>ref|XM_473863.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 465

 Score =  105 bits (53), Expect = 1e-19
 Identities = 91/104 (87%)
 Strand = Plus / Minus

                                                                       
Query: 336 ttatgaagggcactgaaaggaggacggcacgtgcttgccgcactggttgacgagcaccga 395
           |||||| |||||||| |||  ||| || |||||||||||||||| |||||||||||| ||
Sbjct: 465 ttatgatgggcactggaagctggaggggacgtgcttgccgcactcgttgacgagcacgga 406

                                                       
Query: 396 gatggcgacggngagcacgaggctgacgttgagcgccttggcct 439
           |||||| |||| ||| ||||||||||||  ||||||||||||||
Sbjct: 405 gatggcaacggggaggacgaggctgacgccgagcgccttggcct 362

>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score =  105 bits (53), Expect = 1e-19
 Identities = 91/104 (87%)
 Strand = Plus / Minus

                                                                         
Query: 336   ttatgaagggcactgaaaggaggacggcacgtgcttgccgcactggttgacgagcaccga 395
             |||||| |||||||| |||  ||| || |||||||||||||||| |||||||||||| ||
Sbjct: 78196 ttatgatgggcactggaagctggaggggacgtgcttgccgcactcgttgacgagcacgga 78137

                                                         
Query: 396   gatggcgacggngagcacgaggctgacgttgagcgccttggcct 439
             |||||| |||| ||| ||||||||||||  ||||||||||||||
Sbjct: 78136 gatggcaacggggaggacgaggctgacgccgagcgccttggcct 78093



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                         
Query: 343   gggcactgaaaggaggacggcacgtgcttgccgcactggttgacgagcaccgagatggcg 402
             |||||||| |||  ||| ||||||| ||||||||| |  ||||||||||| |||||||||
Sbjct: 67770 gggcactggaagtcggagggcacgtacttgccgcagtcattgacgagcacggagatggcg 67711

                                                  
Query: 403   acggngagcacgaggctgacgttgagcgccttggcct 439
             |||| ||| |||||||||| |  ||||||||||||||
Sbjct: 67710 acggggaggacgaggctgaggccgagcgccttggcct 67674

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  105 bits (53), Expect = 1e-19
 Identities = 91/104 (87%)
 Strand = Plus / Minus

                                                                            
Query: 336      ttatgaagggcactgaaaggaggacggcacgtgcttgccgcactggttgacgagcaccga 395
                |||||| |||||||| |||  ||| || |||||||||||||||| |||||||||||| ||
Sbjct: 31096115 ttatgatgggcactggaagctggaggggacgtgcttgccgcactcgttgacgagcacgga 31096056

                                                            
Query: 396      gatggcgacggngagcacgaggctgacgttgagcgccttggcct 439
                |||||| |||| ||| ||||||||||||  ||||||||||||||
Sbjct: 31096055 gatggcaacggggaggacgaggctgacgccgagcgccttggcct 31096012



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                            
Query: 343      gggcactgaaaggaggacggcacgtgcttgccgcactggttgacgagcaccgagatggcg 402
                |||||||| |||  ||| ||||||| ||||||||| |  ||||||||||| |||||||||
Sbjct: 31085689 gggcactggaagtcggagggcacgtacttgccgcagtcattgacgagcacggagatggcg 31085630

                                                     
Query: 403      acggngagcacgaggctgacgttgagcgccttggcct 439
                |||| ||| |||||||||| |  ||||||||||||||
Sbjct: 31085629 acggggaggacgaggctgaggccgagcgccttggcct 31085593

>dbj|AK062781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B03, full
           insert sequence
          Length = 713

 Score =  105 bits (53), Expect = 1e-19
 Identities = 91/104 (87%)
 Strand = Plus / Minus

                                                                       
Query: 336 ttatgaagggcactgaaaggaggacggcacgtgcttgccgcactggttgacgagcaccga 395
           |||||| |||||||| |||  ||| || |||||||||||||||| |||||||||||| ||
Sbjct: 325 ttatgatgggcactggaagctggaggggacgtgcttgccgcactcgttgacgagcacgga 266

                                                       
Query: 396 gatggcgacggngagcacgaggctgacgttgagcgccttggcct 439
           |||||| |||| ||| ||||||||||||  ||||||||||||||
Sbjct: 265 gatggcaacggggaggacgaggctgacgccgagcgccttggcct 222

>ref|XM_473862.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 609

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                       
Query: 343 gggcactgaaaggaggacggcacgtgcttgccgcactggttgacgagcaccgagatggcg 402
           |||||||| |||  ||| ||||||| ||||||||| |  ||||||||||| |||||||||
Sbjct: 584 gggcactggaagtcggagggcacgtacttgccgcagtcattgacgagcacggagatggcg 525

                                                
Query: 403 acggngagcacgaggctgacgttgagcgccttggcct 439
           |||| ||| |||||||||| |  ||||||||||||||
Sbjct: 524 acggggaggacgaggctgaggccgagcgccttggcct 488

>gb|U73214.1|TAU73214 Triticum aestivum cold acclimation protein WCOR518 (Wcor518) mRNA,
           parial cds
          Length = 1168

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 369 cttgccgcactggttgacgagcaccgagatggcgacggngagcacgaggctgacgttgag 428
           |||||||||||||||||| ||||    |||||||| ||  ||||||||| ||| ||||||
Sbjct: 916 cttgccgcactggttgaccagcagatcgatggcgatgggcagcacgaggttgatgttgag 857

