ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet112h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ006296.1|HVU6296 Hordeum vulgare partial mRNA for chloroph... 620 e-175
2ref|XM_507368.1| PREDICTED Oryza sativa (japonica cultivar-group... 149 6e-33
3ref|XM_478692.1| Oryza sativa (japonica cultivar-group), mRNA 149 6e-33
4ref|XM_507367.1| PREDICTED Oryza sativa (japonica cultivar-group... 149 6e-33
5ref|XM_507366.1| PREDICTED Oryza sativa (japonica cultivar-group... 149 6e-33
6ref|XM_506405.2| PREDICTED Oryza sativa (japonica cultivar-group... 149 6e-33
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 149 6e-33
8dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic D... 149 6e-33
9dbj|AK119534.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 6e-33
10dbj|AK104619.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 6e-33
11dbj|AK104309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 6e-33
12dbj|AK103924.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 6e-33
13dbj|AK098992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 6e-33
14dbj|AK058293.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 6e-33
15gb|AF058796.1|AF058796 Oryza sativa chlorophyll a/b-binding prot... 149 6e-33
16gb|AY103995.1| Zea mays PCO102677 mRNA sequence 145 1e-31
17emb|Z50801.1|ZMCABCP29 Z.mays mRNA for chlorophyll a/b-binding p... 137 2e-29
18gb|AF139466.2|AF139466 Vigna radiata chlorophyll a/b binding pro... 68 2e-08
19emb|BX822730.1|CNS0A5TB Arabidopsis thaliana Full-length cDNA Co... 62 1e-06
20ref|NM_111728.2| Arabidopsis thaliana LHCB4.2 AT3G08940 (LHCB4.2... 54 3e-04
21ref|NM_180214.1| Arabidopsis thaliana LHCB4.2; chlorophyll bindi... 54 3e-04
22gb|AC010871.7|ATAC010871 Arabidopsis thaliana chromosome III BAC... 54 3e-04
23gb|AY081608.1| Arabidopsis thaliana putative chlorophyll a/b-bin... 54 3e-04
24gb|AY065140.1| Arabidopsis thaliana putative chlorophyll a/b-bin... 54 3e-04
25emb|BX822436.1|CNS0A619 Arabidopsis thaliana Full-length cDNA Co... 54 3e-04
26emb|BX823814.1|CNS0A5CT Arabidopsis thaliana Full-length cDNA Co... 54 3e-04
27emb|BX823751.1|CNS0A5AT Arabidopsis thaliana Full-length cDNA Co... 54 3e-04
28emb|BX823498.1|CNS0A5AS Arabidopsis thaliana Full-length cDNA Co... 54 3e-04
29emb|BX823817.1|CNS0A4NR Arabidopsis thaliana Full-length cDNA Co... 54 3e-04
30emb|BX823629.1|CNS0A4ND Arabidopsis thaliana Full-length cDNA Co... 54 3e-04
31gb|AF134127.1| Arabidopsis thaliana Lhcb4.2 protein (Lhcb4.2) mR... 54 3e-04
32ref|NM_120231.3| Arabidopsis thaliana chlorophyll binding AT5G01... 52 0.001
33gb|BT000363.1| Arabidopsis thaliana chlorophyll a/b-binding prot... 52 0.001
34emb|AL161946.1|ATF7A7 Arabidopsis thaliana DNA chromosome 5, BAC... 52 0.001
35gb|AY133566.1| Arabidopsis thaliana At5g01530/F7A7_50 mRNA, comp... 52 0.001
