| Clone Name | rbaet112e12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 226 bits (114), Expect = 5e-56 Identities = 240/282 (85%) Strand = Plus / Minus Query: 160 catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 219 |||||||| || | |||||||||| || | |||||||||||||||||||||||||||||| Sbjct: 20049373 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 20049314 Query: 220 ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 279 |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| || Sbjct: 20049313 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 20049254 Query: 280 aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 339 ||||||||| || || |||||||| || || ||||| || ||||| || || || ||||| Sbjct: 20049253 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 20049194 Query: 340 catgaggtttgaaaggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggc 399 ||||| |||||| |||||||| | |||||||||||| | || ||||| ||||||||||| Sbjct: 20049193 catgatgtttgagaggaatgaaagaaccatggcagcaattagaggaggagtgcccaaggc 20049134 Query: 400 acttgccacagacaggaacgcagtgaacatcgctccgatgtg 441 || | ||| |||| || ||||||||||| ||||| ||||| Sbjct: 20049133 gctggacactgacaaaaatgcagtgaacattgctccaatgtg 20049092 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 aaacaattgtacgggtacaaactaaaagaatgg 67 |||||| |||| |||||||||||||||||||| Sbjct: 20049519 aaacaaatgtattggtacaaactaaaagaatgg 20049487
>dbj|AK099798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097M20, full insert sequence Length = 1962 Score = 226 bits (114), Expect = 5e-56 Identities = 240/282 (85%) Strand = Plus / Minus Query: 160 catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 219 |||||||| || | |||||||||| || | |||||||||||||||||||||||||||||| Sbjct: 1700 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 1641 Query: 220 ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 279 |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| || Sbjct: 1640 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 1581 Query: 280 aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 339 ||||||||| || || |||||||| || || ||||| || ||||| || || || ||||| Sbjct: 1580 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 1521 Query: 340 catgaggtttgaaaggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggc 399 ||||| |||||| |||||||| | |||||||||||| | || ||||| ||||||||||| Sbjct: 1520 catgatgtttgagaggaatgaaagaaccatggcagcaattagaggaggagtgcccaaggc 1461 Query: 400 acttgccacagacaggaacgcagtgaacatcgctccgatgtg 441 || | ||| |||| || ||||||||||| ||||| ||||| Sbjct: 1460 gctggacactgacaaaaatgcagtgaacattgctccaatgtg 1419 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 aaacaattgtacgggtacaaactaaaagaatgg 67 |||||| |||| |||||||||||||||||||| Sbjct: 1846 aaacaaatgtattggtacaaactaaaagaatgg 1814
>dbj|AK061957.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F09, full insert sequence Length = 1506 Score = 226 bits (114), Expect = 5e-56 Identities = 240/282 (85%) Strand = Plus / Minus Query: 160 catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 219 |||||||| || | |||||||||| || | |||||||||||||||||||||||||||||| Sbjct: 1308 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 1249 Query: 220 ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 279 |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| || Sbjct: 1248 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 1189 Query: 280 aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 339 ||||||||| || || |||||||| || || ||||| || ||||| || || || ||||| Sbjct: 1188 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 1129 Query: 340 catgaggtttgaaaggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggc 399 ||||| |||||| |||||||| | |||||||||||| | || ||||| ||||||||||| Sbjct: 1128 catgatgtttgagaggaatgaaagaaccatggcagcaattagaggaggagtgcccaaggc 1069 Query: 400 acttgccacagacaggaacgcagtgaacatcgctccgatgtg 441 || | ||| |||| || ||||||||||| ||||| ||||| Sbjct: 1068 gctggacactgacaaaaatgcagtgaacattgctccaatgtg 1027 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 aaacaattgtacgggtacaaactaaaagaatgg 67 |||||| |||| |||||||||||||||||||| Sbjct: 1454 aaacaaatgtattggtacaaactaaaagaatgg 1422
