Clone Information

BLAST Search Result

Clone Name	rbaet113e03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AL662995.2\|OSJN00202 Oryza sativa genomic DNA, chromosome 4,...	137	4e-29
2	emb\|AL662955.3\|OSJN00158 Oryza sativa genomic DNA, chromosome 4,...	137	4e-29
3	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	137	4e-29
4	dbj\|AK072677.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	137	4e-29
5	gb\|AY110793.1\| Zea mays CL9336_1 mRNA sequence	96	1e-16
6	ref\|XM_471560.1\| Oryza sativa (japonica cultivar-group), predic...	80	7e-12
7	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	70	7e-09
8	dbj\|AP003771.2\| Oryza sativa (japonica cultivar-group) genomic D...	70	7e-09
9	dbj\|AK100512.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	70	7e-09
10	gb\|AC122439.4\| Mus musculus BAC clone RP24-222B4 from chromosome...	44	0.40
11	gb\|AC154875.8\| Mus musculus chromosome 3, clone RP23-14O16, comp...	44	0.40
12	gb\|AC161454.3\| Mus musculus BAC clone RP23-332F10 from chromosom...	44	0.40
13	gb\|AC158233.2\| Mus musculus BAC clone RP23-240E15 from chromosom...	44	0.40
14	gb\|AY623113.1\| Homo sapiens origin recognition complex, subunit ...	42	1.6
15	gb\|BC104454.1\| Homo sapiens cDNA clone IMAGE:40030264	42	1.6
16	ref\|XM_756528.1\| Ustilago maydis 521 hypothetical protein (UM054...	42	1.6
17	gb\|AC146202.3\| Pan troglodytes BAC clone RP43-35A11 from 7, comp...	42	1.6
18	emb\|AL451126.18\| Human DNA sequence from clone RP11-106G15 on ch...	42	1.6
19	dbj\|AK057562.1\| Homo sapiens cDNA FLJ33000 fis, clone THYMU1000191	42	1.6
20	gb\|AC099753.2\| Homo sapiens chromosome 3 clone RP11-466A13, comp...	42	1.6
21	dbj\|AB010072.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	42	1.6
22	gb\|AE000657.1\| Aquifex aeolicus VF5, complete genome	42	1.6
23	gb\|AC114494.2\| Homo sapiens chromosome 1 clone RP11-439L8, compl...	42	1.6
24	gb\|AC165963.4\| Mus musculus BAC clone RP23-338N22 from chromosom...	40	6.3
25	gb\|DP000014.1\| Callithrix jacchus target 1 genomic scaffold	40	6.3
26	gb\|AC157560.3\| Mus musculus chromosome 15, clone RP24-270I3, com...	40	6.3
27	gb\|AE017346.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	6.3
28	gb\|AC149789.1\| Pan troglodytes BAC clone CH251-56H2 from Y, comp...	40	6.3
29	gb\|AC146197.3\| Pan troglodytes BAC clone CH251-450H3 from Y, com...	40	6.3
30	gb\|AY355500.1\| Canis familiaris isolate cOR10K3 olfactory recept...	40	6.3
31	gb\|AC132246.2\| Mus musculus BAC clone RP24-421K16 from chromosom...	40	6.3
32	ref\|XM_545729.2\| PREDICTED: Canis familiaris similar to Olfactor...	40	6.3
33	gb\|BT011420.1\| Drosophila melanogaster AT07459 full insert cDNA	40	6.3
34	gb\|AC134534.3\| Mus musculus BAC clone RP24-562E3 from chromosome...	40	6.3
35	ref\|XM_571479.1\| Cryptococcus neoformans var. neoformans JEC21 h...	40	6.3
36	gb\|AC129194.3\| Mus musculus BAC clone RP24-147H7 from chromosome...	40	6.3
37	gb\|AC127423.4\| Mus musculus BAC clone RP24-487D5 from chromosome...	40	6.3
38	gb\|AC101882.14\| Mus musculus chromosome 10, clone RP23-394M6, co...	40	6.3
39	gb\|AC146290.1\| Pan troglodytes BAC clone CH251-549P23 from Y, co...	40	6.3
40	gb\|AC146674.3\| Callithrix jacchus clone CH259-338M13, complete s...	40	6.3
