ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet112g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 613 e-172
2gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 515 e-143
3gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 476 e-131
4gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 454 e-124
5gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 448 e-123
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 329 4e-87
7gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 176 3e-41
8emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 167 3e-38
9dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
10dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
11dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
12dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
13dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 135 1e-28
14gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
15gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
16gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 133 5e-28
17dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 133 5e-28
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 133 5e-28
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 121 2e-24
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 2e-18
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
25dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
26gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 68 2e-08
27gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 68 2e-08
28gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 68 2e-08
29gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 68 2e-08
30gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 48 0.021
31gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl... 44 0.32
32emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.32
33gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, co... 42 1.3
34gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 1.3
35gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec... 42 1.3
36gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 1.3
37gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, c... 42 1.3
38gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, com... 42 1.3
39dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIK... 42 1.3
40dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
41gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet... 42 1.3
42gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
43emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.3
44gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 1.3
45gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 5.0
46gb|U60105.1| Bos taurus large conductance calcium-activated pota... 40 5.0
47gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 5.0
48gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 5.0
49gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 5.0
50gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 5.0
51gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 5.0
52gb|AF026000.2| Sus scrofa calcium-activated potassium channel al... 40 5.0
53gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 5.0
54ref|NM_174680.2| Bos taurus potassium large conductance calcium-... 40 5.0
55gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.0
56dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 5.0
57gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 5.0
58gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN... 40 5.0
59gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN... 40 5.0
60gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN... 40 5.0
61emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 5.0
62ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ... 40 5.0
63ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 5.0
64gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 5.0
65gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 5.0
66gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 5.0 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  613 bits (309), Expect = e-172
 Identities = 349/356 (98%), Gaps = 5/356 (1%)
 Strand = Plus / Minus

                                                                        
Query: 28   tttgccaaatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaa 86
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1709 tttgccaaatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaa 1650

                                                                        
Query: 87   tcgcttggatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgc 145
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1649 tcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgc 1590

                                                                        
Query: 146  ttaaaaggtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttgg 204
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1589 ttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttgg 1530

                                                                        
Query: 205  cattttggtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacct 263
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1529 cattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacct 1470

                                                                        
Query: 264  cctcctatgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaa 322
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1469 cctcctatgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaa 1410

                                                                    
Query: 323  ccagncttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggt 378
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 ccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggt 1354
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  515 bits (260), Expect = e-143
 Identities = 263/264 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    gacaaatgataagtaggtgtattggtctttgccaaatgggtatactcaatatatttagag 60
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7786 gacaaatgataagtaggtgtattggtctttgccaaatgggtatacacaatatatttagag 7727

                                                                        
Query: 61   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7726 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaa 7667

                                                                        
Query: 121  acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7666 acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcc 7607

                                                                        
Query: 181  ttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaag 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7606 ttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaag 7547

                                    
Query: 241  taccttgctgtgctcctttacctc 264
            ||||||||||||||||||||||||
Sbjct: 7546 taccttgctgtgctcctttacctc 7523



 Score =  230 bits (116), Expect = 3e-57
 Identities = 118/119 (99%)
 Strand = Plus / Minus

                                                                        
Query: 260  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                       
Query: 320  gaaccagncttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggt 378
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggt 7237
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  476 bits (240), Expect = e-131
 Identities = 347/380 (91%), Gaps = 11/380 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   aatgataagtaggtgtattggtctttgccaaatgggtatactcaatatatttagagatat 64
           ||||||||||||   |||| |||||| |||||| |||||||||||||| ||||    |||
Sbjct: 798 aatgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta----tat 743

                                                                       
Query: 65  attaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta-----ggta 118
           ||||||||||||||||||||||||||||||||||||||||| |||||||||     | ||
Sbjct: 742 attaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaaggata 683

                                                                       
Query: 119 aaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgct 178
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 682 aaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcact 624

                                                                       
Query: 179 ccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaa 238
           ||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |||||
Sbjct: 623 cctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggcaa 564

                                                                       
Query: 239 agtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatgg 298
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgtatgg 504

                                                                       
Query: 299 agaattttctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccaga 358
           ||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 503 agaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacccaga 444

                               
Query: 359 gctgcctggctcatgtaggt 378
           ||||||||||||||||||||
Sbjct: 443 gctgcctggctcatgtaggt 424
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  454 bits (229), Expect = e-124
 Identities = 302/324 (93%), Gaps = 7/324 (2%)
 Strand = Plus / Minus