36gb|AY092980.1| Arabidopsis thaliana chlorophyll a/b-binding prot... 52 0.001
37gb|AY081680.1| Arabidopsis thaliana chlorophyll a/b-binding prot... 52 0.001
38gb|AY059861.1| Arabidopsis thaliana chlorophyll a/b-binding prot... 52 0.001
39gb|AY057641.1| Arabidopsis thaliana AT5g01530/F7A7_50 mRNA, comp... 52 0.001
40dbj|AK221043.1| Arabidopsis thaliana mRNA for Lhcb4- protein, pa... 52 0.001
41gb|AY048300.1| Arabidopsis thaliana AT5g01530/F7A7_50 mRNA, comp... 52 0.001
42gb|AF370474.1|AF370474 Arabidopsis thaliana chlorophyll a/b-bind... 52 0.001
43emb|BX833597.1|CNS0A1R6 Arabidopsis thaliana Full-length cDNA Co... 52 0.001
44emb|BX831442.1|CNS0A1WM Arabidopsis thaliana Full-length cDNA Co... 52 0.001
45emb|BX830127.1|CNS0A1XL Arabidopsis thaliana Full-length cDNA Co... 52 0.001
46emb|BX830573.1|CNS0A06T Arabidopsis thaliana Full-length cDNA Co... 52 0.001
47emb|BX831299.1|CNS09ZIA Arabidopsis thaliana Full-length cDNA Co... 52 0.001
48emb|BX831064.1|CNS09ZJ3 Arabidopsis thaliana Full-length cDNA Co... 52 0.001
49emb|BX830905.1|CNS09ZE8 Arabidopsis thaliana Full-length cDNA Co... 52 0.001
50emb|BX830685.1|CNS09ZE5 Arabidopsis thaliana Full-length cDNA Co... 52 0.001
51emb|X71878.1|ATLHCB4 A.thaliana Lhcb4 gene 52 0.001
52emb|BX823387.1|CNS0A5AY Arabidopsis thaliana Full-length cDNA Co... 46 0.069
53emb|BX841630.1|CNS09YKO Arabidopsis thaliana Full-length cDNA Co... 44 0.27
54gb|AY245372.1| Iris fulva clone LFR3-3 IRRE retrotransposon, par... 42 1.1
55gb|AC003680.3| Arabidopsis thaliana chromosome 2 BAC F17K2 genom... 42 1.1
56gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 42 1.1
57ref|NM_184305.2| Oryza sativa (japonica cultivar-group), mRNA 40 4.3
58ref|XM_477163.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.3
59gb|AC129553.10| Mus musculus chromosome 5, clone RP24-351J24, co... 40 4.3
60gb|AY313897.1| Danio rerio ion channel NompC (nompc) mRNA, compl... 40 4.3
61emb|BX842653.1| Bdellovibrio bacteriovorus complete genome, stra... 40 4.3
62gb|AC026101.24| Homo sapiens 3 BAC RP11-441D23 (Roswell Park Can... 40 4.3
63dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
64ref|NM_204787.1| Gallus gallus proteoglycan (PG-M), mRNA 40 4.3
65dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
66dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
67dbj|AK065008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
68dbj|AP000805.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 4.3
69ref|NM_183349.1| Danio rerio transient receptor potential cation... 40 4.3
70gb|AC133110.2| Homo sapiens BAC clone RP11-761N10 from 4, comple... 40 4.3
71dbj|D13542.1|CHKPRGL Chicken mRNA for proteoglycan, complete cds 40 4.3 
>emb|AJ006296.1|HVU6296 Hordeum vulgare partial mRNA for chlorophyll a/b-binding protein
          Length = 470