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 226 bits (114), Expect = 5e-56 Identities = 240/282 (85%) Strand = Plus / Minus Query: 160 catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 219 |||||||| || | |||||||||| || | |||||||||||||||||||||||||||||| Sbjct: 19975587 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 19975528 Query: 220 ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 279 |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| || Sbjct: 19975527 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 19975468 Query: 280 aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 339 ||||||||| || || |||||||| || || ||||| || ||||| || || || ||||| Sbjct: 19975467 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 19975408 Query: 340 catgaggtttgaaaggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggc 399 ||||| |||||| |||||||| | |||||||||||| | || ||||| ||||||||||| Sbjct: 19975407 catgatgtttgagaggaatgaaagaaccatggcagcaattagaggaggagtgcccaaggc 19975348 Query: 400 acttgccacagacaggaacgcagtgaacatcgctccgatgtg 441 || | ||| |||| || ||||||||||| ||||| ||||| Sbjct: 19975347 gctggacactgacaaaaatgcagtgaacattgctccaatgtg 19975306 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 aaacaattgtacgggtacaaactaaaagaatgg 67 |||||| |||| |||||||||||||||||||| Sbjct: 19975733 aaacaaatgtattggtacaaactaaaagaatgg 19975701
>emb|AL713900.4|CNS07YQ0 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 99791 Score = 226 bits (114), Expect = 5e-56 Identities = 240/282 (85%) Strand = Plus / Minus Query: 160 catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 219 |||||||| || | |||||||||| || | |||||||||||||||||||||||||||||| Sbjct: 29535 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 29476 Query: 220 ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 279 |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| || Sbjct: 29475 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 29416 Query: 280 aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 339 ||||||||| || || |||||||| || || ||||| || ||||| || || || ||||| Sbjct: 29415 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 29356 Query: 340 catgaggtttgaaaggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggc 399 ||||| |||||| |||||||| | |||||||||||| | || ||||| ||||||||||| Sbjct: 29355 catgatgtttgagaggaatgaaagaaccatggcagcaattagaggaggagtgcccaaggc 29296 Query: 400 acttgccacagacaggaacgcagtgaacatcgctccgatgtg 441 || | ||| |||| || ||||||||||| ||||| ||||| Sbjct: 29295 gctggacactgacaaaaatgcagtgaacattgctccaatgtg 29254 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 aaacaattgtacgggtacaaactaaaagaatgg 67 |||||| |||| |||||||||||||||||||| Sbjct: 29681 aaacaaatgtattggtacaaactaaaagaatgg 29649
>gb|AY106468.1| Zea mays PCO103506 mRNA sequence Length = 845 Score = 212 bits (107), Expect = 7e-52 Identities = 230/271 (84%) Strand = Plus / Minus Query: 174 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233 ||||||||| || || ||||||||||||||||| || | || |||||||||||||||| Sbjct: 581 ctcaccacagcccgattatcttccaccagaagccgcccaccccgagccagatgatgatgt 522 Query: 234 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293 | ||||||||||||||||| |||||||||||||||| ||||| || ||||| || || | Sbjct: 521 ttacaacggagatgacaaacccatagccccaccactgagccaatgggacatacccggcgc 462 Query: 294 catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353 | ||||||||||| || || || ||||| || ||||| || ||||||||||| || | Sbjct: 461 cgtagaagacgggagcagagccgatgccgtagtgggtggtcccgcccatgaggttcgaga 402 Query: 354 ggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggcacttgccacagaca 413 ||||||| | |||||||||||||||||||| |||||||||| |||||| ||||| |||| Sbjct: 401 ggaatgaaagaaccatggcagcgaaaagcgacggggtgcccagggcactcgccaccgaca 342 Query: 414 ggaacgcagtgaacatcgctccgatgtgtgc 444 ||||||| |||||||| |||||||||||||| Sbjct: 341 ggaacgcggtgaacattgctccgatgtgtgc 311
>dbj|AB112936.1| Zea mays ZmpOMT1 mRNA for plastidic 2-oxoglutarate/malate transporter, complete cds Length = 1907 Score = 204 bits (103), Expect = 2e-49 Identities = 229/271 (84%) Strand = Plus / Minus Query: 174 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233 ||||||||| || || ||||||||||||||||| || | || |||||||||||||||| Sbjct: 1760 ctcaccacagcccgattatcttccaccagaagccgcccaccccgagccagatgatgatgt 1701 Query: 234 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293 | ||||||||||||||||| |||||||||||||||| ||||| || ||||| || || | Sbjct: 1700 ttacaacggagatgacaaacccatagccccaccactgagccaatgggacatacccggcgc 1641 Query: 294 catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353 | ||||||||||| || || || ||||| || ||||| || ||||||||||| || | Sbjct: 1640 cgtagaagacgggagcagagccgatgccgtagtgggtggtcccgcccatgaggttcgaga 1581 Query: 354 ggaatgacataaccatggcagcgaaaagcggaggggtgcccaaggcacttgccacagaca 413 ||||||| | ||||||||||||||| |||| |||||||||| |||||| ||||| |||| Sbjct: 1580 ggaatgaaagaaccatggcagcgaagagcgacggggtgcccagggcactcgccaccgaca 1521 Query: 414 ggaacgcagtgaacatcgctccgatgtgtgc 444 ||||||| |||||||| |||||||||||||| Sbjct: 1520 ggaacgcggtgaacattgctccgatgtgtgc 1490