41	emb\|CR847868.9\| Zebrafish DNA sequence from clone DKEYP-99G4 in ...	40	6.3
42	emb\|AL607131.15\| Mouse DNA sequence from clone RP23-372H19 on ch...	40	6.3
43	dbj\|BS000590.1\| Pan troglodytes chromosome Y clone:PTB-194A24, c...	40	6.3
44	dbj\|BA000038.2\| Vibrio vulnificus YJ016 DNA, chromosome II, comp...	40	6.3
45	gb\|DP000054.1\| Pan troglodytes chromosome Y, partial sequence	40	6.3
46	gb\|AY118680.1\| Drosophila melanogaster AT10348 full insert cDNA	40	6.3
47	dbj\|AK000897.1\| Homo sapiens cDNA FLJ10035 fis, clone HEMBA1000919	40	6.3
48	gb\|CP000133.1\| Rhizobium etli CFN 42, complete genome	40	6.3
49	ref\|NM_169941.1\| Drosophila melanogaster Na/Ca-exchange protein ...	40	6.3
50	ref\|NM_169940.1\| Drosophila melanogaster Na/Ca-exchange protein ...	40	6.3
51	ref\|NM_079699.2\| Drosophila melanogaster Na/Ca-exchange protein ...	40	6.3
52	gb\|AC160402.8\| Mus musculus 10 BAC RP23-115L17 (Roswell Park Can...	40	6.3
53	ref\|XM_624313.1\| PREDICTED: Apis mellifera similar to GA19045-PA...	40	6.3
54	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
55	dbj\|AB210446.1\| Ciona intestinalis mRNA for transcription factor...	40	6.3
56	gb\|AC110771.3\| Homo sapiens BAC clone RP11-173M11 from 4, comple...	40	6.3
57	gb\|AC009348.6\|AC009348 Drosophila melanogaster, chromosome 3R, r...	40	6.3
58	gb\|AC013726.7\| Homo sapiens BAC clone RP11-400N9 from 2, complet...	40	6.3
59	gb\|AC010726.4\|AC010726 Homo sapiens BAC clone RP11-224C16 from Y...	40	6.3
60	gb\|AC092925.8\| Homo sapiens 3 BAC RP11-78O22 (Roswell Park Cance...	40	6.3
61	gb\|AC117497.3\| Homo sapiens 12 BAC RP11-422O21 (Roswell Park Can...	40	6.3
62	gb\|AC124804.10\| Homo sapiens chromosome 17, clone RP11-449L23, c...	40	6.3
63	gb\|AC133647.3\| Mus musculus BAC clone RP23-287D22 from chromosom...	40	6.3
64	gb\|M74895.1\|SMFPOLORF Simian foamy virus type 3, gag polyprotein...	40	6.3
65	dbj\|AP004255.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
66	dbj\|AP005412.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
67	dbj\|AP004178.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
68	emb\|AL772341.12\| Mouse DNA sequence from clone RP23-179N22 on ch...	40	6.3
69	gb\|AC114558.18\| Mus musculus chromosome 8, clone RP23-47G19, com...	40	6.3
70	emb\|AM055942.1\| Toxoplasma gondii, strain RH, genomic DNA chromo...	40	6.3
71	gb\|AC150271.4\| Mus musculus BAC clone RP23-289F8 from 7, complet...	40	6.3
72	gb\|AE003733.3\| Drosophila melanogaster chromosome 3R, section 71...	40	6.3
73	gb\|AC153821.6\| Mus musculus 10 BAC RP23-193A14 (Roswell Park Can...	40	6.3
74	gb\|AE016796.1\| Vibrio vulnificus CMCP6 chromosome II, complete s...	40	6.3
75	gb\|AC149869.2\| Mus musculus BAC clone RP23-3E12 from 7, complete...	40	6.3
76	gb\|AC123862.5\| Mus musculus BAC clone RP23-356A24 from 16, compl...	40	6.3
77	gb\|AF009897.1\|AF009897 Drosophila melanogaster 3Na(+)-1Ca(2+) ex...	40	6.3
78	emb\|AL117209.7\|CNS01DRH Human chromosome 14 DNA sequence BAC R-3...	40	6.3
79	gb\|L13448.1\|MUSGSTM101 Mouse glutathione transferase mu (GSTM1) ...	40	6.3
80	gb\|AC104451.2\| Homo sapiens chromosome 3 clone RP11-632N2, compl...	40	6.3
81	emb\|AL671877.15\| Mouse DNA sequence from clone RP23-214E3 on chr...	40	6.3

>emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032D24,
            complete sequence
          Length = 132465

 Score =  137 bits (69), Expect = 4e-29
 Identities = 108/121 (89%)
 Strand = Plus / Plus

                                                                        
Query: 278  aggctgagcactactccttgaaggacatgaccgtctcgaaggcccctaccaaggccttca 337
            ||||||||||||| ||||||||||||||||| |||||||| || |||||||  |||||||
Sbjct: 5381 aggctgagcactattccttgaaggacatgacggtctcgaacgcgcctaccagagccttca 5440

                                                                        
Query: 338  ccctgcccttcctctcctccaggagcttgcttttggtctcctcgatcacgtcgttgttct 397
            |||||| |||||||||||| ||||| ||||||||||| ||||| ||||| |||||| |||
Sbjct: 5441 ccctgctcttcctctcctcaaggagtttgcttttggtttcctcaatcacatcgttgctct 5500

             
Query: 398  t 398
            |
Sbjct: 5501 t 5501

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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
              complete sequence
          Length = 185211

 Score =  137 bits (69), Expect = 4e-29
 Identities = 108/121 (89%)
 Strand = Plus / Plus

                                                                          
Query: 278    aggctgagcactactccttgaaggacatgaccgtctcgaaggcccctaccaaggccttca 337
              ||||||||||||| ||||||||||||||||| |||||||| || |||||||  |||||||
Sbjct: 156239 aggctgagcactattccttgaaggacatgacggtctcgaacgcgcctaccagagccttca 156298

                                                                          
Query: 338    ccctgcccttcctctcctccaggagcttgcttttggtctcctcgatcacgtcgttgttct 397
              |||||| |||||||||||| ||||| ||||||||||| ||||| ||||| |||||| |||
Sbjct: 156299 ccctgctcttcctctcctcaaggagtttgcttttggtttcctcaatcacatcgttgctct 156358

               
Query: 398    t 398
              |
Sbjct: 156359 t 156359

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  137 bits (69), Expect = 4e-29
 Identities = 108/121 (89%)
 Strand = Plus / Plus

                                                                            
Query: 278      aggctgagcactactccttgaaggacatgaccgtctcgaaggcccctaccaaggccttca 337
                ||||||||||||| ||||||||||||||||| |||||||| || |||||||  |||||||
Sbjct: 12331355 aggctgagcactattccttgaaggacatgacggtctcgaacgcgcctaccagagccttca 12331414

                                                                            
Query: 338      ccctgcccttcctctcctccaggagcttgcttttggtctcctcgatcacgtcgttgttct 397
                |||||| |||||||||||| ||||| ||||||||||| ||||| ||||| |||||| |||
Sbjct: 12331415 ccctgctcttcctctcctcaaggagtttgcttttggtttcctcaatcacatcgttgctct 12331474

                 
Query: 398      t 398
                |
Sbjct: 12331475 t 12331475

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>dbj|AK072677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136A15, full
            insert sequence
          Length = 1549

 Score =  137 bits (69), Expect = 4e-29
 Identities = 108/121 (89%)
 Strand = Plus / Minus

                                                                        
Query: 278  aggctgagcactactccttgaaggacatgaccgtctcgaaggcccctaccaaggccttca 337
            ||||||||||||| ||||||||||||||||| |||||||| || |||||||  |||||||
Sbjct: 1325 aggctgagcactattccttgaaggacatgacggtctcgaacgcgcctaccagagccttca 1266

                                                                        
Query: 338  ccctgcccttcctctcctccaggagcttgcttttggtctcctcgatcacgtcgttgttct 397
            |||||| |||||||||||| ||||| ||||||||||| ||||| ||||| |||||| |||
Sbjct: 1265 ccctgctcttcctctcctcaaggagtttgcttttggtttcctcaatcacatcgttgctct 1206

             
Query: 398  t 398
            |
Sbjct: 1205 t 1205

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>gb|AY110793.1| Zea mays CL9336_1 mRNA sequence
          Length = 1098

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                       
Query: 325 accaaggccttcaccctgcccttcctctcctccaggagcttgcttttggtctcctcgatc 384
           |||||||||||||||| || ||||||||||  |||||||||||||||||| ||||| |||
Sbjct: 263 accaaggccttcacccggctcttcctctccagcaggagcttgcttttggtttcctcaatc 322

                                           
Query: 385 acgtcgttgttcttgagatcatccttcctcca 416
           ||||| |||  |||  ||||||||||||||||
Sbjct: 323 acgtcattgccctttggatcatccttcctcca 354

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>ref|XM_471560.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2922

