ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet112e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 226 5e-56
2dbj|AK099798.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 5e-56
3dbj|AK061957.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 5e-56
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 226 5e-56
5emb|AL713900.4|CNS07YQ0 Oryza sativa chromosome 12, . BAC OJ1126... 226 5e-56
6gb|AY106468.1| Zea mays PCO103506 mRNA sequence 212 7e-52
7dbj|AB112936.1| Zea mays ZmpOMT1 mRNA for plastidic 2-oxoglutara... 204 2e-49
8emb|BX830891.1|CNS0A0U0 Arabidopsis thaliana Full-length cDNA Co... 72 2e-09
9ref|NM_121289.3| Arabidopsis thaliana oxoglutarate:malate antipo... 64 4e-07
10emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, B... 64 4e-07
11gb|AF370494.1|AF370494 Arabidopsis thaliana 2-oxoglutarate/malat... 64 4e-07
12emb|BX831984.1|CNS0A12U Arabidopsis thaliana Full-length cDNA Co... 64 4e-07
13emb|BX831708.1|CNS0A15V Arabidopsis thaliana Full-length cDNA Co... 64 4e-07
14emb|BX831583.1|CNS0A162 Arabidopsis thaliana Full-length cDNA Co... 64 4e-07
15emb|BX831893.1|CNS0A11L Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
16emb|BX833869.1|CNS0A0DK Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
17gb|AY279308.1| Malus x domestica oxoglutarate/malate translocato... 54 4e-04
18dbj|AB190775.1| Mesembryanthemum crystallinum DCT1 mRNA for puta... 46 0.098
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
20dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
21dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
22gb|AC110090.6| Mus musculus BAC clone RP23-27L4 from chromosome ... 42 1.5
23gb|AC110607.7| Homo sapiens chromosome 15, clone CTD-2632K10, co... 42 1.5
24gb|AC092891.5| Homo sapiens 12 BAC RP11-495C19 (Roswell Park Can... 42 1.5
25ref|NM_123924.2| Arabidopsis thaliana lipid binding AT5G45560 mR... 40 6.0
26gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.0
27gb|AC007861.5| Homo sapiens chromosome 16 clone RP11-189E14, com... 40 6.0
28gb|AC007607.6| Homo sapiens chromosome 16 clone RP11-369H7, comp... 40 6.0
29emb|AL603913.14| Mouse DNA sequence from clone RP23-103H9 on chr... 40 6.0
30emb|BX897725.7| Zebrafish DNA sequence from clone CH211-244P18 i... 40 6.0
31gb|AE011845.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.0
32gb|AY064989.1| Arabidopsis thaliana AT5g45560/MFC19_23 mRNA, com... 40 6.0
33dbj|AB022213.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.0
34gb|AC006499.13|AC006499 Homo sapiens chromosome 4 clone C0494H11... 40 6.0
35emb|AL929049.4| Zebrafish DNA sequence from clone DKEY-14A13 in ... 40 6.0

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  226 bits (114), Expect = 5e-56
 Identities = 240/282 (85%)
 Strand = Plus / Minus

                                                                            
Query: 160      catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 219
                |||||||| || | |||||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 20049373 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 20049314

                                                                            
Query: 220      ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 279
                |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| ||
Sbjct: 20049313 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 20049254

                                                                            
Query: 280      aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 339
                ||||||||| || || |||||||| || || ||||| || ||||| || || || |||||
Sbjct: 20049253 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 20049194

                                                                            
Query: 340      catgaggtttgaaaggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggc 399
                ||||| |||||| |||||||| | |||||||||||| |  || ||||| |||||||||||
Sbjct: 20049193 catgatgtttgagaggaatgaaagaaccatggcagcaattagaggaggagtgcccaaggc 20049134

                                                          
Query: 400      acttgccacagacaggaacgcagtgaacatcgctccgatgtg 441
                 || | ||| ||||  || ||||||||||| ||||| |||||
Sbjct: 20049133 gctggacactgacaaaaatgcagtgaacattgctccaatgtg 20049092



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 35       aaacaattgtacgggtacaaactaaaagaatgg 67
                |||||| ||||  ||||||||||||||||||||
Sbjct: 20049519 aaacaaatgtattggtacaaactaaaagaatgg 20049487



to top

>dbj|AK099798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097M20, full
            insert sequence
          Length = 1962