>emb|BX830891.1|CNS0A0U0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS37ZB03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1880 Score = 71.9 bits (36), Expect = 2e-09 Identities = 147/184 (79%) Strand = Plus / Minus Query: 174 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 1696 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1637 Query: 234 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293 | || | ||||| | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 1636 tgactattgagatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1577 Query: 294 catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353 | ||||||| || || ||||| || ||||||||||||| || ||||| ||||| |||| Sbjct: 1576 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 1517 Query: 354 ggaa 357 |||| Sbjct: 1516 ggaa 1513
>ref|NM_121289.3| Arabidopsis thaliana oxoglutarate:malate antiporter AT5G12860 mRNA, complete cds Length = 1946 Score = 63.9 bits (32), Expect = 4e-07 Identities = 146/184 (79%) Strand = Plus / Minus Query: 174 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 1706 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1647 Query: 234 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293 | || | || || | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 1646 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1587 Query: 294 catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353 | ||||||| || || ||||| || ||||||||||||| || ||||| ||||| |||| Sbjct: 1586 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 1527 Query: 354 ggaa 357 |||| Sbjct: 1526 ggaa 1523
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project) Length = 90020 Score = 63.9 bits (32), Expect = 4e-07 Identities = 146/184 (79%) Strand = Plus / Plus Query: 174 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 11743 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 11802 Query: 234 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293 | || | || || | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 11803 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 11862 Query: 294 catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353 | ||||||| || || ||||| || ||||||||||||| || ||||| ||||| |||| Sbjct: 11863 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 11922 Query: 354 ggaa 357 |||| Sbjct: 11923 ggaa 11926
>gb|AF370494.1|AF370494 Arabidopsis thaliana 2-oxoglutarate/malate translocator precursor-like protein (T24H18.30) mRNA, complete cds Length = 1827 Score = 63.9 bits (32), Expect = 4e-07 Identities = 146/184 (79%) Strand = Plus / Minus Query: 174 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 1628 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1569 Query: 234 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293 | || | || || | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 1568 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1509 Query: 294 catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353 | ||||||| || || ||||| || ||||||||||||| || ||||| ||||| |||| Sbjct: 1508 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 1449 Query: 354 ggaa 357 |||| Sbjct: 1448 ggaa 1445
>emb|BX831984.1|CNS0A12U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH43ZF10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 865 Score = 63.9 bits (32), Expect = 4e-07 Identities = 146/184 (79%) Strand = Plus / Minus Query: 174 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 681 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 622 Query: 234 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293 | || | || || | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 621 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 562 Query: 294 catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353 | ||||||| || || ||||| || ||||||||||||| || ||||| ||||| |||| Sbjct: 561 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 502 Query: 354 ggaa 357 |||| Sbjct: 501 ggaa 498