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 331  gccttcaccctgcccttcctctcctccaggagcttgcttttggtctcctcgatcacgtcg 390
            ||||||||||||| |||||||||||| ||||| ||||||||||| ||||| ||||| |||
Sbjct: 1379 gccttcaccctgctcttcctctcctcaaggagtttgcttttggtttcctcaatcacatcg 1320

                    
Query: 391  ttgttctt 398
            ||| ||||
Sbjct: 1319 ttgctctt 1312

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                            
Query: 303      catgaccgtctcgaaggcccctaccaaggccttcaccctgcccttcctctcctccaggag 362
                ||||||||||||||| ||||| ||||  ||||||||| ||| |||||||| |  ||  ||
Sbjct: 28687689 catgaccgtctcgaacgccccaaccagcgccttcaccttgctcttcctcttcatcatcag 28687630

                                               
Query: 363      cttgcttttggtctcctcgatcacgtcgttg 393
                | | || ||||||||||||||||||||||||
Sbjct: 28687629 cgtcctcttggtctcctcgatcacgtcgttg 28687599

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>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0622F03
          Length = 170064

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                         
Query: 303   catgaccgtctcgaaggcccctaccaaggccttcaccctgcccttcctctcctccaggag 362
             ||||||||||||||| ||||| ||||  ||||||||| ||| |||||||| |  ||  ||
Sbjct: 88255 catgaccgtctcgaacgccccaaccagcgccttcaccttgctcttcctcttcatcatcag 88196

                                            
Query: 363   cttgcttttggtctcctcgatcacgtcgttg 393
             | | || ||||||||||||||||||||||||
Sbjct: 88195 cgtcctcttggtctcctcgatcacgtcgttg 88165

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>dbj|AK100512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099O06, full
            insert sequence
          Length = 2301

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                        
Query: 303  catgaccgtctcgaaggcccctaccaaggccttcaccctgcccttcctctcctccaggag 362
            ||||||||||||||| ||||| ||||  ||||||||| ||| |||||||| |  ||  ||
Sbjct: 1886 catgaccgtctcgaacgccccaaccagcgccttcaccttgctcttcctcttcatcatcag 1827

                                           
Query: 363  cttgcttttggtctcctcgatcacgtcgttg 393
            | | || ||||||||||||||||||||||||
Sbjct: 1826 cgtcctcttggtctcctcgatcacgtcgttg 1796

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>gb|AC122439.4| Mus musculus BAC clone RP24-222B4 from chromosome 3, complete sequence
          Length = 159703

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 348   cctctcctccaggagcttgctt 369
             ||||||||||||||||||||||
Sbjct: 27876 cctctcctccaggagcttgctt 27897

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>gb|AC154875.8| Mus musculus chromosome 3, clone RP23-14O16, complete sequence
          Length = 225841

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 322    cctaccaaggccttcaccctgcccttcctc 351
              |||||||||||||||||||| |||| ||||
Sbjct: 106354 cctaccaaggccttcacccttccctccctc 106325

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>gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosome 3, complete sequence
          Length = 228486

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 348   cctctcctccaggagcttgctt 369
             ||||||||||||||||||||||
Sbjct: 43495 cctctcctccaggagcttgctt 43516

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>gb|AC158233.2| Mus musculus BAC clone RP23-240E15 from chromosome 3, complete
           sequence
          Length = 209923

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 348 cctctcctccaggagcttgctt 369
           ||||||||||||||||||||||
Sbjct: 592 cctctcctccaggagcttgctt 571

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>gb|AY623113.1| Homo sapiens origin recognition complex, subunit 3-like (yeast) (ORC3L)
             gene, complete cds
          Length = 81082

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 424   gcagcttcacccctgttgctt 444
             |||||||||||||||||||||
Sbjct: 25708 gcagcttcacccctgttgctt 25728

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>gb|BC104454.1| Homo sapiens cDNA clone IMAGE:40030264
          Length = 1105

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 340 ctgcccttcctctcctccagg 360
           |||||||||||||||||||||
Sbjct: 544 ctgcccttcctctcctccagg 524

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>ref|XM_756528.1| Ustilago maydis 521 hypothetical protein (UM05474.1) partial mRNA
          Length = 2601

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 381  gatcacgtcgttgttcttgag 401
            |||||||||||||||||||||
Sbjct: 1551 gatcacgtcgttgttcttgag 1531

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>gb|AC146202.3| Pan troglodytes BAC clone RP43-35A11 from 7, complete sequence
          Length = 161532