                                                                        
Query: 61   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 114
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 115  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 174
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 175  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 234
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 235  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 294
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 295  atggagaattttctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcacc 354
            ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                    
Query: 355  cagagctgcctggctcatgtaggt 378
            ||||||||||||||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggt 1274
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  448 bits (226), Expect = e-123
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                        
Query: 33   caaatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgctt 92
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 caaatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgctt 1335

                                                                        
Query: 93   ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1275

                                                                        
Query: 153  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 1215

                                                              
Query: 213  tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 262
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165



 Score =  131 bits (66), Expect = 2e-27
 Identities = 68/69 (98%)
 Strand = Plus / Minus

                                                                        
Query: 310  accgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggct 369
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                     
Query: 370  catgtaggt 378
            |||||||||
Sbjct: 1107 catgtaggt 1099
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  329 bits (166), Expect = 4e-87
 Identities = 275/308 (89%), Gaps = 9/308 (2%)
 Strand = Plus / Minus

                                                                        
Query: 75   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 128
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 129  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 187
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 188  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 247
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                                        
Query: 248  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 307
             ||||||||||||||||||||||||||||||||||||||||  ||||||| ||| | |||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgg--gtgtatgaagagtgttc 1356

                                                                        
Query: 308  taaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctgg 367
            ||||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296

                    
Query: 368  ctcatgta 375
            ||||||||
Sbjct: 1295 ctcatgta 1288
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  176 bits (89), Expect = 3e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 134  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 193
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 194  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 253
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 254  tcctttacc 262
            |||||||||
Sbjct: 1369 tcctttacc 1361



 Score =  101 bits (51), Expect = 2e-18
 Identities = 62/66 (93%)
 Strand = Plus / Minus

                                                                        
Query: 310  accgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggct 369
            ||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                  
Query: 370  catgta 375
            ||||||
Sbjct: 1303 catgta 1298
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>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  167 bits (84), Expect = 3e-38
 Identities = 89/91 (97%)
 Strand = Plus / Minus

                                                                       
Query: 288 ggtgtgtatggagaattttctaaccgtagaaggaaccagncttcatcgcatcctggttag 347
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                          
Query: 348 catcacccagagctgcctggctcatgtaggt 378
           |||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggt 218
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 203  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 259
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 260  acctcctcct 269
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 368
            |||||||||||||||||| |||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

               
Query: 369  tca 371
            |||
Sbjct: 1250 tca 1248
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 203  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 259
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 260  acctcctcct 269
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 368
            |||||||||||||||||| |||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

               
Query: 369  tca 371
            |||
Sbjct: 1288 tca 1286
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 203  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 259
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 260  acctcctcct 269
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 368
            |||||||||||||||||| |||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

               
Query: 369  tca 371
            |||
Sbjct: 1287 tca 1285
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 203  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 259
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 260  acctcctcct 269
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 368
            |||||||||||||||||| |||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

               
Query: 369  tca 371
            |||
Sbjct: 1071 tca 1069
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 203  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 259
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 260  acctcctcct 269
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 368
            |||||||||||||||||| |||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

               
Query: 369  tca 371
            |||
Sbjct: 1292 tca 1290
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 143    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 203    ggcattttggtcggtgcaaccttccggcacgggca 237
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 161    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 220
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 221    accttccggcacggg 235
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                          
Query: 306    tctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcct 365
              ||||||||||||||||||||| |||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                    
Query: 366    ggctca 371
               |||||
Sbjct: 108366 cgctca 108371
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 143   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 203   ggcattttggtcggtgcaaccttccggcacgggca 237
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 161   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 220
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 221   accttccggcacggg 235
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                         
Query: 306   tctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcct 365
             ||||||||||||||||||||| |||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                   
Query: 366   ggctca 371
              |||||
Sbjct: 30243 cgctca 30248
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 203  ggcattttggtcggtgcaaccttccggcacgggca 237
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 368
            |||||||||||||||||| |||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

               
Query: 369  tca 371
            |||
Sbjct: 1256 tca 1254
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 203  ggcattttggtcggtgcaaccttccggcacgggca 237
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 311  ccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggctc 370
            |||||||||||||||| |||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

