Clone Information

BLAST Search Result

Clone Name	rbaet112e10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CDON_RAT (O35158) Cell adhesion molecule-related/down-regulated ...	32	0.38
2	SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dep...	30	1.1
3	SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dep...	30	1.1
4	ROR1_MOUSE (Q9Z139) Tyrosine-protein kinase transmembrane recept...	30	1.5
5	CIC_MOUSE (Q924A2) Protein capicua homolog	30	1.5
6	MUC13_RAT (P97881) Mucin-13 precursor	30	1.9
7	LEUK_MOUSE (P15702) Leukosialin precursor (Leucocyte sialoglycop...	30	1.9
8	YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear pro...	29	2.5
9	MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)	29	2.5
10	HLES_DROME (Q02308) Protein hairless	29	2.5
11	RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembra...	29	2.5
12	CAPU_DROME (Q24120) Protein cappuccino	29	3.3
13	NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleo...	29	3.3
14	NR1D1_HUMAN (P20393) Orphan nuclear receptor NR1D1 (V-erbA-relat...	29	3.3
15	BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle pr...	29	3.3
16	NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alph...	29	3.3
17	CDON_MOUSE (Q32MD9) Cell adhesion molecule-related/down-regulate...	29	3.3
18	RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated pro...	28	4.3
19	RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated p...	28	4.3
20	RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated p...	28	4.3
21	SED1_YEAST (Q01589) Protein SED1 precursor	28	5.6
22	MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac...	28	5.6
23	NLGN2_RAT (Q62888) Neuroligin-2 precursor	28	5.6
24	NGLN2_MOUSE (Q69ZK9) Neuroligin-2 precursor	28	5.6
25	PRB2_HUMAN (P02812) Basic salivary proline-rich protein 2 (Saliv...	28	5.6
26	ITCH_MOUSE (Q8C863) Itchy E3 ubiquitin protein ligase (EC 6.3.2.-)	28	5.6
27	SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3....	28	7.3
28	MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synth...	28	7.3
29	HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)	28	7.3
30	DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re...	28	7.3
31	ATG1_USTMA (Q4P0K0) Serine/threonine-protein kinase ATG1 (EC 2.7...	28	7.3
32	LGE1_ASHGO (Q75A59) Transcriptional regulatory protein LGE1	28	7.3
33	BYN_DROME (P55965) T-related protein (Trp) (Protein brachyenteron)	28	7.3
34	CDON_HUMAN (Q4KMG0) Cell adhesion molecule-related/down-regulate...	28	7.3
35	GLO2_CALJA (Q28333) Hydroxyacylglutathione hydrolase (EC 3.1.2.6...	27	9.5
36	PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precur...	27	9.5
37	NFRKB_MOUSE (Q6PIJ4) Nuclear factor related to kappa-B-binding p...	27	9.5
38	YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear pro...	27	9.5
39	MURB_CAUCR (Q9A5A7) UDP-N-acetylenolpyruvoylglucosamine reductas...	27	9.5
40	CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor	27	9.5
41	TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA ...	27	9.5
42	PXK_HUMAN (Q7Z7A4) PX domain-containing protein kinase-like prot...	27	9.5
43	VL2_HPV41 (P27558) Minor capsid protein L2	27	9.5

>CDON_RAT (O35158) Cell adhesion molecule-related/down-regulated by oncogenes|
            precursor
          Length = 1256

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 342  PGSARTPPTKLSSPPALRGNGTNGTTASLPPASS 241
            PG++  P  +LS+PP+  GNG N   A+ P  SS
Sbjct: 926  PGASEYPMKELSTPPSSSGNGGNVGPATSPARSS 959

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>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 345  PPGSARTPPTKLSSPPALRGNGT-NGTTASLPPASSS 238
            PPGS   PPT  + PP + G        AS PP S +
Sbjct: 966  PPGSQPIPPTGAAGPPTVHGLAVPPAAVASAPPGSGA 1002

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>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 345  PPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSWAKGT 223
            PPGS   PPT  + PPA+ G      +    PA S    G+
Sbjct: 966  PPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGS 1006

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>ROR1_MOUSE (Q9Z139) Tyrosine-protein kinase transmembrane receptor ROR1|
           precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase,
           receptor-related 1) (mROR1)
          Length = 937

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 348 EPPGSART----PPTKLSSPPALRGNGTNGTTASLPPASSS 238
           +P G  R     PP K  SP + RG+ + G  ASLP + S+
Sbjct: 837 QPAGPPRVIQHCPPPKSRSPSSARGSTSTGHVASLPSSGSN 877

