ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet113e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit... 757 0.0
2ref|NM_184976.1| Oryza sativa (japonica cultivar-group), mRNA 266 5e-68
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 266 5e-68
4gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 geno... 266 5e-68
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 266 5e-68
6dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 5e-68
7dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 5e-68
8dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 5e-68
9gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit prec... 266 5e-68
10gb|AY103687.1| Zea mays PCO106710 mRNA sequence 254 2e-64
11gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, co... 46 0.086
12gb|AF139468.2|AF139468 Vigna radiata photosystem I reaction cent... 46 0.086
13ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-li... 44 0.34
14emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; s... 44 0.34
15emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 44 0.34
16dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.34
17dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.34
18gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 1.3
19gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 42 1.3
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
21dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
22gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.3
23gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
24emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 42 1.3
25ref|XM_471550.1| Oryza sativa (japonica cultivar-group), predic... 40 5.3
26ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothet... 40 5.3
27gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's H... 40 5.3
28gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.3
29gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 5.3
30emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.3
31gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.3
32emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chr... 40 5.3
33emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.3
34emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 40 5.3
35emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 40 5.3
36emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 5.3
37emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4,... 40 5.3
38gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
39gb|AE012083.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.3
40gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 geno... 40 5.3
41gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 5.3
42gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.3
43gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.3
44dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
45emb|BX814457.1|CNS0ADUS Arabidopsis thaliana Full-length cDNA Co... 40 5.3
46dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.3
47emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 5.3
48gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 5.3
49gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3 
>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA,
           complete cds
          Length = 990

 Score =  757 bits (382), Expect = 0.0
 Identities = 391/394 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   acacacgtgtgaagagagaacacaatagttatacaagattaggttcagtttcttaaatac 62
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 951 acacacatgtgaagagagaacacaatagttatacaagattgggttcagtttcttaaatac 892

                                                                       
Query: 63  aagagaggttccatttctccatgatcctatcagctcctacaccaagcccacacagatcga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 aagagaggttccatttctccatgatcctatcagctcctacaccaagcccacacagatcga 832

                                                                       
Query: 123 caccacaagccctcatcctccgctgcccatctgacttgggaccgactagccaaccacgca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 caccacaagccctcatcctccgctgcccatctgacttgggaccgactagccaaccacgca 772

                                                                       
Query: 183 cgcatggcagctagttagtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatg 242
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 cgcatggcagctacttagtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatg 712

                                                                       
Query: 243 agctcgcggtatgcggcgacgggccagatgaagcccctggggatgatcctggcggcgagc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 agctcgcggtatgcggcgacgggccagatgaagcccctggggatgatcctggcggcgagc 652

                                                                       
Query: 303 tcgacgtcgatgatgatctccctcatggcgggcttcttctcgccgctgacggcgatgagg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tcgacgtcgatgatgatctccctcatggcgggcttcttctcgccgctgacggcgatgagg 592

                                             
Query: 363 tagctgcgtccgacccagccgatccagccggcga 396
           ||||||||||||||||||||||||||||||||||
Sbjct: 591 tagctgcgtccgacccagccgatccagccggcga 558
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>ref|NM_184976.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1038

 Score =  266 bits (134), Expect = 5e-68
 Identities = 182/198 (91%)
 Strand = Plus / Minus

                                                                       
Query: 199 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 258
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 778 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 719

                                                                       
Query: 259 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 318
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 718 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 659

                                                                       
Query: 319 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 378
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 658 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 599

                             
Query: 379 agccgatccagccggcga 396
           ||||||||||||||||||
Sbjct: 598 agccgatccagccggcga 581



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 51  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 105
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 921 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 867
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  266 bits (134), Expect = 5e-68
 Identities = 182/198 (91%)
 Strand = Plus / Plus

                                                                            
Query: 199      agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 258
                ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 31969474 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 31969533

                                                                            
Query: 259      cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 318
                |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 31969534 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 31969593

                                                                            
Query: 319      tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 378
                ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 31969594 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 31969653

                                  
Query: 379      agccgatccagccggcga 396
                ||||||||||||||||||
Sbjct: 31969654 agccgatccagccggcga 31969671



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 51       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 105
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 31969219 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 31969273
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>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete
             sequence
          Length = 144306

 Score =  266 bits (134), Expect = 5e-68
 Identities = 182/198 (91%)
 Strand = Plus / Plus

                                                                         
Query: 199   agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 258
             ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 61426 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 61485

                                                                         
Query: 259   cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 318
             |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 61486 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 61545

                                                                         
Query: 319   tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 378
             ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 61546 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 61605