             
Query: 371  a 371
            |
Sbjct: 1249 a 1249
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 143      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 203      ggcattttggtcggtgcaaccttccggcacgggca 237
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 161      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 220
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 221      accttccggcacggg 235
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                            
Query: 306      tctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcct 365
                ||||||||||||||||||||| |||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                      
Query: 366      ggctca 371
                 |||||
Sbjct: 28303505 cgctca 28303510
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 143      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 203      ggcattttggtcggtgcaaccttccggcacgggca 237
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 161      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 220
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 221      accttccggcacggg 235
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                            
Query: 306      tctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcct 365
                ||||||||||||||||||||| |||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                      
Query: 366      ggctca 371
                 |||||
Sbjct: 28285954 cgctca 28285959
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 203  ggcattttggtcggtgcaaccttccggcacgggca 237
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 311  ccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggctc 370
            |||||||||||||||| |||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

             
Query: 371  a 371
            |
Sbjct: 1284 a 1284
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>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 149 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 208
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 209 ttggtcggtgcaaccttccggcacgggca 237
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
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>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 7e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 203  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 259
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 260  acctcctcct 269
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 368
            |||||||||||||||||| |||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

               
Query: 369  tca 371
            |||
Sbjct: 1299 tca 1297
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>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 143 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 203 ggcattttggtcggtgcaaccttccggcacgggca 237
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 143     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 203     ggcattttggtcggtgcaaccttccggcacgggca 237
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 143   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 202
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 203   ggcattttggtcggtgcaaccttccggcacgggca 237
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
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>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 153  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 212
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 213  tcggtgcaaccttc 226
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
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>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 153  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 212
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 213  tcggtgcaaccttc 226
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
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>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 153  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 212
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 213  tcggtgcaaccttc 226
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
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>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 153  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 212
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 213  tcggtgcaaccttc 226
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232
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>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 309 aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 368
           |||||||||||||||||| |||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

              
Query: 369 tca 371
           |||
Sbjct: 505 tca 503
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>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 348   catcacccagagctgcctggct 369
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254
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>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 48    aatatatttagagatatattaa 69
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963
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>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence
          Length = 178257

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 5      aatgataagtaggtgtattgg 25
              |||||||||||||||||||||
Sbjct: 109370 aatgataagtaggtgtattgg 109390
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>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 50    tatatttagagatatattaac 70
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
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>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 335  gcatcctggttagcatcacccagagctgcctggctcatgta 375
            |||||||||||||||||||| || || ||||  ||||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgta 1315
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>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 50    tatatttagagatatattaac 70
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
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>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence
          Length = 217738

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 5      aatgataagtaggtgtattgg 25
              |||||||||||||||||||||
Sbjct: 149522 aatgataagtaggtgtattgg 149502
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>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence
          Length = 168084

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 5      aatgataagtaggtgtattgg 25
              |||||||||||||||||||||
Sbjct: 131097 aatgataagtaggtgtattgg 131077
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>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530024M06 product:Hypothetical
            protein FLJ33092 (UST1r) homolog [Homo sapiens], full
            insert sequence
          Length = 2605

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    aatgataagtaggtgtattgg 25
            |||||||||||||||||||||
Sbjct: 2351 aatgataagtaggtgtattgg 2331
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 119     aaacatcagatattaaaagtg 139
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
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>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 270   atgcagcaagagatggtgggt 290
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 119     aaacatcagatattaaaagtg 139
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 119    aaacatcagatattaaaagtg 139
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
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>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 50   tatatttagagatatattaac 70
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
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>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   cctttacctcctcctatgca 274
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378
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>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 348  catcacccagagctgcctggctca 371
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565
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>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 255  cctttacctcctcctatgca 274
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656
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>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   cctttacctcctcctatgca 274
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    tcagatattaaaagtggcat 143
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    tcagatattaaaagtggcat 143
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   tcagatattaaaagtggcat 143
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
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>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 348  catcacccagagctgcctggctca 371
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
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>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aatatatttagagatatatt 67
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473
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>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 348  catcacccagagctgcctggctca 371
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
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>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 152  ggtgtaaaggcagctgccgtcgtcgctc 179
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    aaacatgcccagcaatcgcttgga 95
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   cctttacctcctcctatgca 274
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681
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>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 348  catcacccagagctgcctggctca 371
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659
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>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 348  catcacccagagctgcctggctca 371
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026
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>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 348  catcacccagagctgcctggctca 371
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   tggcatgcttaaaaggtgta 157
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 348  catcacccagagctgcctggctca 371
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
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>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 244 cttgctgtgctcctttacctcctc 267
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625
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>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   cctttacctcctcctatgca 274
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736
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>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    aatatatttagagatatatt 67
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 123    atcagatattaaaagtggcatgct 146
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,092,872
Number of Sequences: 3902068
Number of extensions: 3092872
Number of successful extensions: 63017
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62777
Number of HSP's gapped (non-prelim): 208
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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