 Score =  620 bits (313), Expect = e-175
 Identities = 323/325 (99%), Gaps = 1/325 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgtacaagtggatgcatt-gagtcaccattggttcatattttacaaatcaccaagtcc 59
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gatgtacaagtggatccatttgagtcaccattggttcatattttacaaatcaccaagtcc 397

                                                                       
Query: 60  cagcagctctcctatgtgatcggaccagcattataatcaacaaaggatctttgcgatacc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cagcagctctcctatgtgatcggaccagcattataatcaacaaaggatctttgcgatacc 337

                                                                       
Query: 120 ctctcatccatcactcgtcatacaaaaccaaagcacgttcgttacacggacgcgcgttcg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctctcatccatcactcgtcatacaaaaccaaagcacgttcgttacacggacgcgcgttcg 277

                                                                       
Query: 180 tccattttgcagctgagctgacagaaactgctcgaccaccgaccacttaagaggagccga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tccattttgcagctgagctgacagaaactgctcgaccaccgaccacttaagaggagccga 217

                                                                       
Query: 240 aggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgagcg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgagcg 157

                                    
Query: 300 gacccttgccggtggcggcggcctg 324
           |||||||||||||||||||||||||
Sbjct: 156 gacccttgccggtggcggcggcctg 132
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>ref|XM_507368.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA
          Length = 1156

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 902 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 843

                                      
Query: 298 cggacccttgccggtggcggcggcctg 324
            || |||||||||||||||||||||||
Sbjct: 842 gggccccttgccggtggcggcggcctg 816



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatgtacaagtggatgcatt 20
            ||||||||||||||||||||
Sbjct: 1156 gatgtacaagtggatgcatt 1137
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>ref|XM_478692.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1152

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 897 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 838

                                      
Query: 298 cggacccttgccggtggcggcggcctg 324
            || |||||||||||||||||||||||
Sbjct: 837 gggccccttgccggtggcggcggcctg 811



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatgtacaagtggatgcatt 20
            ||||||||||||||||||||
Sbjct: 1151 gatgtacaagtggatgcatt 1132
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>ref|XM_507367.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA
          Length = 1162

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 904 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 845

                                      
Query: 298 cggacccttgccggtggcggcggcctg 324
            || |||||||||||||||||||||||
Sbjct: 844 gggccccttgccggtggcggcggcctg 818



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatgtacaagtggatgcatt 20
            ||||||||||||||||||||
Sbjct: 1158 gatgtacaagtggatgcatt 1139
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>ref|XM_507366.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA
          Length = 1183

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 904 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 845

                                      
Query: 298 cggacccttgccggtggcggcggcctg 324
            || |||||||||||||||||||||||
Sbjct: 844 gggccccttgccggtggcggcggcctg 818



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatgtacaagtggatgcatt 20
            ||||||||||||||||||||
Sbjct: 1158 gatgtacaagtggatgcatt 1139
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>ref|XM_506405.2| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA
          Length = 1221

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 918 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 859

                                      
Query: 298 cggacccttgccggtggcggcggcctg 324
            || |||||||||||||||||||||||
Sbjct: 858 gggccccttgccggtggcggcggcctg 832



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatgtacaagtggatgcatt 20
            ||||||||||||||||||||
Sbjct: 1172 gatgtacaagtggatgcatt 1153
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Plus

                                                                            
Query: 238      gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
                |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22263067 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 22263126

                                           
Query: 298      cggacccttgccggtggcggcggcctg 324
                 || |||||||||||||||||||||||
Sbjct: 22263127 gggccccttgccggtggcggcggcctg 22263153



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        gatgtacaagtggatgcatt 20
                ||||||||||||||||||||
Sbjct: 22262813 gatgtacaagtggatgcatt 22262832



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                           
Query: 157     ttcgttacacggacgcgcgttcgtccat 184
               ||||||||||||||| ||||||||||||
Sbjct: 7208546 ttcgttacacggacg-gcgttcgtccat 7208572
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>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0567H04
          Length = 181420

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Plus

                                                                         
Query: 238   gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 68313 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 68372

                                        
Query: 298   cggacccttgccggtggcggcggcctg 324
              || |||||||||||||||||||||||
Sbjct: 68373 gggccccttgccggtggcggcggcctg 68399



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     gatgtacaagtggatgcatt 20
             ||||||||||||||||||||
Sbjct: 68059 gatgtacaagtggatgcatt 68078
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>dbj|AK119534.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B02, full
           insert sequence
          Length = 1234