 Score =  226 bits (114), Expect = 5e-56
 Identities = 240/282 (85%)
 Strand = Plus / Minus

                                                                        
Query: 160  catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 219
            |||||||| || | |||||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 1700 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 1641

                                                                        
Query: 220  ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 279
            |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| ||
Sbjct: 1640 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 1581

                                                                        
Query: 280  aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 339
            ||||||||| || || |||||||| || || ||||| || ||||| || || || |||||
Sbjct: 1580 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 1521

                                                                        
Query: 340  catgaggtttgaaaggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggc 399
            ||||| |||||| |||||||| | |||||||||||| |  || ||||| |||||||||||
Sbjct: 1520 catgatgtttgagaggaatgaaagaaccatggcagcaattagaggaggagtgcccaaggc 1461

                                                      
Query: 400  acttgccacagacaggaacgcagtgaacatcgctccgatgtg 441
             || | ||| ||||  || ||||||||||| ||||| |||||
Sbjct: 1460 gctggacactgacaaaaatgcagtgaacattgctccaatgtg 1419



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 35   aaacaattgtacgggtacaaactaaaagaatgg 67
            |||||| ||||  ||||||||||||||||||||
Sbjct: 1846 aaacaaatgtattggtacaaactaaaagaatgg 1814



to top

>dbj|AK061957.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F09, full
            insert sequence
          Length = 1506

 Score =  226 bits (114), Expect = 5e-56
 Identities = 240/282 (85%)
 Strand = Plus / Minus

                                                                        
Query: 160  catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 219
            |||||||| || | |||||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 1308 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 1249

                                                                        
Query: 220  ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 279
            |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| ||
Sbjct: 1248 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 1189

                                                                        
Query: 280  aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 339
            ||||||||| || || |||||||| || || ||||| || ||||| || || || |||||
Sbjct: 1188 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 1129

                                                                        
Query: 340  catgaggtttgaaaggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggc 399
            ||||| |||||| |||||||| | |||||||||||| |  || ||||| |||||||||||
Sbjct: 1128 catgatgtttgagaggaatgaaagaaccatggcagcaattagaggaggagtgcccaaggc 1069

                                                      
Query: 400  acttgccacagacaggaacgcagtgaacatcgctccgatgtg 441
             || | ||| ||||  || ||||||||||| ||||| |||||
Sbjct: 1068 gctggacactgacaaaaatgcagtgaacattgctccaatgtg 1027



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 35   aaacaattgtacgggtacaaactaaaagaatgg 67
            |||||| ||||  ||||||||||||||||||||
Sbjct: 1454 aaacaaatgtattggtacaaactaaaagaatgg 1422



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  226 bits (114), Expect = 5e-56
 Identities = 240/282 (85%)
 Strand = Plus / Minus

                                                                            
Query: 160      catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 219
                |||||||| || | |||||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 19975587 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 19975528

                                                                            
Query: 220      ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 279
                |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| ||
Sbjct: 19975527 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 19975468

                                                                            
Query: 280      aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 339
                ||||||||| || || |||||||| || || ||||| || ||||| || || || |||||
Sbjct: 19975467 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 19975408

                                                                            
Query: 340      catgaggtttgaaaggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggc 399
                ||||| |||||| |||||||| | |||||||||||| |  || ||||| |||||||||||
Sbjct: 19975407 catgatgtttgagaggaatgaaagaaccatggcagcaattagaggaggagtgcccaaggc 19975348

                                                          
Query: 400      acttgccacagacaggaacgcagtgaacatcgctccgatgtg 441
                 || | ||| ||||  || ||||||||||| ||||| |||||
Sbjct: 19975347 gctggacactgacaaaaatgcagtgaacattgctccaatgtg 19975306



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 35       aaacaattgtacgggtacaaactaaaagaatgg 67
                |||||| ||||  ||||||||||||||||||||
Sbjct: 19975733 aaacaaatgtattggtacaaactaaaagaatgg 19975701



to top

>emb|AL713900.4|CNS07YQ0 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 99791

 Score =  226 bits (114), Expect = 5e-56
 Identities = 240/282 (85%)
 Strand = Plus / Minus

                                                                         
Query: 160   catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 219
             |||||||| || | |||||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 29535 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 29476

                                                                         
Query: 220   ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 279
             |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| ||
Sbjct: 29475 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 29416

