: 217 DADI 206 D +I Sbjct: 157 DEEI 160
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 57.4 bits (137), Expect = 8e-09 Identities = 27/63 (42%), Positives = 36/63 (57%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AGWIGW G+ YL KP EIIID+ A + + GF WP+ A +E NG L+ + Sbjct: 120 AGWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGFAWPILALKEFKNGSLLASN 179 Query: 214 ADI 206 +I Sbjct: 180 DEI 182
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 55.1 bits (131), Expect = 4e-08 Identities = 30/63 (47%), Positives = 37/63 (58%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AG IGW GR YL A K PA EIIID LA + + +G WPV A ++ +GDL D Sbjct: 115 AGIIGWSGREYLRASKKTKNPAENEIIIDFALARQCLIKGAAWPVEANKQGRSGDLREKD 174 Query: 214 ADI 206 +I Sbjct: 175 ENI 177
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 47.4 bits (111), Expect = 8e-06 Identities = 27/60 (45%), Positives = 34/60 (56%) Frame = -3 Query: 394 AGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 215 AG +GW GR YL E K EIIID+ A + + G IWPV A ELI+G + V + Sbjct: 118 AGALGWAGRLYL----AESKGPEDEIIIDLPKAIKCLLLGLIWPVQAIPELISGKIRVPE 173
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 30.8 bits (68), Expect = 0.81 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -3 Query: 169 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGEMEPLLYLRN 50 S +QV + + G W VW WC D+GE LYL+N Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE---FLYLKN 249
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 196 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 110 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 196 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 110 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_SHIFL (P67763) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 196 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 110 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOLI (P67762) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 196 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 110 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +1 Query: 70 VPFLHDPISSYTKPTQIDTTSPHPP 144 +P LH P T P DTTSP PP Sbjct: 221 IPVLHSP----TSPEPPDTTSPEPP 241
>AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) (Agglutinin)| (UDA) Length = 372 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -3 Query: 130 LWCRSVWAWCRS**DHGEMEP 68 LWC S+W WC G+ EP Sbjct: 38 LWCCSIWGWC------GDSEP 52
>PPZ1_YEAST (P26570) Serine/threonine-protein phosphatase PP-Z1 (EC 3.1.3.16)| Length = 691 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 102 HQAHTDRHHKPSSSAAH 152 H +HT+R+H PSSS +H Sbjct: 79 HSSHTNRYHFPSSSHSH 95
>YHBP_SALTY (P60822) UPF0306 protein yhbP| Length = 147 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = -3 Query: 196 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 110 L A+ WLA + V W EG LWC + + Sbjct: 4 LTAIGRWLAKQHVVTWCVHHEGELWCANAF 33
>YHBP_SALTI (P60821) UPF0306 protein yhbP| Length = 147 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = -3 Query: 196 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 110 L A+ WLA + V W EG LWC + + Sbjct: 4 LTAIGRWLAKQHVVTWCVHHEGELWCANAF 33
>DNMBP_HUMAN (Q6XZF7) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1577 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +2 Query: 104 PSPHRSTPQALILRCPSDLGPTSQPRTHGS 193 PS S+P RCPSD TSQPR+ S Sbjct: 1424 PSNSESSPS----RCPSDPDSTSQPRSGDS 1449
>CATE_MYCAV (P50979) Catalase HPII (EC 1.11.1.6)| Length = 706 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +2 Query: 5 TRVKREHNSYTRLGS---VS*IQERFHFSMILSAPTPSPHRSTPQA 133 T+ E +Y +G+ V IQ+ F +++ A P PH PQA Sbjct: 137 TKFYTEQGNYDLVGNNFPVFFIQDGIKFPVLVHAVKPEPHNEIPQA 182 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,829,524 Number of Sequences: 219361 Number of extensions: 851253 Number of successful extensions: 2556 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2377 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2553 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