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 904 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 845

                                      
Query: 298 cggacccttgccggtggcggcggcctg 324
            || |||||||||||||||||||||||
Sbjct: 844 gggccccttgccggtggcggcggcctg 818



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatgtacaagtggatgcatt 20
            ||||||||||||||||||||
Sbjct: 1158 gatgtacaagtggatgcatt 1139
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>dbj|AK104619.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F11, full
           insert sequence
          Length = 1152

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 897 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 838

                                      
Query: 298 cggacccttgccggtggcggcggcctg 324
            || |||||||||||||||||||||||
Sbjct: 837 gggccccttgccggtggcggcggcctg 811



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatgtacaagtggatgcatt 20
            ||||||||||||||||||||
Sbjct: 1151 gatgtacaagtggatgcatt 1132
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>dbj|AK104309.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D03, full
           insert sequence
          Length = 1169

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 911 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 852

                                      
Query: 298 cggacccttgccggtggcggcggcctg 324
            || |||||||||||||||||||||||
Sbjct: 851 gggccccttgccggtggcggcggcctg 825



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatgtacaagtggatgcatt 20
            ||||||||||||||||||||
Sbjct: 1165 gatgtacaagtggatgcatt 1146
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>dbj|AK103924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C12, full
           insert sequence
          Length = 1183

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 904 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 845

                                      
Query: 298 cggacccttgccggtggcggcggcctg 324
            || |||||||||||||||||||||||
Sbjct: 844 gggccccttgccggtggcggcggcctg 818



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatgtacaagtggatgcatt 20
            ||||||||||||||||||||
Sbjct: 1158 gatgtacaagtggatgcatt 1139
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>dbj|AK098992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098H13, full
           insert sequence
          Length = 1156

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 902 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 843

                                      
Query: 298 cggacccttgccggtggcggcggcctg 324
            || |||||||||||||||||||||||
Sbjct: 842 gggccccttgccggtggcggcggcctg 816
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>dbj|AK058293.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F01, full
           insert sequence
          Length = 1221

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 918 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 859

                                      
Query: 298 cggacccttgccggtggcggcggcctg 324
            || |||||||||||||||||||||||
Sbjct: 858 gggccccttgccggtggcggcggcctg 832



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatgtacaagtggatgcatt 20
            ||||||||||||||||||||
Sbjct: 1172 gatgtacaagtggatgcatt 1153
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>gb|AF058796.1|AF058796 Oryza sativa chlorophyll a/b-binding protein (RCABP69) mRNA,
           complete cds
          Length = 1178

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 902 gaaggtgtcgaagatggtggtgtggagcgggtcgctgaggtgggtggcccagttgttgag 843

                                      
Query: 298 cggacccttgccggtggcggcggcctg 324
            || |||||||||||||||||||||||
Sbjct: 842 gggccccttgccggtggcggcggcctg 816



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatgtacaagtggatgcatt 20
            ||||||||||||||||||||
Sbjct: 1156 gatgtacaagtggatgcatt 1137
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>gb|AY103995.1| Zea mays PCO102677 mRNA sequence
          Length = 1225

 Score =  145 bits (73), Expect = 1e-31
 Identities = 85/89 (95%)
 Strand = Plus / Minus

                                                                       
Query: 236 ccgaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttg 295
           ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 918 ccgaacgtgtcgaagatggtggtgtggagcgggtcgctcaggtgggtggcccagttgttg 859

                                        
Query: 296 agcggacccttgccggtggcggcggcctg 324
           ||||| |||||||||||||||||||||||
Sbjct: 858 agcggccccttgccggtggcggcggcctg 830



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 30   ttggttcatattttacaaatcaccaagtcccagc 63
            |||| |||||| ||||||| ||||||||||||||
Sbjct: 1153 ttggatcatatattacaaaccaccaagtcccagc 1120
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>emb|Z50801.1|ZMCABCP29 Z.mays mRNA for chlorophyll a/b-binding protein CP29
          Length = 1162