                                                                         
Query: 280   aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 339
             ||||||||| || || |||||||| || || ||||| || ||||| || || || |||||
Sbjct: 29415 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 29356

                                                                         
Query: 340   catgaggtttgaaaggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggc 399
             ||||| |||||| |||||||| | |||||||||||| |  || ||||| |||||||||||
Sbjct: 29355 catgatgtttgagaggaatgaaagaaccatggcagcaattagaggaggagtgcccaaggc 29296

                                                       
Query: 400   acttgccacagacaggaacgcagtgaacatcgctccgatgtg 441
              || | ||| ||||  || ||||||||||| ||||| |||||
Sbjct: 29295 gctggacactgacaaaaatgcagtgaacattgctccaatgtg 29254



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 35    aaacaattgtacgggtacaaactaaaagaatgg 67
             |||||| ||||  ||||||||||||||||||||
Sbjct: 29681 aaacaaatgtattggtacaaactaaaagaatgg 29649



to top

>gb|AY106468.1| Zea mays PCO103506 mRNA sequence
          Length = 845

 Score =  212 bits (107), Expect = 7e-52
 Identities = 230/271 (84%)
 Strand = Plus / Minus

                                                                       
Query: 174 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233
           |||||||||  || || ||||||||||||||||| ||  | || ||||||||||||||||
Sbjct: 581 ctcaccacagcccgattatcttccaccagaagccgcccaccccgagccagatgatgatgt 522

                                                                       
Query: 234 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293
           | ||||||||||||||||| |||||||||||||||| |||||  || ||||| || || |
Sbjct: 521 ttacaacggagatgacaaacccatagccccaccactgagccaatgggacatacccggcgc 462

                                                                       
Query: 294 catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353
           | ||||||||||| || || || ||||| || |||||    || ||||||||||| || |
Sbjct: 461 cgtagaagacgggagcagagccgatgccgtagtgggtggtcccgcccatgaggttcgaga 402

                                                                       
Query: 354 ggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggcacttgccacagaca 413
           ||||||| | ||||||||||||||||||||  |||||||||| |||||| ||||| ||||
Sbjct: 401 ggaatgaaagaaccatggcagcgaaaagcgacggggtgcccagggcactcgccaccgaca 342

                                          
Query: 414 ggaacgcagtgaacatcgctccgatgtgtgc 444
           ||||||| |||||||| ||||||||||||||
Sbjct: 341 ggaacgcggtgaacattgctccgatgtgtgc 311



to top

>dbj|AB112936.1| Zea mays ZmpOMT1 mRNA for plastidic 2-oxoglutarate/malate
            transporter, complete cds
          Length = 1907

 Score =  204 bits (103), Expect = 2e-49
 Identities = 229/271 (84%)
 Strand = Plus / Minus

                                                                        
Query: 174  ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233
            |||||||||  || || ||||||||||||||||| ||  | || ||||||||||||||||
Sbjct: 1760 ctcaccacagcccgattatcttccaccagaagccgcccaccccgagccagatgatgatgt 1701

                                                                        
Query: 234  taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293
            | ||||||||||||||||| |||||||||||||||| |||||  || ||||| || || |
Sbjct: 1700 ttacaacggagatgacaaacccatagccccaccactgagccaatgggacatacccggcgc 1641

                                                                        
Query: 294  catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353
            | ||||||||||| || || || ||||| || |||||    || ||||||||||| || |
Sbjct: 1640 cgtagaagacgggagcagagccgatgccgtagtgggtggtcccgcccatgaggttcgaga 1581

                                                                        
Query: 354  ggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggcacttgccacagaca 413
            ||||||| | ||||||||||||||| ||||  |||||||||| |||||| ||||| ||||
Sbjct: 1580 ggaatgaaagaaccatggcagcgaagagcgacggggtgcccagggcactcgccaccgaca 1521

                                           
Query: 414  ggaacgcagtgaacatcgctccgatgtgtgc 444
            ||||||| |||||||| ||||||||||||||
Sbjct: 1520 ggaacgcggtgaacattgctccgatgtgtgc 1490



to top

>emb|BX830891.1|CNS0A0U0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS37ZB03 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1880

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 147/184 (79%)
 Strand = Plus / Minus

