>PCDA9_PANTR (Q5DRE3) Protocadherin alpha 9 precursor (PCDH-alpha9)|
          Length = 950

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
 Frame = +3

Query: 54  PQLTRVYIHIYMYMQLCTV---LVYTSI*YTIIQCLSAAP 164
           P++T V +++Y+ + +C V   LV T + YT+++C SA P
Sbjct: 689 PEVTLVDVNVYLIIAICAVSSLLVLTLLLYTVLRC-SAMP 727

>PCDA9_HUMAN (Q9Y5H5) Protocadherin alpha 9 precursor (PCDH-alpha9)|
          Length = 950

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
 Frame = +3

Query: 54  PQLTRVYIHIYMYMQLCTV---LVYTSI*YTIIQCLSAAP 164
           P++T V +++Y+ + +C V   LV T + YT+++C SA P
Sbjct: 689 PEVTLVDVNVYLIIAICAVSSLLVLTLLLYTVLRC-SAMP 727

>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3|
          Length = 465

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -1

Query: 271 SYVWMPEGAPHQGKFVYGICYVACV---IYVCMAG*LRCGAADKHCIIVYQILVYTSTVH 101
           S+  +P+   +    +  +C   CV   +YVCM         +  C  VY  ++ ++ V 
Sbjct: 354 SFQSVPQACWYLCSILSSVCVCVCVCVCMYVCMC------VMESAC--VYVCVMESACVC 405

Query: 100 NCIYIYICMYTRV 62
            C+ +Y+C+Y+ V
Sbjct: 406 VCMCVYVCVYSGV 418

>EFTS_SYMTH (Q67PB6) Elongation factor Ts (EF-Ts)|
          Length = 304

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 89  VYAIMHGTSIY*YLIHNYTMFVRSSTPKLASHAYIDYTCHITYSVYELTLMRCTLRHPYI 268
           V+A +HG      LI      + ++TP++A+H  ++  CH      EL L   ++R  Y+
Sbjct: 148 VHAYIHGDGRVGVLIE-----LTTATPEVAAHPEVEALCH------ELALQIASMRAQYV 196

Query: 269 R 271
           R
Sbjct: 197 R 197

>RPOA_EAVBU (P19811) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
           Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1
           papain-like cysteine proteinase (EC 3.4.22.-) (PCP);
           Nsp2 cysteine proteinase (EC 3.4.22.-) (CP2) (CP);
           Nonstructural protein
          Length = 3175

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 235 GKFVYGICYVACVI---YVCMAG*LRCGAADKHCIIVYQILVYTSTVHNC 95
           G ++YGICY   V+   + C+      G  D  C  V+ + V T T  +C
Sbjct: 831 GGWIYGICYFVLVVVSTFTCLPIKCGIGTRDPFCRRVFSVPV-TKTQEHC 879

>ARN_BPT4 (P39510) Anti-restriction endonuclease (Anti-rgl nuclease)|
          Length = 92

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 136 QLYNVCPQLHTEVSQPCIHRLHMPHNIFRIRTYLD 240
           +LY   P L+  +    +  LH+ +N F I TY D
Sbjct: 20  KLYKFLPNLYHSIVNELVEELHLENNDFLIGTYKD 54

>KCMB2_RAT (Q811Q0) Calcium-activated potassium channel beta subunit 2|
           (Calcium-activated potassium channel, subfamily M, beta
           subunit 2) (Maxi K channel beta subunit 2) (BK channel
           beta subunit 2) (Slo-beta 2) (K(VCA)beta 2)
           (Charybdotoxin receptor beta
          Length = 235

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -2

Query: 372 QARAVLLSVPFIIRSIHCNHHLHPHACGSDVYLLRMYGCLRVHRIKVSSYTEYVMWH 202
           +A+  LL+V  I  + +C+      +CG D + L  Y CL+V+    SS  + +++H
Sbjct: 81  EAQRALLNVS-ITETFNCSF-----SCGPDCWKLSQYPCLQVYVNLTSSGEKLLLYH 131

>KCMB2_MOUSE (Q9CZM9) Calcium-activated potassium channel beta subunit 2|
           (Calcium-activated potassium channel, subfamily M, beta
           subunit 2) (Maxi K channel beta subunit 2) (BK channel
           beta subunit 2) (Slo-beta 2) (K(VCA)beta 2)
           (Charybdotoxin receptor bet
          Length = 235

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -2

Query: 372 QARAVLLSVPFIIRSIHCNHHLHPHACGSDVYLLRMYGCLRVHRIKVSSYTEYVMWH 202
           +A+  LL+V  I  + +C+      +CG D + L  Y CL+V+    SS    +++H
Sbjct: 81  EAQCALLNVS-ITETFNCSF-----SCGPDCWKLSQYPCLQVYVNLTSSGERLLLYH 131

>HUNB_SCICO (Q01790) Protein hunchback (Fragment)|
          Length = 50

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 28  LKRMLHTQHHNSHVYTYIYICI-CNYA 105
           + R + T H  SH  TY Y C+ CNYA
Sbjct: 21  VNRSMLTSHMKSHSNTYPYRCLDCNYA 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,621,944
Number of Sequences: 219361
Number of extensions: 1280746
Number of successful extensions: 3078
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3076
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)