 Score =  137 bits (69), Expect = 2e-29
 Identities = 84/89 (94%)
 Strand = Plus / Minus

                                                                       
Query: 236 ccgaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttg 295
           ||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 873 ccgaacgtgtcgaagatggtagtgtggagcgggtcgctcaggtgggtggcccagttgttg 814

                                        
Query: 296 agcggacccttgccggtggcggcggcctg 324
           ||||| |||||||||||||||||||||||
Sbjct: 813 agcggccccttgccggtggcggcggcctg 785



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 30   ttggttcatattttacaaatcaccaagtcccagc 63
            |||| |||||| ||||||| ||||||||||||||
Sbjct: 1104 ttggatcatatattacaaaccaccaagtcccagc 1071
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>gb|AF139466.2|AF139466 Vigna radiata chlorophyll a/b binding protein CP29 (CipCp29) mRNA,
           complete cds; nuclear gene for chloroplast product
          Length = 1118

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           ||||||||| | |||||| ||||| || ||||| || | |||||||||||||||||||||
Sbjct: 918 gaaggtgtcaatgatggttgtgtgaagtgggtcactcaagtgggtggcccagttgttgag 859

                             
Query: 298 cggacccttgccggtggc 315
            || |||||||| |||||
Sbjct: 858 tgggcccttgccagtggc 841
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>emb|BX822730.1|CNS0A5TB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB5ZH12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 971

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||| || ||||| || ||||| |||||||||||||||||
Sbjct: 863 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtggcccagttgttgag 804

              
Query: 298 cgg 300
           |||
Sbjct: 803 cgg 801
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>ref|NM_111728.2| Arabidopsis thaliana LHCB4.2 AT3G08940 (LHCB4.2) transcript variant
           AT3G08940.2 mRNA, complete cds
          Length = 1109

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 893 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtcgcccagttgttgag 834

              
Query: 298 cgg 300
           |||
Sbjct: 833 cgg 831
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>ref|NM_180214.1| Arabidopsis thaliana LHCB4.2; chlorophyll binding AT3G08940
           (LHCB4.2) transcript variant AT3G08940.1 mRNA, complete
           cds
          Length = 1194

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 978 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtcgcccagttgttgag 919

              
Query: 298 cgg 300
           |||
Sbjct: 918 cgg 916
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>gb|AC010871.7|ATAC010871 Arabidopsis thaliana chromosome III BAC T16O11 genomic sequence,
             complete sequence
          Length = 80381

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                         
Query: 238   gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
             |||||| ||||  ||||||||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 37892 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtcgcccagttgttgag 37951

                
Query: 298   cgg 300
             |||
Sbjct: 37952 cgg 37954
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>gb|AY081608.1| Arabidopsis thaliana putative chlorophyll a/b-binding protein
           (At3g08940) mRNA, complete cds
          Length = 881

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 852 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtcgcccagttgttgag 793

              
Query: 298 cgg 300
           |||
Sbjct: 792 cgg 790
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>gb|AY065140.1| Arabidopsis thaliana putative chlorophyll a/b-binding protein
           (At3g08940; T16O11.12) mRNA, complete cds
          Length = 1023

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 893 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtcgcccagttgttgag 834

              
Query: 298 cgg 300
           |||
Sbjct: 833 cgg 831
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>emb|BX822436.1|CNS0A619 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB38ZB11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1004

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 874 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtcgcccagttgttgag 815

              
Query: 298 cgg 300
           |||
Sbjct: 814 cgg 812
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>emb|BX823814.1|CNS0A5CT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS78ZG07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 688

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 555 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtcgcccagttgttgag 496

              
Query: 298 cgg 300
           |||
Sbjct: 495 cgg 493
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>emb|BX823751.1|CNS0A5AT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS72ZB02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 981