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 281   ctgagcactactccttgaagg 301
             |||||||||||||||||||||
Sbjct: 82751 ctgagcactactccttgaagg 82771

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>emb|AL451126.18| Human DNA sequence from clone RP11-106G15 on chromosome 6 Contains the
             5' end of a gene for a novel protein similar to
             arginyl-tRNA synthetase (arginine-tRNA ligase, EC
             6.1.1.19) and the 5' end of the ORC3L gene for origin
             recognition complex, subunit 3-like (yeast), complete
             sequence
          Length = 106700

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 424   gcagcttcacccctgttgctt 444
             |||||||||||||||||||||
Sbjct: 71158 gcagcttcacccctgttgctt 71178

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>dbj|AK057562.1| Homo sapiens cDNA FLJ33000 fis, clone THYMU1000191
          Length = 2270

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 340  ctgcccttcctctcctccagg 360
            |||||||||||||||||||||
Sbjct: 1363 ctgcccttcctctcctccagg 1343

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>gb|AC099753.2| Homo sapiens chromosome 3 clone RP11-466A13, complete sequence
          Length = 171696

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 137    aataaagaaaaaatcaacacatgga 161
              |||||||||||||| ||||||||||
Sbjct: 115322 aataaagaaaaaataaacacatgga 115298

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>dbj|AB010072.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6
          Length = 83698

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   agtccgaaataaagaaaaaat 150
             |||||||||||||||||||||
Sbjct: 56808 agtccgaaataaagaaaaaat 56828

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>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 345     cttcctctcctccaggagctt 365
               |||||||||||||||||||||
Sbjct: 1120090 cttcctctcctccaggagctt 1120070

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>gb|AC114494.2| Homo sapiens chromosome 1 clone RP11-439L8, complete sequence
          Length = 146301

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 340    ctgcccttcctctcctccagg 360
              |||||||||||||||||||||
Sbjct: 102497 ctgcccttcctctcctccagg 102477

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>gb|AC165963.4| Mus musculus BAC clone RP23-338N22 from chromosome 7, complete sequence
          Length = 218284

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ataaagaaaaaatcaacaca 157
             ||||||||||||||||||||
Sbjct: 39115 ataaagaaaaaatcaacaca 39096

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>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 421     tgagcagcttcacccctgttgctt 444
               ||||||||||||||||||| ||||
Sbjct: 1922955 tgagcagcttcacccctgtggctt 1922932

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>gb|AC157560.3| Mus musculus chromosome 15, clone RP24-270I3, complete sequence
          Length = 157844

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   taccaaggccttcaccctgc 343
             ||||||||||||||||||||
Sbjct: 97347 taccaaggccttcaccctgc 97328

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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
              sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     caacagcaacaagcagcgca 108
              ||||||||||||||||||||
Sbjct: 134747 caacagcaacaagcagcgca 134728

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>gb|AC149789.1| Pan troglodytes BAC clone CH251-56H2 from Y, complete sequence
          Length = 172440

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 136  aaataaagaaaaaatcaaca 155
            ||||||||||||||||||||
Sbjct: 9065 aaataaagaaaaaatcaaca 9046

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>gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, complete sequence
          Length = 182113

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    aaataaagaaaaaatcaaca 155
              ||||||||||||||||||||
Sbjct: 179810 aaataaagaaaaaatcaaca 179791

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>gb|AY355500.1| Canis familiaris isolate cOR10K3 olfactory receptor family 10
           subfamily K-like gene, partial sequence
          Length = 492

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cctgcccttcctctcctcca 358
           ||||||||||||||||||||
Sbjct: 48  cctgcccttcctctcctcca 67

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>gb|AC132246.2| Mus musculus BAC clone RP24-421K16 from chromosome 7, complete sequence
          Length = 155682

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    ataaagaaaaaatcaacaca 157
              ||||||||||||||||||||
Sbjct: 148640 ataaagaaaaaatcaacaca 148621

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>ref|XM_545729.2| PREDICTED: Canis familiaris similar to Olfactory receptor 10K1
           (LOC488612), mRNA
          Length = 942

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cctgcccttcctctcctcca 358
           ||||||||||||||||||||
Sbjct: 495 cctgcccttcctctcctcca 514

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>gb|BT011420.1| Drosophila melanogaster AT07459 full insert cDNA
          Length = 3747

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  cagcaacagcaacaagcagc 105
           ||||||||||||||||||||
Sbjct: 457 cagcaacagcaacaagcagc 476