>emb|BX831708.1|CNS0A15V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH25ZB11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1833 Score = 63.9 bits (32), Expect = 4e-07 Identities = 146/184 (79%) Strand = Plus / Minus Query: 174 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 1694 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1635 Query: 234 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293 | || | || || | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 1634 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1575 Query: 294 catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353 | ||||||| || || ||||| || ||||||||||||| || ||||| ||||| |||| Sbjct: 1574 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 1515 Query: 354 ggaa 357 |||| Sbjct: 1514 ggaa 1511
>emb|BX831583.1|CNS0A162 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH16ZF08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1841 Score = 63.9 bits (32), Expect = 4e-07 Identities = 146/184 (79%) Strand = Plus / Minus Query: 174 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 233 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 1687 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1628 Query: 234 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 293 | || | || || | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 1627 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1568 Query: 294 catagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaaa 353 | ||||||| || || ||||| || ||||||||||||| || ||||| ||||| |||| Sbjct: 1567 cgtagaagataggcgcagacccgataccataatgggtcaatcctcccatcaggttggaaa 1508 Query: 354 ggaa 357 |||| Sbjct: 1507 ggaa 1504
>emb|BX831893.1|CNS0A11L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH37ZF03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1842 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Minus Query: 251 aatccatagccccaccactcagccagcggaacatagcccgctccatagaagacgggggct 310 ||||||||||||||||| | ||||||||| || ||| ||||| ||||||| || || Sbjct: 1669 aatccatagccccaccatttagccagcggcacgtagttagctccgtagaagataggcgca 1610 Query: 311 gaccctatgccataatgggtcaggccacccatgaggtttgaaaggaa 357 ||||| || ||||||||||||| || ||||| ||||| |||||||| Sbjct: 1609 gacccgataccataatgggtcaatcctcccatcaggttggaaaggaa 1563
>emb|BX833869.1|CNS0A0DK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL80ZD02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 769 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Minus Query: 251 aatccatagccccaccactcagccagcggaacatagcccgctccatagaagacgggggct 310 ||||||||||||||||| | ||||||||| || ||| ||||| ||||||| || || Sbjct: 452 aatccatagccccaccatttagccagcggcacgtagttagctccgtagaagataggcgca 393 Query: 311 gaccctatgccataatgggtcaggccacccatgaggtttgaaaggaa 357 ||||| || ||||||||||||| || ||||| ||||| |||||||| Sbjct: 392 gacccgataccataatgggtcaatcctcccatcaggttggaaaggaa 346
>gb|AY279308.1| Malus x domestica oxoglutarate/malate translocator-like mRNA, partial sequence Length = 419 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 293 ccatagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaa 352 |||||||| || || ||||| || ||||| |||||||| || |||||||||||||| || Sbjct: 98 ccatagaaaacaggtgctgatccaatgccgtaatgggtaagaccacccatgaggttggag 39 Query: 353 aggaatg 359 ||||||| Sbjct: 38 aggaatg 32
>dbj|AB190775.1| Mesembryanthemum crystallinum DCT1 mRNA for putative plastidic 2-oxoglutarate/malate translocator, partial cds Length = 1719 Score = 46.1 bits (23), Expect = 0.098 Identities = 56/67 (83%) Strand = Plus / Minus Query: 293 ccatagaagacgggggctgaccctatgccataatgggtcaggccacccatgaggtttgaa 352 |||||||| || |||||||| || || || || ||||| ||||| ||||||||||| || Sbjct: 1163 ccatagaaaactggggctgaaccaataccgtagtgggtaaggccgcccatgaggttggac 1104 Query: 353 aggaatg 359 ||||||| Sbjct: 1103 aggaatg 1097
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 223 gatgatgatgttaacaacggag 244 |||||||||||||||||||||| Sbjct: 5575716 gatgatgatgttaacaacggag 5575695
>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0081K20 Length = 117287 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 223 gatgatgatgttaacaacggag 244 |||||||||||||||||||||| Sbjct: 88801 gatgatgatgttaacaacggag 88780
>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0431A02 Length = 165038 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 223 gatgatgatgttaacaacggag 244 |||||||||||||||||||||| Sbjct: 37408 gatgatgatgttaacaacggag 37387