                  
Query: 429 cgccttg 435
           |||||||
Sbjct: 856 cgccttg 850



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 369 cttgccgcactggttgacgagcaccgagatggcgacggngagcacgaggctgacgttgag 428
           ||||||||| |||||||||||||||  ||||||||  |  ||||||||| ||| ||||||
Sbjct: 475 cttgccgcattggttgacgagcacctggatggcgattggcagcacgaggttgatgttgag 416

                  
Query: 429 cgccttg 435
            ||||||
Sbjct: 415 tgccttg 409

>dbj|AK062295.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F05, full
           insert sequence
          Length = 570

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 394 gagatggcgacggngagcacgaggctgacgttgagcgccttggcct 439
           |||||||| |||| ||| ||||||||||||  || |||||||||||
Sbjct: 183 gagatggcaacggggaggacgaggctgacgccgaacgccttggcct 138

>gb|AC151426.32| Medicago truncatula clone mth2-6o22, complete sequence
          Length = 116955

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 131   atacacaattatacaatgtttg 152
             ||||||||||||||||||||||
Sbjct: 35786 atacacaattatacaatgtttg 35765

>gb|AC104266.7| Homo sapiens chromosome 15, clone CTD-3217P20, complete sequence
          Length = 88425

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   acacatgccacataacatatt 218
             |||||||||||||||||||||
Sbjct: 11439 acacatgccacataacatatt 11419

>gb|AC021316.16| Homo sapiens chromosome 15, clone RP11-11J16, complete sequence
          Length = 173535

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 198  acacatgccacataacatatt 218
            |||||||||||||||||||||
Sbjct: 7211 acacatgccacataacatatt 7231

>gb|AC007319.2| Homo sapiens BAC clone RP11-432D12 from 2, complete sequence
          Length = 192334

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 179   agccatgcatacatagattacacat 203
             |||||| ||||||||||||||||||
Sbjct: 84180 agccattcatacatagattacacat 84156

>emb|BX088693.15| Zebrafish DNA sequence from clone CH211-212E22 in linkage group 2,
             complete sequence
          Length = 150021

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   atacacaattatacaatgtt 150
             ||||||||||||||||||||
Sbjct: 97093 atacacaattatacaatgtt 97074

>emb|CR956364.13| Pig DNA sequence from clone PigI-52G3 on chromosome 7, complete
             sequence
          Length = 105198

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   gcatgcatgaggatgcaggt 311
             ||||||||||||||||||||
Sbjct: 66821 gcatgcatgaggatgcaggt 66802

>gb|AC091849.2| Homo sapiens chromosome 5 clone CTD-2245E15, complete sequence
          Length = 131371

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                  
Query: 321    aatggatggagcggattatgaagggcactgaaagga 356
              ||||||||| |||||| ||||||| |||||||||||
Sbjct: 122354 aatggatggtgcggat-atgaaggtcactgaaagga 122320

>gb|AC026748.7| Homo sapiens chromosome 5 clone RP11-325I22, complete sequence
          Length = 191795

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                 
Query: 321   aatggatggagcggattatgaagggcactgaaagga 356
             ||||||||| |||||| ||||||| |||||||||||
Sbjct: 18010 aatggatggtgcggat-atgaaggtcactgaaagga 17976

>ref|XM_651692.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (8.t00058) partial mRNA
          Length = 3384

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 caggtggtggttgcaatgga 326
           ||||||||||||||||||||
Sbjct: 166 caggtggtggttgcaatgga 147

>gb|AC091505.2| Sus scrofa clone RP44-331G21, complete sequence
          Length = 188095

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    gcatgcatgaggatgcaggt 311
              ||||||||||||||||||||
Sbjct: 153876 gcatgcatgaggatgcaggt 153895

>emb|AL360215.15| Human DNA sequence from clone RP11-535D18 on chromosome 6 Contains a
             CpG island, complete sequence
          Length = 106582

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   attatgaagggcactgaaag 354
             ||||||||||||||||||||
Sbjct: 44466 attatgaagggcactgaaag 44447

>emb|CR388046.14| Zebrafish DNA sequence from clone DKEY-50E6 in linkage group 7, complete
              sequence
          Length = 211210

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tcactttatattgttcataa 24
              ||||||||||||||||||||
Sbjct: 185468 tcactttatattgttcataa 185449

>emb|CR382379.6| Zebrafish DNA sequence from clone DKEY-175N5 in linkage group 7, complete
              sequence
          Length = 159548

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      tcactttatattgttcataa 24
              ||||||||||||||||||||
Sbjct: 100812 tcactttatattgttcataa 100831

>gb|AC027237.8| Homo sapiens chromosome 15, clone RP11-253M7, complete sequence
          Length = 157448

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    aggaggacggcacgtgcttg 372
              ||||||||||||||||||||
Sbjct: 122548 aggaggacggcacgtgcttg 122567

>emb|AL954641.12| Zebrafish DNA sequence from clone CH211-278J9 in linkage group 2,
              complete sequence
          Length = 167140

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    atacacaattatacaatgtt 150
              ||||||||||||||||||||
Sbjct: 166022 atacacaattatacaatgtt 166041

>emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chromosome 2, complete
             sequence
          Length = 187043

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 309   ggtggtggttgcaatggatggagc 332
             |||||||||||||| |||||||||
Sbjct: 84868 ggtggtggttgcaagggatggagc 84845


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,516,987
Number of Sequences: 3902068
Number of extensions: 2516987
Number of successful extensions: 45630
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 45574
Number of HSP's gapped (non-prelim): 57
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)