ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet113e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STAT1_PIG (Q764M5) Signal transducer and activator of transcript... 32 1.2
2STAT1_HUMAN (P42224) Signal transducer and activator of transcri... 32 1.2
3APE1_AERPE (O73942) Homing endonuclease I-ApeI (EC 3.1.-.-) (rRN... 30 2.6
4MPD2_YEAST (Q99316) Protein disulfide isomerase MPD2 precursor (... 29 7.5
5DPOLZ_MOUSE (Q61493) DNA polymerase zeta catalytic subunit (EC 2... 28 9.7
6PE2R4_HUMAN (P35408) Prostaglandin E2 receptor, EP4 subtype (Pro... 28 9.7

>STAT1_PIG (Q764M5) Signal transducer and activator of transcription 1|
          Length = 757

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 69  LPGPVGQGYILVEYISVARVRPRTSKGITDLLLPQT 176
           L GP G GYI  E ISV+ V P   +  TD LLP +
Sbjct: 693 LDGPKGTGYIKTELISVSEVHPSRLQ-TTDNLLPMS 727



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>STAT1_HUMAN (P42224) Signal transducer and activator of transcription|
           1-alpha/beta (Transcription factor ISGF-3 components
           p91/p84)
          Length = 750

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 69  LPGPVGQGYILVEYISVARVRPRTSKGITDLLLPQT 176
           L GP G GYI  E ISV+ V P   +  TD LLP +
Sbjct: 693 LDGPKGTGYIKTELISVSEVHPSRLQ-TTDNLLPMS 727



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>APE1_AERPE (O73942) Homing endonuclease I-ApeI (EC 3.1.-.-) (rRNA|
           intron-encoded homing endonuclease 1)
          Length = 222

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -3

Query: 458 KLKGIDGRAPPGVEPAA 408
           KLKGI G AP GVEPAA
Sbjct: 206 KLKGIGGGAPQGVEPAA 222



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>MPD2_YEAST (Q99316) Protein disulfide isomerase MPD2 precursor (EC 5.3.4.1)|
          Length = 277

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 365 LCLDLVSFPVLGQIKPQAPRLVVP 436
           LC DL  FP++  +KP+   LV+P
Sbjct: 98  LCTDLPGFPIIELVKPRTKPLVLP 121



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>DPOLZ_MOUSE (Q61493) DNA polymerase zeta catalytic subunit (EC 2.7.7.7)|
            (Seizure-related protein 4)
          Length = 3122

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 281  QTNRSTN*ERPCTTTHRIKKELSVCQSLLCLDLVSFPVLGQIKPQAPRLVVPFRQ 445
            Q  +STN  +  T+TH+  K +SV       +  + PV    KP+ PR   P  Q
Sbjct: 1537 QKAQSTNVVQDSTSTHQPDKNISVSNEHKKANKRTRPVTSPRKPRTPRRTKPKEQ 1591



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>PE2R4_HUMAN (P35408) Prostaglandin E2 receptor, EP4 subtype (Prostanoid EP4|
           receptor) (PGE receptor, EP4 subtype)
          Length = 488

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 255 SAC*LAMRSHPSAASFLEGLSPFRRRK-FEAITG 157
           +A  +A R HP+A+  L  LS FRRR+ F  I G
Sbjct: 232 AAASVASRGHPAASPALPRLSDFRRRRSFRRIAG 265


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,764,073
Number of Sequences: 219361
Number of extensions: 1467187
Number of successful extensions: 2991
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2991
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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