                               
Query: 379   agccgatccagccggcga 396
             ||||||||||||||||||
Sbjct: 61606 agccgatccagccggcga 61623



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                    
Query: 51    tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 105
             |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 61171 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 61225
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  266 bits (134), Expect = 5e-68
 Identities = 182/198 (91%)
 Strand = Plus / Plus

                                                                            
Query: 199      agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 258
                ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 32059986 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 32060045

                                                                            
Query: 259      cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 318
                |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 32060046 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 32060105

                                                                            
Query: 319      tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 378
                ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 32060106 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 32060165

                                  
Query: 379      agccgatccagccggcga 396
                ||||||||||||||||||
Sbjct: 32060166 agccgatccagccggcga 32060183



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 51       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 105
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 32059731 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 32059785
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>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full
           insert sequence
          Length = 967

 Score =  266 bits (134), Expect = 5e-68
 Identities = 182/198 (91%)
 Strand = Plus / Minus

                                                                       
Query: 199 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 258
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 742 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 683

                                                                       
Query: 259 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 318
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 682 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 623

                                                                       
Query: 319 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 378
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 622 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 563

                             
Query: 379 agccgatccagccggcga 396
           ||||||||||||||||||
Sbjct: 562 agccgatccagccggcga 545



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 51  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 105
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 890 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 836
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>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full
           insert sequence
          Length = 997

 Score =  266 bits (134), Expect = 5e-68
 Identities = 182/198 (91%)
 Strand = Plus / Minus

                                                                       
Query: 199 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 258
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 777 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 718

                                                                       
Query: 259 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 318
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 717 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 658

                                                                       
Query: 319 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 378
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 657 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 598

                             
Query: 379 agccgatccagccggcga 396
           ||||||||||||||||||
Sbjct: 597 agccgatccagccggcga 580



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 51  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 105
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 920 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 866
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>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full
           insert sequence
          Length = 990

 Score =  266 bits (134), Expect = 5e-68
 Identities = 182/198 (91%)
 Strand = Plus / Minus

                                                                       
Query: 199 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 258
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 765 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 706

                                                                       
Query: 259 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 318
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 705 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 646

                                                                       
Query: 319 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 378
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 645 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 586

                             
Query: 379 agccgatccagccggcga 396
           ||||||||||||||||||
Sbjct: 585 agccgatccagccggcga 568



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 51  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 105
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 913 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 859
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>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA,
           complete cds
          Length = 996

 Score =  266 bits (134), Expect = 5e-68
 Identities = 182/198 (91%)
 Strand = Plus / Minus

                                                                       
Query: 199 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 258
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 758 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 699

                                                                       
Query: 259 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 318
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 698 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 639

                                                                       
Query: 319 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 378
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 638 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 579

                             
Query: 379 agccgatccagccggcga 396
           ||||||||||||||||||
Sbjct: 578 agccgatccagccggcga 561



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 51  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 105
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 901 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 847
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>gb|AY103687.1| Zea mays PCO106710 mRNA sequence
          Length = 1242

 Score =  254 bits (128), Expect = 2e-64
 Identities = 189/208 (90%), Gaps = 1/208 (0%)
 Strand = Plus / Minus

                                                                       
Query: 189 gcagctagttagtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcg 248
           ||||||||| |||||||||||||   |||||||||||||||||| |||||||||||||||
Sbjct: 802 gcagctagt-agtagccgatgtccttgtcgtcgacgacgaggtctccgttgatgagctcg 744

                                                                       
Query: 249 cggtatgcggcgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacg 308
           ||||| || ||||||||||||||||| |||||||||| ||  | || |||||||||||||
Sbjct: 743 cggtaggccgcgacgggccagatgaaccccctggggaggaggcgggtggcgagctcgacg 684

                                                                       
Query: 309 tcgatgatgatctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctg 368
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 683 tcgatgatgatctccctcatggcgggcttcttctcgccgctgatggcgatgaggtagctc 624

                                       
Query: 369 cgtccgacccagccgatccagccggcga 396
           |  |||||||| |||||||| |||||||
Sbjct: 623 ctgccgacccacccgatccacccggcga 596
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>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 41    ttaggttcagtttcttaaataca 63
             |||||||||||||||||||||||
Sbjct: 17434 ttaggttcagtttcttaaataca 17456
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>gb|AF139468.2|AF139468 Vigna radiata photosystem I reaction center subunit III (CipPsaF)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 885

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 74/91 (81%)
 Strand = Plus / Minus

                                                                       
Query: 306 acgtcgatgatgatctccctcatggcgggcttcttctcgccgctgacggcgatgaggtag 365
           |||||||||||||||||| |||| |  || || |||||  | |||| ||| || ||||||
Sbjct: 651 acgtcgatgatgatctccttcatcgtcggttttttctcatccctgatggcaataaggtag 592