                                                                        
Query: 174  ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233
            |||||||||| ||||| | ||||||||||   || ||  |||||||||||||||  ||||
Sbjct: 1696 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1637

                                                                        
Query: 234  taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293
            | || |  ||||| |  ||||||||||||||||| | ||||||||| || |||   ||||
Sbjct: 1636 tgactattgagatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1577

                                                                        
Query: 294  catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353
            | |||||||  || || ||||| || |||||||||||||  || ||||| ||||| ||||
Sbjct: 1576 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 1517

                
Query: 354  ggaa 357
            ||||
Sbjct: 1516 ggaa 1513



to top

>ref|NM_121289.3| Arabidopsis thaliana oxoglutarate:malate antiporter AT5G12860 mRNA,
            complete cds
          Length = 1946

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 146/184 (79%)
 Strand = Plus / Minus

                                                                        
Query: 174  ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233
            |||||||||| ||||| | ||||||||||   || ||  |||||||||||||||  ||||
Sbjct: 1706 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1647

                                                                        
Query: 234  taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293
            | || |  || || |  ||||||||||||||||| | ||||||||| || |||   ||||
Sbjct: 1646 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1587

                                                                        
Query: 294  catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353
            | |||||||  || || ||||| || |||||||||||||  || ||||| ||||| ||||
Sbjct: 1586 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 1527

                
Query: 354  ggaa 357
            ||||
Sbjct: 1526 ggaa 1523



to top

>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
          Length = 90020

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 146/184 (79%)
 Strand = Plus / Plus

                                                                         
Query: 174   ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233
             |||||||||| ||||| | ||||||||||   || ||  |||||||||||||||  ||||
Sbjct: 11743 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 11802

                                                                         
Query: 234   taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293
             | || |  || || |  ||||||||||||||||| | ||||||||| || |||   ||||
Sbjct: 11803 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 11862

                                                                         
Query: 294   catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353
             | |||||||  || || ||||| || |||||||||||||  || ||||| ||||| ||||
Sbjct: 11863 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 11922

                 
Query: 354   ggaa 357
             ||||
Sbjct: 11923 ggaa 11926



to top

>gb|AF370494.1|AF370494 Arabidopsis thaliana 2-oxoglutarate/malate translocator
            precursor-like protein (T24H18.30) mRNA, complete cds
          Length = 1827

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 146/184 (79%)
 Strand = Plus / Minus

                                                                        
Query: 174  ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233
            |||||||||| ||||| | ||||||||||   || ||  |||||||||||||||  ||||
Sbjct: 1628 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1569

                                                                        
Query: 234  taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293
            | || |  || || |  ||||||||||||||||| | ||||||||| || |||   ||||
Sbjct: 1568 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1509

                                                                        
Query: 294  catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353
            | |||||||  || || ||||| || |||||||||||||  || ||||| ||||| ||||
Sbjct: 1508 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 1449

                
Query: 354  ggaa 357
            ||||
Sbjct: 1448 ggaa 1445



to top

>emb|BX831984.1|CNS0A12U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH43ZF10 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 865

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 146/184 (79%)
 Strand = Plus / Minus

                                                                       
Query: 174 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233
           |||||||||| ||||| | ||||||||||   || ||  |||||||||||||||  ||||
Sbjct: 681 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 622

                                                                       
Query: 234 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293
           | || |  || || |  ||||||||||||||||| | ||||||||| || |||   ||||
Sbjct: 621 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 562

                                                                       
Query: 294 catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353
           | |||||||  || || ||||| || |||||||||||||  || ||||| ||||| ||||
Sbjct: 561 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 502

               
Query: 354 ggaa 357
           ||||
Sbjct: 501 ggaa 498



to top

>emb|BX831708.1|CNS0A15V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH25ZB11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1833

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 146/184 (79%)
 Strand = Plus / Minus

                                                                        
Query: 174  ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233
            |||||||||| ||||| | ||||||||||   || ||  |||||||||||||||  ||||
Sbjct: 1694 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1635

                                                                        
Query: 234  taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293
            | || |  || || |  ||||||||||||||||| | ||||||||| || |||   ||||
Sbjct: 1634 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1575

                                                                        
Query: 294  catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353
            | |||||||  || || ||||| || |||||||||||||  || ||||| ||||| ||||
Sbjct: 1574 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 1515