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 873 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtcgcccagttgttgag 814

              
Query: 298 cgg 300
           |||
Sbjct: 813 cgg 811
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>emb|BX823498.1|CNS0A5AS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS44ZD12 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 990

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 883 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtcgcccagttgttgag 824

              
Query: 298 cgg 300
           |||
Sbjct: 823 cgg 821
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>emb|BX823817.1|CNS0A4NR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS7ZA03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 691

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 558 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtcgcccagttgttgag 499

              
Query: 298 cgg 300
           |||
Sbjct: 498 cgg 496
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>emb|BX823629.1|CNS0A4ND Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS5ZA12 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 992

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 877 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtcgcccagttgttgag 818

              
Query: 298 cgg 300
           |||
Sbjct: 817 cgg 815
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>gb|AF134127.1| Arabidopsis thaliana Lhcb4.2 protein (Lhcb4.2) mRNA, complete cds
          Length = 1040

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 896 gaaggtatcgataatggtggtgtgaagtgggtcactaaggtgagtcgcccagttgttgag 837

              
Query: 298 cgg 300
           |||
Sbjct: 836 cgg 834
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>ref|NM_120231.3| Arabidopsis thaliana chlorophyll binding AT5G01530 mRNA, complete cds
          Length = 1222

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                        
Query: 238  gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
            |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 1008 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 949

                  
Query: 298  cggacc 303
             |||||
Sbjct: 948  tggacc 943
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>gb|BT000363.1| Arabidopsis thaliana chlorophyll a/b-binding protein CP29
           (At5g01530) mRNA, complete cds
          Length = 966

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 861 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 802

                 
Query: 298 cggacc 303
            |||||
Sbjct: 801 tggacc 796
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>emb|AL161946.1|ATF7A7 Arabidopsis thaliana DNA chromosome 5, BAC clone F7A7 (ESSA project)
          Length = 86690

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                         
Query: 238   gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
             |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 17890 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 17831

                   
Query: 298   cggacc 303
              |||||
Sbjct: 17830 tggacc 17825
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>gb|AY133566.1| Arabidopsis thaliana At5g01530/F7A7_50 mRNA, complete cds
          Length = 873

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 861 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 802

                 
Query: 298 cggacc 303
            |||||
Sbjct: 801 tggacc 796
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>gb|AY092980.1| Arabidopsis thaliana chlorophyll a/b-binding protein CP29
           (At5g01530) mRNA, complete cds
          Length = 1094

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 896 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 837

                 
Query: 298 cggacc 303
            |||||
Sbjct: 836 tggacc 831
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>gb|AY081680.1| Arabidopsis thaliana chlorophyll a/b-binding protein CP29
           (At5g01530) mRNA, complete cds
          Length = 947

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 861 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 802

                 
Query: 298 cggacc 303
            |||||
Sbjct: 801 tggacc 796
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>gb|AY059861.1| Arabidopsis thaliana chlorophyll a/b-binding protein CP29
           (At5g01530; F7A7_50) mRNA, complete cds
          Length = 1023

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 897 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 838

                 
Query: 298 cggacc 303
            |||||
Sbjct: 837 tggacc 832
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>gb|AY057641.1| Arabidopsis thaliana AT5g01530/F7A7_50 mRNA, complete cds
          Length = 1113

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 896 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 837

                 
Query: 298 cggacc 303
            |||||
Sbjct: 836 tggacc 831
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>dbj|AK221043.1| Arabidopsis thaliana mRNA for Lhcb4- protein, partial cds, clone:
           RAFL22-74-I16
          Length = 212

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 107 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 48

                 
Query: 298 cggacc 303
            |||||
Sbjct: 47  tggacc 42
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>gb|AY048300.1| Arabidopsis thaliana AT5g01530/F7A7_50 mRNA, complete cds
          Length = 1074

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 898 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 839