                                          
Query: 366 ctgcgtccgacccagccgatccagccggcga 396
           || || || ||||| |||||||| |||||||
Sbjct: 591 ctccgacccacccacccgatccacccggcga 561
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>ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-like protein
           (OSJNBb0015I11.17), mRNA
          Length = 1110

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 204 ccgatgtcggcgtcgtcgacgacgaggtcgccgt 237
           ||||||||||||||| ||||||| ||| ||||||
Sbjct: 386 ccgatgtcggcgtcggcgacgacaaggccgccgt 353
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>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2
          Length = 178073

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 203   gccgatgtcggcgtcgtcgacgacgaggtcgccg 236
             ||||||||| ||| ||||||||||||| ||||||
Sbjct: 38032 gccgatgtccgcgccgtcgacgacgagctcgccg 38065
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>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 203    gccgatgtcggcgtcgtcgacgacgaggtcgccg 236
              ||||||||| ||| ||||||||||||| ||||||
Sbjct: 127590 gccgatgtccgcgccgtcgacgacgagctcgccg 127557
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 209     gtcggcgtcgtcgacgacgagg 230
               ||||||||||||||||||||||
Sbjct: 1139192 gtcggcgtcgtcgacgacgagg 1139213
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>dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F10, full
           insert sequence
          Length = 1488

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 204 ccgatgtcggcgtcgtcgacgacgaggtcgccgt 237
           ||||||||||||||| ||||||| ||| ||||||
Sbjct: 62  ccgatgtcggcgtcggcgacgacaaggccgccgt 29
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 211     cggcgtcgtcgacgacgaggt 231
               |||||||||||||||||||||
Sbjct: 1949449 cggcgtcgtcgacgacgaggt 1949429
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>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
              sequence
          Length = 138824

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 205    cgatgtcggcgtcgtcgacgacgaggtcgccgt 237
              |||||||||||||| ||||||| ||| ||||||
Sbjct: 107077 cgatgtcggcgtcggcgacgacaaggccgccgt 107045
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 203      gccgatgtcggcgtcgtcgacgacg 227
                |||||||||| ||||||||||||||
Sbjct: 18403096 gccgatgtcgtcgtcgtcgacgacg 18403072



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 211      cggcgtcgtcgacgacgagg 230
                ||||||||||||||||||||
Sbjct: 12249186 cggcgtcgtcgacgacgagg 12249167
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 205      cgatgtcggcgtcgtcgacgacgaggtcgccgt 237
                |||||||||||||| ||||||| ||| ||||||
Sbjct: 20705625 cgatgtcggcgtcggcgacgacaaggccgccgt 20705593



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 210      tcggcgtcgtcgacgacgag 229
                ||||||||||||||||||||
Sbjct: 21068348 tcggcgtcgtcgacgacgag 21068367
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 218     gtcgacgacgaggtcgccgttgatg 242
               |||||||||||||||||||| ||||
Sbjct: 1766710 gtcgacgacgaggtcgccgtcgatg 1766734
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 205      cgatgtcggcgtcgtcgacgacgaggtcgccgt 237
                |||||||||||||| ||||||| ||| ||||||
Sbjct: 20716897 cgatgtcggcgtcggcgacgacaaggccgccgt 20716865



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 210      tcggcgtcgtcgacgacgag 229
                ||||||||||||||||||||
Sbjct: 21079612 tcggcgtcgtcgacgacgag 21079631
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>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
              complete sequence
          Length = 133413

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 203    gccgatgtcggcgtcgtcgacgacg 227
              |||||||||| ||||||||||||||
Sbjct: 105019 gccgatgtcgtcgtcgtcgacgacg 104995
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>ref|XM_471550.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 211 cggcgtcgtcgacgacgagg 230
           ||||||||||||||||||||
Sbjct: 214 cggcgtcgtcgacgacgagg 195
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>ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0015J15.29), mRNA
          Length = 1440

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 tcggcgtcgtcgacgacgag 229
           ||||||||||||||||||||
Sbjct: 85  tcggcgtcgtcgacgacgag 66
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>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 230137