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>gb|AC134534.3| Mus musculus BAC clone RP24-562E3 from chromosome 7, complete sequence
          Length = 185268

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    ataaagaaaaaatcaacaca 157
              ||||||||||||||||||||
Sbjct: 182682 ataaagaaaaaatcaacaca 182701

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>ref|XM_571479.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNF00370) partial mRNA
          Length = 2912

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   caacagcaacaagcagcgca 108
            ||||||||||||||||||||
Sbjct: 1166 caacagcaacaagcagcgca 1185

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>gb|AC129194.3| Mus musculus BAC clone RP24-147H7 from chromosome 7, complete sequence
          Length = 124950

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    ataaagaaaaaatcaacaca 157
              ||||||||||||||||||||
Sbjct: 118394 ataaagaaaaaatcaacaca 118413

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>gb|AC127423.4| Mus musculus BAC clone RP24-487D5 from chromosome 7, complete sequence
          Length = 160293

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ataaagaaaaaatcaacaca 157
             ||||||||||||||||||||
Sbjct: 55102 ataaagaaaaaatcaacaca 55121

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>gb|AC101882.14| Mus musculus chromosome 10, clone RP23-394M6, complete sequence
          Length = 209838

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    ccctgcccttcctctcctcc 357
              ||||||||||||||||||||
Sbjct: 184150 ccctgcccttcctctcctcc 184169

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>gb|AC146290.1| Pan troglodytes BAC clone CH251-549P23 from Y, complete sequence
          Length = 176345

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    aaataaagaaaaaatcaaca 155
              ||||||||||||||||||||
Sbjct: 109504 aaataaagaaaaaatcaaca 109485

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>gb|AC146674.3| Callithrix jacchus clone CH259-338M13, complete sequence
          Length = 228448

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 421    tgagcagcttcacccctgttgctt 444
              ||||||||||||||||||| ||||
Sbjct: 199000 tgagcagcttcacccctgtggctt 198977

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>emb|CR847868.9| Zebrafish DNA sequence from clone DKEYP-99G4 in linkage group 8, complete
              sequence
          Length = 147399

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    aatcaacacatggaatacaa 167
              ||||||||||||||||||||
Sbjct: 123031 aatcaacacatggaatacaa 123012

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>emb|AL607131.15| Mouse DNA sequence from clone RP23-372H19 on chromosome 13 Contains the
             Agtr1a gene for angiotensin receptor 1a, a novel
             pseudogene and a CpG island, complete sequence
          Length = 172871

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   accctgcccttcctctcctc 356
             ||||||||||||||||||||
Sbjct: 50041 accctgcccttcctctcctc 50022

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>dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, complete sequence
          Length = 219969

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    aaataaagaaaaaatcaaca 155
              ||||||||||||||||||||
Sbjct: 128922 aaataaagaaaaaatcaaca 128903

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>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence
          Length = 1857073

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    tggtctcctcgatcacgtcg 390
              ||||||||||||||||||||
Sbjct: 383987 tggtctcctcgatcacgtcg 384006

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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 136      aaataaagaaaaaatcaaca 155
                ||||||||||||||||||||
Sbjct: 20830078 aaataaagaaaaaatcaaca 20830097

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>gb|AY118680.1| Drosophila melanogaster AT10348 full insert cDNA
          Length = 3743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  cagcaacagcaacaagcagc 105
           ||||||||||||||||||||
Sbjct: 460 cagcaacagcaacaagcagc 479

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>dbj|AK000897.1| Homo sapiens cDNA FLJ10035 fis, clone HEMBA1000919
          Length = 1775

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 334  ttcaccctgcccttcctctcctcc 357
            ||||||||||||||||| ||||||
Sbjct: 1186 ttcaccctgcccttcctttcctcc 1209

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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 440    tgcttgccagcgccgatgccttcg 463
              |||||||| |||||||||||||||
Sbjct: 677502 tgcttgcccgcgccgatgccttcg 677525

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>ref|NM_169941.1| Drosophila melanogaster Na/Ca-exchange protein CG5685-RC,
           transcript variant C (Calx), mRNA
          Length = 4726

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  cagcaacagcaacaagcagc 105
           ||||||||||||||||||||
Sbjct: 354 cagcaacagcaacaagcagc 373

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>ref|NM_169940.1| Drosophila melanogaster Na/Ca-exchange protein CG5685-RB,
           transcript variant B (Calx), mRNA
          Length = 4829

