>NFIC_MOUSE (P70255) Nuclear factor 1 C-type (Nuclear factor 1/C) (NF1-C)|
           (NFI-C) (NF-I/C) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 439

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 231 SVQDAPRINRSTELSRG*ALLLEGHDRLEGPYQGLH-PALPLLQELAFGLLDHVVVLEII 407
           S QD+PR++  T+  R    +  G  R   P   LH PA P+L + A     H     I 
Sbjct: 339 SPQDSPRLSSFTQHHRPVIAVHSGIARSPHPTSALHFPATPILPQTASTYFPHTA---IR 395

Query: 408 LPPRLSSFTPV 440
            PP L+   P+
Sbjct: 396 YPPHLNPQDPL 406

>IF2_PSEPK (Q88DV7) Translation initiation factor IF-2|
          Length = 846

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 81  RTSNSNKQRINNGRGDQSEIKKKSTHGIQMDQG 179
           RT++        GRG +S++KK++ HG Q   G
Sbjct: 229 RTTDEESDGARRGRGGKSKLKKRNQHGFQNPTG 261

>EZRA_BACHD (Q9K802) Septation ring formation regulator ezrA|
          Length = 561

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -3

Query: 431 EAAQSWRKDDLKNNDVIEETKSKLLEERK 345
           E+  S RKD+LK  + +++ K KLLE+++
Sbjct: 403 ESLNSLRKDELKAKEELKQLKEKLLEDKR 431

>CADHO_XENLA (P33147) Neural-cadherin 2 precursor (N-cadherin 2)|
          Length = 906

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
 Frame = +3

Query: 84  TSNSNKQRINNGRGD--------QSEIKKKSTHGIQMD--QGNPSYNHSNTRGTMIAAYS 233
           +S+ N   INN  GD          E  ++ T  IQ    +GNP+Y  SNT   +IA   
Sbjct: 316 SSSPNMFTINNETGDIITLAAGLDREKVQRYTLIIQATDMEGNPTYGLSNTATAVIAVTD 375

Query: 234 VQDAP 248
           V D P
Sbjct: 376 VNDNP 380

>FLGE_HELMU (P50611) Flagellar hook protein flgE (Fragment)|
          Length = 454

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 449 LASNRGEAAQSWRKDDLKNNDVIEE 375
           L +N G   Q W KDDL+N + I E
Sbjct: 129 LVTNGGYVVQGWMKDDLRNAEKISE 153

>CADHN_XENLA (P20310) Neural-cadherin 1 precursor (N-cadherin 1)|
          Length = 905

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
 Frame = +3

Query: 87  SNSNKQRINNGRGD--------QSEIKKKSTHGIQMD--QGNPSYNHSNTRGTMIAAYSV 236
           S+ N   INN  GD          E  ++ T  IQ    +GNP+Y  SNT   +IA   V
Sbjct: 317 SSPNMFTINNETGDIITLAAGLDREKVQRYTLIIQATDMEGNPTYGLSNTATAVIAVTDV 376

Query: 237 QDAP 248
            D P
Sbjct: 377 NDNP 380

>AB1IP_BRARE (Q6PFT9) Amyloid beta A4 precursor protein-binding family B member|
           1-interacting protein (APBB1-interacting protein 1)
          Length = 646

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 416 WRKDDLKNNDVIEETKSKLLEERKGRVKALVGAFETVMSFKE 291
           W+KD     D+ E+ K +LLEE       +V   E V+  KE
Sbjct: 262 WKKDKKSLKDMKEKDKEQLLEENFCGASVIVPDLEGVLYLKE 303


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,927,009
Number of Sequences: 219361
Number of extensions: 924101
Number of successful extensions: 2591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2585
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)