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>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = -3

Query: 351  PEPPGSART-PPTKLSSP----PALRGNGTNG--TTASLPPASSSW 235
            P PP    T PPT  SSP    PA    GT G  T +  P +SS W
Sbjct: 1227 PAPPPPTETWPPTARSSPPPPLPAEERPGTKGPETASKFPSSSSDW 1272

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>MUC13_RAT (P97881) Mucin-13 precursor|
          Length = 547

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 348 EPPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSWAKGTS 220
           +PPG A TP T ++ P     + T+GTT     ASSS    +S
Sbjct: 165 QPPGGASTPTTTVTQPTG-SSSQTSGTTQPPGGASSSTVTSSS 206

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>LEUK_MOUSE (P15702) Leukosialin precursor (Leucocyte sialoglycoprotein)|
           (Sialophorin) (Ly-48) (B cell differentiation antigen
           LP-3) (CD43 antigen)
          Length = 395

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
 Frame = -3

Query: 342 PGSARTPPTKLSSPPALRGNGTNG----------TTASLPPASSSWAKGTSVGWR 208
           P  A T  +K S PP     G+ G          TTA+    SSS A+GTSV  R
Sbjct: 172 PSVATTVSSKTSGPPVTTATGSLGPSSEMHGLPATTATSSVESSSVARGTSVSSR 226

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>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
           (ZAP113)
          Length = 1951

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 351 PEPPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSS 238
           P P   A TPP  +  P   +G     T A +PPASSS
Sbjct: 425 PPPHIQATTPPPGIPPPGVPQGIPPQLTAAPVPPASSS 462

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>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 351  PEPPGSARTPPTKLSSPPALRGNGTNGTTASLPPASS 241
            P PP +  +PPT   SPP         TT   PP ++
Sbjct: 1470 PSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTT 1506



 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 345  PPGSARTPPTKLSSPPALRGNGTNGTTASLPPASS 241
            PP +  +PPT   SPP    +    TT + PP ++
Sbjct: 1465 PPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTT 1499



 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 351  PEPPGSART--PPTKLSSPPALRGNGTNGTTASLPPASS 241
            P PP +  T  PPT   SPP         +T +LPP ++
Sbjct: 1484 PSPPTTTTTTPPPTTTPSPPMTTPITPPASTTTLPPTTT 1522

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>HLES_DROME (Q02308) Protein hairless|
          Length = 1077

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 303 PPALRGNGTNGTTASLPPASSSWA 232
           PP + GNG+ G+  S PP S+S A
Sbjct: 856 PPQVNGNGSAGSPTSAPPTSNSSA 879

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>RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembrane protein 7)|
          Length = 474

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 345 PPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSWAKGTSVGWR 208
           PP S+  PPT    PP    +    T++ +PP SSS     S  WR
Sbjct: 363 PPTSSYVPPTSSYVPPT--SSYVPPTSSYVPPTSSSVIVPISSSWR 406

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>CAPU_DROME (Q24120) Protein cappuccino|
          Length = 1059

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = -3

Query: 351 PEPPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSWAKGT 223
           P PPGS   PP     PP     G  G     PP S+S +K T
Sbjct: 525 PPPPGSGSAPP----PPPPAPIEGGGGIPPPPPPMSASPSKTT 563

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>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
           (214 kDa nucleoporin) (CAN protein)
          Length = 2090

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 351 PEPPGSARTPPTKLSSPPALRGNGTNGTTASLPPAS 244
           P+ PGS  T PT   +P  L  +      ASLPP+S
Sbjct: 428 PKSPGSTPTTPTSSQAPQKLDASAA-AAPASLPPSS 462

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>NR1D1_HUMAN (P20393) Orphan nuclear receptor NR1D1 (V-erbA-related protein|
           EAR-1) (Rev-erbA-alpha)
          Length = 614

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 351 PEPPGSARTPPTKL--SSPPALRGNGTNGTTASLPPASSSWAKGTSVG 214
           P P GS    P +   S PP+L  +G+  +++S   +SSS+  G+  G
Sbjct: 54  PSPTGSLTQDPARSFGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPG 101

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>BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle protein 1)|
          Length = 963

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 351 PEPPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSWAKGTS 220
           P  PG  R PPT+  +PP      T   +  +PP S    + T+
Sbjct: 303 PPVPGQQRVPPTQTRNPP--NPTNTRQPSRPVPPTSDGHIEATT 344