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  cagcaacagcaacaagcagc 105
           ||||||||||||||||||||
Sbjct: 457 cagcaacagcaacaagcagc 476

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>ref|NM_079699.2| Drosophila melanogaster Na/Ca-exchange protein CG5685-RA, transcript
            variant A (Calx), mRNA
          Length = 5390

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 86   cagcaacagcaacaagcagc 105
            ||||||||||||||||||||
Sbjct: 1018 cagcaacagcaacaagcagc 1037

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>gb|AC160402.8| Mus musculus 10 BAC RP23-115L17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224566

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    caccctgcccttcctctcct 355
              ||||||||||||||||||||
Sbjct: 152998 caccctgcccttcctctcct 152979

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>ref|XM_624313.1| PREDICTED: Apis mellifera similar to GA19045-PA (LOC551928), mRNA
          Length = 2337

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   caacagcaacaagcagcgca 108
            ||||||||||||||||||||
Sbjct: 991  caacagcaacaagcagcgca 1010

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 232      cagtacaggatgcacccagg 251
                ||||||||||||||||||||
Sbjct: 27989889 cagtacaggatgcacccagg 27989870



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                       
Query: 354     ctccaggagcttgcttttggtctcctcgatcacgtcgttg 393
               |||||||||||||||    | |||||||||||||||||||
Sbjct: 2772495 ctccaggagcttgctccgcgcctcctcgatcacgtcgttg 2772534

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>dbj|AB210446.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: cilv047l24
          Length = 3256

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  cagcaacagcaacaagcagc 105
           ||||||||||||||||||||
Sbjct: 813 cagcaacagcaacaagcagc 832

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>gb|AC110771.3| Homo sapiens BAC clone RP11-173M11 from 4, complete sequence
          Length = 167429

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 341  tgcccttcctctcctccagg 360
            ||||||||||||||||||||
Sbjct: 5349 tgcccttcctctcctccagg 5368

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>gb|AC009348.6|AC009348 Drosophila melanogaster, chromosome 3R, region 93A-93B, BAC clone
             BACR05I01, complete sequence
          Length = 187151

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    cagcaacagcaacaagcagc 105
             ||||||||||||||||||||
Sbjct: 90375 cagcaacagcaacaagcagc 90394

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>gb|AC013726.7| Homo sapiens BAC clone RP11-400N9 from 2, complete sequence
          Length = 214647

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 334    ttcaccctgcccttcctctcctcc 357
              ||||||||||||||||| ||||||
Sbjct: 137494 ttcaccctgcccttcctttcctcc 137471

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>gb|AC010726.4|AC010726 Homo sapiens BAC clone RP11-224C16 from Y, complete sequence
          Length = 176524

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    aaataaagaaaaaatcaaca 155
              ||||||||||||||||||||
Sbjct: 174013 aaataaagaaaaaatcaaca 173994

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>gb|AC092925.8| Homo sapiens 3 BAC RP11-78O22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 148130

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 421   tgagcagcttcacccctgttgctt 444
             ||||||||||||| ||||||||||
Sbjct: 74280 tgagcagcttcactcctgttgctt 74257

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>gb|AC117497.3| Homo sapiens 12 BAC RP11-422O21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 87243

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   atggaatacaaatggaccaa 176
             ||||||||||||||||||||
Sbjct: 73406 atggaatacaaatggaccaa 73425

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>gb|AC124804.10| Homo sapiens chromosome 17, clone RP11-449L23, complete sequence
          Length = 203066

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 407    ccttcctccacgactgagca 426
              ||||||||||||||||||||
Sbjct: 110220 ccttcctccacgactgagca 110201

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>gb|AC133647.3| Mus musculus BAC clone RP23-287D22 from chromosome 7, complete sequence
          Length = 197003

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ataaagaaaaaatcaacaca 157
             ||||||||||||||||||||
Sbjct: 31471 ataaagaaaaaatcaacaca 31452

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>gb|M74895.1|SMFPOLORF Simian foamy virus type 3, gag polyprotein 3' end, pol polyprotein 3'
            end, env protein 3' end, orf1 3' end, orf2 partial cds,
            and orf3 3' end
          Length = 13111

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   accagcaacagcaacaagca 103
            ||||||||||||||||||||
Sbjct: 3467 accagcaacagcaacaagca 3486

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>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_A08
          Length = 119304