                 
Query: 298 cggacc 303
            |||||
Sbjct: 838 tggacc 833
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>gb|AF370474.1|AF370474 Arabidopsis thaliana chlorophyll a/b-binding protein CP29 (F7A7_50)
           mRNA, complete cds
          Length = 1064

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 921 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 862

                 
Query: 298 cggacc 303
            |||||
Sbjct: 861 tggacc 856
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>emb|BX833597.1|CNS0A1R6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL65ZB03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 970

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 882 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 823

                 
Query: 298 cggacc 303
            |||||
Sbjct: 822 tggacc 817
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>emb|BX831442.1|CNS0A1WM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS90ZH01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 954

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 866 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 807

                 
Query: 298 cggacc 303
            |||||
Sbjct: 806 tggacc 801
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>emb|BX830127.1|CNS0A1XL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB61ZD03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 963

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 859 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 800

                 
Query: 298 cggacc 303
            |||||
Sbjct: 799 tggacc 794
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>emb|BX830573.1|CNS0A06T Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB90ZH03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1043

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 985 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 926

                 
Query: 298 cggacc 303
            |||||
Sbjct: 925 tggacc 920
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>emb|BX831299.1|CNS09ZIA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS77ZA02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 946

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 883 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 824

                 
Query: 298 cggacc 303
            |||||
Sbjct: 823 tggacc 818
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>emb|BX831064.1|CNS09ZJ3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS54ZH08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1077

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 882 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 823

                 
Query: 298 cggacc 303
            |||||
Sbjct: 822 tggacc 817
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>emb|BX830905.1|CNS09ZE8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS38ZG11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 941

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 882 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 823

                 
Query: 298 cggacc 303
            |||||
Sbjct: 822 tggacc 817
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>emb|BX830685.1|CNS09ZE5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS14ZD06 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 940

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 882 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 823

                 
Query: 298 cggacc 303
            |||||
Sbjct: 822 tggacc 817
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>emb|X71878.1|ATLHCB4 A.thaliana Lhcb4 gene
          Length = 2100

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                        
Query: 238  gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
            |||||| |||| |||||||||||| || || || |||||||| || ||||| ||||||||
Sbjct: 1991 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgagtagcccaattgttgag 1932

                  
Query: 298  cggacc 303
             |||||
Sbjct: 1931 tggacc 1926
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>emb|BX823387.1|CNS0A5AY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS31ZA02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 918

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| ||||  ||||||||||  || ||||| || ||||| || ||||||||||||||
Sbjct: 878 gaaggtatcgataatggtggtgttaagtgggtcactaaggtgagtcgcccagttgttgag 819

              
Query: 298 cgg 300
           |||
Sbjct: 818 cgg 816
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>emb|BX841630.1|CNS09YKO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB55ZH10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1015

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                       
Query: 238 gaaggtgtcgaagatggtggtgtgcagcgggtcgctgaggtgggtggcccagttgttgag 297
           |||||| |||| |||||||||||| || || || |||||||| |  ||||| ||||||||
Sbjct: 882 gaaggtatcgatgatggtggtgtggagtggatcactgaggtgaggagcccaattgttgag 823

                 
Query: 298 cggacc 303
            |||||
Sbjct: 822 tggacc 817
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>gb|AY245372.1| Iris fulva clone LFR3-3 IRRE retrotransposon, partial sequence
          Length = 3850

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 267  ggtcgctgaggtgggtggccc 287
            |||||||||||||||||||||
Sbjct: 2333 ggtcgctgaggtgggtggccc 2353
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>gb|AC003680.3| Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete
             sequence
          Length = 91854

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    cattggttcatattttacaaa 48
             |||||||||||||||||||||
Sbjct: 52509 cattggttcatattttacaaa 52489
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 304     cttgccggtggcggcggcctg 324
               |||||||||||||||||||||
Sbjct: 2347780 cttgccggtggcggcggcctg 2347800
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>ref|NM_184305.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1511