                
Query: 354  ggaa 357
            ||||
Sbjct: 1514 ggaa 1511



to top

>emb|BX831583.1|CNS0A162 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH16ZF08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1841

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 146/184 (79%)
 Strand = Plus / Minus

                                                                        
Query: 174  ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233
            |||||||||| ||||| | ||||||||||   || ||  |||||||||||||||  ||||
Sbjct: 1687 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1628

                                                                        
Query: 234  taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293
            | || |  || || |  ||||||||||||||||| | ||||||||| || |||   ||||
Sbjct: 1627 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1568

                                                                        
Query: 294  catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353
            | |||||||  || || ||||| || |||||||||||||  || ||||| ||||| ||||
Sbjct: 1567 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 1508

                
Query: 354  ggaa 357
            ||||
Sbjct: 1507 ggaa 1504



to top

>emb|BX831893.1|CNS0A11L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH37ZF03 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1842

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Minus

                                                                        
Query: 251  aatccatagccccaccactcagccagcggaacatagcccgctccatagaagacgggggct 310
            ||||||||||||||||| | ||||||||| || |||   ||||| |||||||  || || 
Sbjct: 1669 aatccatagccccaccatttagccagcggcacgtagttagctccgtagaagataggcgca 1610

                                                           
Query: 311  gaccctatgccataatgggtcaggccacccatgaggtttgaaaggaa 357
            ||||| || |||||||||||||  || ||||| ||||| ||||||||
Sbjct: 1609 gacccgataccataatgggtcaatcctcccatcaggttggaaaggaa 1563



to top

>emb|BX833869.1|CNS0A0DK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL80ZD02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 769

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Minus

                                                                       
Query: 251 aatccatagccccaccactcagccagcggaacatagcccgctccatagaagacgggggct 310
           ||||||||||||||||| | ||||||||| || |||   ||||| |||||||  || || 
Sbjct: 452 aatccatagccccaccatttagccagcggcacgtagttagctccgtagaagataggcgca 393

                                                          
Query: 311 gaccctatgccataatgggtcaggccacccatgaggtttgaaaggaa 357
           ||||| || |||||||||||||  || ||||| ||||| ||||||||
Sbjct: 392 gacccgataccataatgggtcaatcctcccatcaggttggaaaggaa 346



to top

>gb|AY279308.1| Malus x domestica oxoglutarate/malate translocator-like mRNA,
           partial sequence
          Length = 419

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 293 ccatagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaa 352
           |||||||| || || ||||| || ||||| |||||||| || |||||||||||||| || 
Sbjct: 98  ccatagaaaacaggtgctgatccaatgccgtaatgggtaagaccacccatgaggttggag 39

                  
Query: 353 aggaatg 359
           |||||||
Sbjct: 38  aggaatg 32



to top

>dbj|AB190775.1| Mesembryanthemum crystallinum DCT1 mRNA for putative plastidic
            2-oxoglutarate/malate translocator, partial cds
          Length = 1719

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                        
Query: 293  ccatagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaa 352
            |||||||| || |||||||| || || || || ||||| ||||| ||||||||||| || 
Sbjct: 1163 ccatagaaaactggggctgaaccaataccgtagtgggtaaggccgcccatgaggttggac 1104

                   
Query: 353  aggaatg 359
            |||||||
Sbjct: 1103 aggaatg 1097



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 223     gatgatgatgttaacaacggag 244
               ||||||||||||||||||||||
Sbjct: 5575716 gatgatgatgttaacaacggag 5575695



to top

>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0081K20
          Length = 117287

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 223   gatgatgatgttaacaacggag 244
             ||||||||||||||||||||||
Sbjct: 88801 gatgatgatgttaacaacggag 88780



to top

>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0431A02
          Length = 165038

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 223   gatgatgatgttaacaacggag 244
             ||||||||||||||||||||||
Sbjct: 37408 gatgatgatgttaacaacggag 37387



to top

>gb|AC110090.6| Mus musculus BAC clone RP23-27L4 from chromosome 1, complete sequence
          Length = 218518

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 389   gtgcccaaggcacttgccaca 409
             |||||||||||||||||||||
Sbjct: 99819 gtgcccaaggcacttgccaca 99839



to top

>gb|AC110607.7| Homo sapiens chromosome 15, clone CTD-2632K10, complete sequence
          Length = 160452