>gb|AC110090.6| Mus musculus BAC clone RP23-27L4 from chromosome 1, complete sequence Length = 218518 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 gtgcccaaggcacttgccaca 409 ||||||||||||||||||||| Sbjct: 99819 gtgcccaaggcacttgccaca 99839
>gb|AC110607.7| Homo sapiens chromosome 15, clone CTD-2632K10, complete sequence Length = 160452 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 258 agccccaccactcagccagcg 278 ||||||||||||||||||||| Sbjct: 12214 agccccaccactcagccagcg 12194
>gb|AC092891.5| Homo sapiens 12 BAC RP11-495C19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109440 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 ccacaaaccaatcatcttccaccag 202 |||||| |||||||||||||||||| Sbjct: 83801 ccacaatccaatcatcttccaccag 83777
>ref|NM_123924.2| Arabidopsis thaliana lipid binding AT5G45560 mRNA, complete cds Length = 2540 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 actaaaagaatggatcatgt 74 |||||||||||||||||||| Sbjct: 1833 actaaaagaatggatcatgt 1852
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 cgccctcgtcgaaataggaagtcc 157 ||||||||||||||||||| |||| Sbjct: 1443551 cgccctcgtcgaaataggacgtcc 1443528
>gb|AC007861.5| Homo sapiens chromosome 16 clone RP11-189E14, complete sequence Length = 175861 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 407 acagacaggaacgcagtgaacatc 430 |||||||||||| ||||||||||| Sbjct: 43413 acagacaggaactcagtgaacatc 43436
>gb|AC007607.6| Homo sapiens chromosome 16 clone RP11-369H7, complete sequence Length = 158941 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 407 acagacaggaacgcagtgaacatc 430 |||||||||||| ||||||||||| Sbjct: 156047 acagacaggaactcagtgaacatc 156070
>emb|AL603913.14| Mouse DNA sequence from clone RP23-103H9 on chromosome 11 Contains the gene for a novel protein (3732413I11Rik), a novel gene (4930597A21Rik), the 5' end of the Ebf1 gene for early B-cell factor 1, a novel gene and a CpG island, complete sequence Length = 215524 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 ggtgcccaaggcacttgcca 407 |||||||||||||||||||| Sbjct: 57884 ggtgcccaaggcacttgcca 57865
>emb|BX897725.7| Zebrafish DNA sequence from clone CH211-244P18 in linkage group 20 Contains the gene for a novel protein similar to vertebrate delta-like 4 (Drosophila) (DLL4), the vps18 gene for vacuolar protein sorting protein 18, the gene for a novel protein containing an SNF2 family N-terminal domain and a Helicase conserved C-terminal domain, the gene for a novel protein similar to vertebrate ras homolog gene family, member V (RHOV), the gene for a novel protein containing a ChaC-like protein domain and three CpG islands, complete sequence Length = 170125 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccacttgcaaatgttttgct 124 |||||||||||||||||||| Sbjct: 153015 ccacttgcaaatgttttgct 153034
>gb|AE011845.1| Xanthomonas axonopodis pv. citri str. 306, section 223 of 469 of the complete genome Length = 13475 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 catcagataccacttgccag 22 |||||||||||||||||||| Sbjct: 2069 catcagataccacttgccag 2050
>gb|AY064989.1| Arabidopsis thaliana AT5g45560/MFC19_23 mRNA, complete cds Length = 2540 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 actaaaagaatggatcatgt 74 |||||||||||||||||||| Sbjct: 1833 actaaaagaatggatcatgt 1852
>dbj|AB022213.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2N11 Length = 30340 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 actaaaagaatggatcatgt 74 |||||||||||||||||||| Sbjct: 4179 actaaaagaatggatcatgt 4198
>gb|AC006499.13|AC006499 Homo sapiens chromosome 4 clone C0494H11, complete sequence Length = 195384 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cagaagcctccagcaccaag 219 |||||||||||||||||||| Sbjct: 26195 cagaagcctccagcaccaag 26214
>emb|AL929049.4| Zebrafish DNA sequence from clone DKEY-14A13 in linkage group 20, complete sequence Length = 223182 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccacttgcaaatgttttgct 124 |||||||||||||||||||| Sbjct: 160254 ccacttgcaaatgttttgct 160273 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,609,586 Number of Sequences: 3902068 Number of extensions: 3609586 Number of successful extensions: 66907 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66777 Number of HSP's gapped (non-prelim): 127 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)