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 302 cccttgccggtggcggcggc 321
           ||||||||||||||||||||
Sbjct: 807 cccttgccggtggcggcggc 788
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>ref|XM_477163.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 267

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 157 ttcgttacacggacgcgcgttcgtccat 184
           ||||||||||||||| ||||||||||||
Sbjct: 27  ttcgttacacggacg-gcgttcgtccat 1
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>gb|AC129553.10| Mus musculus chromosome 5, clone RP24-351J24, complete sequence
          Length = 152414

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 271   gctgaggtgggtggcccagttgtt 294
             ||||||||||||||||||| ||||
Sbjct: 23315 gctgaggtgggtggcccagatgtt 23292
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>gb|AY313897.1| Danio rerio ion channel NompC (nompc) mRNA, complete cds
          Length = 5533

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 199  gacagaaactgctcgaccaccgac 222
            ||||||||||||| ||||||||||
Sbjct: 4952 gacagaaactgctggaccaccgac 4929
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>emb|BX842653.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 8/11
          Length = 347636

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aaaccaaagcacgttcgtta 163
              ||||||||||||||||||||
Sbjct: 227818 aaaccaaagcacgttcgtta 227837
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>gb|AC026101.24| Homo sapiens 3 BAC RP11-441D23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164728

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     ttcatattttacaaatcacc 53
              ||||||||||||||||||||
Sbjct: 147265 ttcatattttacaaatcacc 147246
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 302     cccttgccggtggcggcggc 321
               ||||||||||||||||||||
Sbjct: 2202083 cccttgccggtggcggcggc 2202064
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>ref|NM_204787.1| Gallus gallus proteoglycan (PG-M), mRNA
          Length = 12307

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 187  tgcagctgagctgacagaaactgc 210
            |||||| |||||||||||||||||
Sbjct: 7500 tgcagcagagctgacagaaactgc 7523
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>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0480E02
          Length = 141862

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    cccttgccggtggcggcggc 321
              ||||||||||||||||||||
Sbjct: 123195 cccttgccggtggcggcggc 123176
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>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0016A21
          Length = 144076

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 157   ttcgttacacggacgcgcgttcgtccat 184
             ||||||||||||||| ||||||||||||
Sbjct: 49030 ttcgttacacggacg-gcgttcgtccat 49056
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>dbj|AK065008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E21, full
           insert sequence
          Length = 1512

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 302 cccttgccggtggcggcggc 321
           ||||||||||||||||||||
Sbjct: 807 cccttgccggtggcggcggc 788
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>dbj|AP000805.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-698L23, complete
             sequence
          Length = 180996

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    caccaagtcccagcagctct 69
             ||||||||||||||||||||
Sbjct: 38344 caccaagtcccagcagctct 38325
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>ref|NM_183349.1| Danio rerio transient receptor potential cation channel, subfamily N,
            member 1 (trpn1), mRNA
          Length = 5533

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 199  gacagaaactgctcgaccaccgac 222
            ||||||||||||| ||||||||||
Sbjct: 4952 gacagaaactgctggaccaccgac 4929
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>gb|AC133110.2| Homo sapiens BAC clone RP11-761N10 from 4, complete sequence
          Length = 59902

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  tgaggtgggtggcccagttg 292
            ||||||||||||||||||||
Sbjct: 9918 tgaggtgggtggcccagttg 9899
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>dbj|D13542.1|CHKPRGL Chicken mRNA for proteoglycan, complete cds
          Length = 12307

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 187  tgcagctgagctgacagaaactgc 210
            |||||| |||||||||||||||||
Sbjct: 7500 tgcagcagagctgacagaaactgc 7523


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,939,034
Number of Sequences: 3902068
Number of extensions: 2939034
Number of successful extensions: 85095
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 84876
Number of HSP's gapped (non-prelim): 222
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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