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    tcttaaatacaagagaggtt 72
             ||||||||||||||||||||
Sbjct: 82654 tcttaaatacaagagaggtt 82673
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 335     cttcttctcgccgctgacgg 354
               ||||||||||||||||||||
Sbjct: 3593435 cttcttctcgccgctgacgg 3593454
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 341     ctcgccgctgacggcgatga 360
               ||||||||||||||||||||
Sbjct: 1323852 ctcgccgctgacggcgatga 1323871
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 372     ccgacccagccgatccagccggcg 395
               |||| |||||||||||||||||||
Sbjct: 5065965 ccgaaccagccgatccagccggcg 5065988
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 208     tgtcggcgtcgtcgacgacg 227
               ||||||||||||||||||||
Sbjct: 1625246 tgtcggcgtcgtcgacgacg 1625227
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>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete
              sequence
          Length = 173580

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 75     atttctccatgatcctatcagctcctac 102
              ||||||||||||||| |||| |||||||
Sbjct: 156375 atttctccatgatccaatcacctcctac 156348
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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 337    tcttctcgccgctgacggcgatga 360
              |||||||||||||||||| |||||
Sbjct: 190124 tcttctcgccgctgacggtgatga 190147
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>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 337    tcttctcgccgctgacggcgatga 360
              |||||||||||||||||| |||||
Sbjct: 103960 tcttctcgccgctgacggtgatga 103983
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>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 337    tcttctcgccgctgacggcgatga 360
              |||||||||||||||||| |||||
Sbjct: 179689 tcttctcgccgctgacggtgatga 179712
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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    cggcgtcgtcgacgacgagg 230
              ||||||||||||||||||||
Sbjct: 228093 cggcgtcgtcgacgacgagg 228112
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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
             complete sequence
          Length = 185211

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   cggcgtcgtcgacgacgagg 230
             ||||||||||||||||||||
Sbjct: 74067 cggcgtcgtcgacgacgagg 74048
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>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
              complete sequence
          Length = 145070

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 209    gtcggcgtcgtcgacgacgaggtcgccg 236
              |||| ||||||||||||||| |||||||
Sbjct: 102007 gtcgtcgtcgtcgacgacgacgtcgccg 102034
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>gb|AE012083.1| Xanthomonas axonopodis pv. citri str. 306,  section 461 of 469 of the
            complete genome
          Length = 10370

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 372  ccgacccagccgatccagccggcg 395
            |||| |||||||||||||||||||
Sbjct: 1205 ccgaaccagccgatccagccggcg 1228
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>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete
              sequence
          Length = 144798

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    tcggcgtcgtcgacgacgag 229
              ||||||||||||||||||||
Sbjct: 137358 tcggcgtcgtcgacgacgag 137339
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 292     tggcggcgagctcgacgtcg 311
               ||||||||||||||||||||
Sbjct: 1823593 tggcggcgagctcgacgtcg 1823612
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 209     gtcggcgtcgtcgacgacga 228
               ||||||||||||||||||||
Sbjct: 3776403 gtcggcgtcgtcgacgacga 3776422
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    ccagccgatccagccggcga 396
              ||||||||||||||||||||
Sbjct: 655758 ccagccgatccagccggcga 655777
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 209     gtcggcgtcgtcgacgacgaggtcgccg 236
               |||| ||||||||||||||| |||||||
Sbjct: 4734002 gtcgtcgtcgtcgacgacgacgtcgccg 4734029
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>emb|BX814457.1|CNS0ADUS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB75ZA08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 411

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 65/80 (81%)
 Strand = Plus / Minus

                                                                       
Query: 309 tcgatgatgatctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctg 368
           ||||||||||||||  |||| ||||| |||||||| || || |  || |||| |||||| 
Sbjct: 212 tcgatgatgatctctttcatcgcgggtttcttctcaccactaatagctatgaagtagctt 153

                               
Query: 369 cgtccgacccagccgatcca 388
           | ||| ||||| ||||||||
Sbjct: 152 cttccaacccacccgatcca 133
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 376     cccagccgatccagccggcg 395
               ||||||||||||||||||||
Sbjct: 3034808 cccagccgatccagccggcg 3034827
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 223     cgacgaggtcgccgttgatgagct 246
               ||||||||||| ||||||||||||
Sbjct: 1147951 cgacgaggtcgtcgttgatgagct 1147974
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     gagaggttccatttctccat 84
              ||||||||||||||||||||
Sbjct: 418732 gagaggttccatttctccat 418713
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
            complete sequence
          Length = 187956

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 209  gtcggcgtcgtcgacgacgaggtcgccg 236
            |||| ||||||||||||||| |||||||
Sbjct: 6410 gtcgtcgtcgtcgacgacgacgtcgccg 6437


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,775,157
Number of Sequences: 3902068
Number of extensions: 2775157
Number of successful extensions: 60451
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 59033
Number of HSP's gapped (non-prelim): 1419
length of query: 396
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 374
effective length of database: 17,147,199,772
effective search space: 6413052714728
effective search space used: 6413052714728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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