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   cagtacaggatgcacccagg 251
             ||||||||||||||||||||
Sbjct: 33551 cagtacaggatgcacccagg 33532

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>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0050G13
          Length = 150685

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 354   ctccaggagcttgcttttggtctcctcgatcacgtcgttg 393
             |||||||||||||||    | |||||||||||||||||||
Sbjct: 40723 ctccaggagcttgctccgcgcctcctcgatcacgtcgttg 40762

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>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1123_G04
          Length = 124666

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 232    cagtacaggatgcacccagg 251
              ||||||||||||||||||||
Sbjct: 117341 cagtacaggatgcacccagg 117322

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>emb|AL772341.12| Mouse DNA sequence from clone RP23-179N22 on chromosome 2, complete
             sequence
          Length = 219412

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   caaggccttcaccctgccct 346
             ||||||||||||||||||||
Sbjct: 67950 caaggccttcaccctgccct 67931

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>gb|AC114558.18| Mus musculus chromosome 8, clone RP23-47G19, complete sequence
          Length = 262311

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   ttcaccctgcccttcctctc 353
             ||||||||||||||||||||
Sbjct: 86387 ttcaccctgcccttcctctc 86368

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>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 329    aggccttcaccctgcccttcctct 352
              ||||||||||||||| ||||||||
Sbjct: 678509 aggccttcaccctgcgcttcctct 678532

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>gb|AC150271.4| Mus musculus BAC clone RP23-289F8 from 7, complete sequence
          Length = 202277

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    ataaagaaaaaatcaacaca 157
              ||||||||||||||||||||
Sbjct: 184910 ataaagaaaaaatcaacaca 184929

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>gb|AE003733.3| Drosophila melanogaster chromosome 3R, section 71 of 118 of the
             complete sequence
          Length = 235707

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    cagcaacagcaacaagcagc 105
             ||||||||||||||||||||
Sbjct: 14238 cagcaacagcaacaagcagc 14257

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>gb|AC153821.6| Mus musculus 10 BAC RP23-193A14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 204618

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    ccctgcccttcctctcctcc 357
              ||||||||||||||||||||
Sbjct: 169974 ccctgcccttcctctcctcc 169955

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>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence
          Length = 1844853

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 371     tggtctcctcgatcacgtcg 390
               ||||||||||||||||||||
Sbjct: 1658624 tggtctcctcgatcacgtcg 1658643

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>gb|AC149869.2| Mus musculus BAC clone RP23-3E12 from 7, complete sequence
          Length = 195392

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ataaagaaaaaatcaacaca 157
             ||||||||||||||||||||
Sbjct: 31508 ataaagaaaaaatcaacaca 31489

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>gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, complete sequence
          Length = 223030

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 422    gagcagcttcacccctgttg 441
              ||||||||||||||||||||
Sbjct: 146413 gagcagcttcacccctgttg 146432

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>gb|AF009897.1|AF009897 Drosophila melanogaster 3Na(+)-1Ca(2+) exchanger (Calx) mRNA,
            complete cds
          Length = 5408

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 86   cagcaacagcaacaagcagc 105
            ||||||||||||||||||||
Sbjct: 1022 cagcaacagcaacaagcagc 1041

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>emb|AL117209.7|CNS01DRH Human chromosome 14 DNA sequence BAC R-365N19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 159602

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 347    tcctctcctccaggagcttgcttt 370
              |||||||| |||||||||||||||
Sbjct: 101393 tcctctcccccaggagcttgcttt 101370

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>gb|L13448.1|MUSGSTM101 Mouse glutathione transferase mu (GSTM1) gene, exons 1-5
          Length = 2408

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  aatacaaatggaccaaggaa 180
            ||||||||||||||||||||
Sbjct: 1256 aatacaaatggaccaaggaa 1237

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>gb|AC104451.2| Homo sapiens chromosome 3 clone RP11-632N2, complete sequence
          Length = 173103

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    gcactactccttgaaggaca 304
              ||||||||||||||||||||
Sbjct: 153941 gcactactccttgaaggaca 153960

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>emb|AL671877.15| Mouse DNA sequence from clone RP23-214E3 on chromosome 3, complete
              sequence
          Length = 146015

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    aatacaaatggaccaaggaa 180
              ||||||||||||||||||||
Sbjct: 104547 aatacaaatggaccaaggaa 104566


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,730,581
Number of Sequences: 3902068
Number of extensions: 4730581
Number of successful extensions: 121428
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 120931
Number of HSP's gapped (non-prelim): 493
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result