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 258   agccccaccactcagccagcg 278
             |||||||||||||||||||||
Sbjct: 12214 agccccaccactcagccagcg 12194



to top

>gb|AC092891.5| Homo sapiens 12 BAC RP11-495C19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 109440

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 178   ccacaaaccaatcatcttccaccag 202
             |||||| ||||||||||||||||||
Sbjct: 83801 ccacaatccaatcatcttccaccag 83777



to top

>ref|NM_123924.2| Arabidopsis thaliana lipid binding AT5G45560 mRNA, complete cds
          Length = 2540

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   actaaaagaatggatcatgt 74
            ||||||||||||||||||||
Sbjct: 1833 actaaaagaatggatcatgt 1852



to top

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 134     cgccctcgtcgaaataggaagtcc 157
               ||||||||||||||||||| ||||
Sbjct: 1443551 cgccctcgtcgaaataggacgtcc 1443528



to top

>gb|AC007861.5| Homo sapiens chromosome 16 clone RP11-189E14, complete sequence
          Length = 175861

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 407   acagacaggaacgcagtgaacatc 430
             |||||||||||| |||||||||||
Sbjct: 43413 acagacaggaactcagtgaacatc 43436



to top

>gb|AC007607.6| Homo sapiens chromosome 16 clone RP11-369H7, complete sequence
          Length = 158941

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 407    acagacaggaacgcagtgaacatc 430
              |||||||||||| |||||||||||
Sbjct: 156047 acagacaggaactcagtgaacatc 156070



to top

>emb|AL603913.14| Mouse DNA sequence from clone RP23-103H9 on chromosome 11 Contains the
             gene for a novel protein (3732413I11Rik), a novel gene
             (4930597A21Rik), the 5' end of the Ebf1 gene for early
             B-cell factor 1, a novel gene and a CpG island, complete
             sequence
          Length = 215524

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   ggtgcccaaggcacttgcca 407
             ||||||||||||||||||||
Sbjct: 57884 ggtgcccaaggcacttgcca 57865



to top

>emb|BX897725.7| Zebrafish DNA sequence from clone CH211-244P18 in linkage group 20
              Contains the gene for a novel protein similar to vertebrate
              delta-like 4 (Drosophila) (DLL4), the vps18 gene for
              vacuolar protein sorting protein 18, the gene for a novel
              protein containing an SNF2 family N-terminal domain and a
              Helicase conserved C-terminal domain, the gene for a novel
              protein similar to vertebrate ras homolog gene family,
              member V (RHOV), the gene for a novel protein containing a
              ChaC-like protein domain and three CpG islands, complete
              sequence
          Length = 170125

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    ccacttgcaaatgttttgct 124
              ||||||||||||||||||||
Sbjct: 153015 ccacttgcaaatgttttgct 153034



to top

>gb|AE011845.1| Xanthomonas axonopodis pv. citri str. 306,  section 223 of 469 of the
            complete genome
          Length = 13475

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    catcagataccacttgccag 22
            ||||||||||||||||||||
Sbjct: 2069 catcagataccacttgccag 2050



to top

>gb|AY064989.1| Arabidopsis thaliana AT5g45560/MFC19_23 mRNA, complete cds
          Length = 2540

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   actaaaagaatggatcatgt 74
            ||||||||||||||||||||
Sbjct: 1833 actaaaagaatggatcatgt 1852



to top

>dbj|AB022213.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2N11
          Length = 30340

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   actaaaagaatggatcatgt 74
            ||||||||||||||||||||
Sbjct: 4179 actaaaagaatggatcatgt 4198



to top

>gb|AC006499.13|AC006499 Homo sapiens chromosome 4 clone C0494H11, complete sequence
          Length = 195384

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   cagaagcctccagcaccaag 219
             ||||||||||||||||||||
Sbjct: 26195 cagaagcctccagcaccaag 26214



to top

>emb|AL929049.4| Zebrafish DNA sequence from clone DKEY-14A13 in linkage group 20,
              complete sequence
          Length = 223182

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    ccacttgcaaatgttttgct 124
              ||||||||||||||||||||
Sbjct: 160254 ccacttgcaaatgttttgct 160273


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,609,586
Number of Sequences: 3902068
Number of extensions: 3609586
Number of successful extensions: 66907
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66777
Number of HSP's gapped (non-prelim): 127
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top