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>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,|
           muscle-specific form (Alpha-NAC, muscle-specific form)
          Length = 2187

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 336 SARTPPTKLSSPPALRGNGTNGTTASLPP 250
           S+  PP  L+SPP+  G      TAS+PP
Sbjct: 146 SSVCPPHPLTSPPSAAGAELGALTASIPP 174

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>CDON_MOUSE (Q32MD9) Cell adhesion molecule-related/down-regulated by oncogenes|
            precursor
          Length = 1250

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 342  PGSARTPPTKLSSPPALRGNGTNGTTASLPPASS 241
            PG++  P  +LS+PP+  GN  N   A+ P  SS
Sbjct: 925  PGASDYPVKELSTPPSSSGNAGNVGPATSPARSS 958

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>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
          Length = 240

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 351 PEPPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSWAKGTSVG 214
           P P G A  PP  ++ PP +R     G    LPP     A+GT +G
Sbjct: 176 PPPVGRATPPPGIMAPPPGMR--PPMGPPIGLPP-----ARGTPIG 214

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>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
           (Tissue-specific splicing protein)
          Length = 240

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 351 PEPPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSWAKGTSVG 214
           P P G A  PP  ++ PP +R     G    LPP     A+GT +G
Sbjct: 176 PPPVGRATPPPGIMAPPPGMR--PPMGPPIGLPP-----ARGTPIG 214

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>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
           (Tissue-specific splicing protein)
          Length = 240

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 351 PEPPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSWAKGTSVG 214
           P P G A  PP  ++ PP +R     G    LPP     A+GT +G
Sbjct: 176 PPPVGRATPPPGIMAPPPGMR--PPMGPPIGLPP-----ARGTPIG 214

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>SED1_YEAST (Q01589) Protein SED1 precursor|
          Length = 338

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 339 GSARTPPTKLSSPPALRGNGTNGTTASLPPASS 241
           G++   PT  ++     G  TNGTT++ PP +S
Sbjct: 115 GTSTEAPTDTTTEAPTTGLPTNGTTSAFPPTTS 147

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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 342  PGSARTPPTKLSSPPALRGNGTNGTTASLP 253
            PG+ARTPP  +S+      +G+  T +S+P
Sbjct: 3823 PGTARTPPVWISTTTTPTTSGSTVTPSSIP 3852

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>NLGN2_RAT (Q62888) Neuroligin-2 precursor|
          Length = 836

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 336 SARTPPTKLSSPPALRGNGTNGTTASLPPAS 244
           + R PP     PP   G GT+GT    PPA+
Sbjct: 619 TTRLPPYATRWPPRTPGPGTSGTRRPPPPAT 649

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>NGLN2_MOUSE (Q69ZK9) Neuroligin-2 precursor|
          Length = 836

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 336 SARTPPTKLSSPPALRGNGTNGTTASLPPAS 244
           + R PP     PP   G GT+GT    PPA+
Sbjct: 619 TTRLPPYATRWPPRTPGPGTSGTRRPPPPAT 649

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>PRB2_HUMAN (P02812) Basic salivary proline-rich protein 2 (Salivary|
           proline-rich protein) (Con1 glycoprotein) [Contains:
           Basic peptide P-F] (Fragment)
          Length = 382

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
 Frame = -3

Query: 351 PEPPG-----SARTPPTKLSSPPALRGNGTNGTTASLPPASSS 238
           P P G     SAR+PP K   PP   GN   G     PPA  +
Sbjct: 314 PPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPP---PPAGGN 353

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>ITCH_MOUSE (Q8C863) Itchy E3 ubiquitin protein ligase (EC 6.3.2.-)|
          Length = 864

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 351 PEPPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSWAKGTSVG 214
           P PP   R  P  ++  P+   +    +T SLPP +++    TS G
Sbjct: 218 PPPPTPRR--PASVNGSPSTNSDSDGSSTGSLPPTNTNVNTSTSEG 261

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>SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3.2.-) (Smad|
           ubiquitination regulatory factor 1 homolog) (DSmurf)
           (Lethal with a checkpoint kinase protein)
          Length = 1061

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 345 PPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSWAKGTSVGWR 208
           PP  +++PPT   SPPA      NG   S  P ++S   G+  G R
Sbjct: 403 PPRHSQSPPTPNISPPASVTPSANGNVHS--PNANSTPAGSGGGSR 446

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>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5|
           protein)
          Length = 476

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
 Frame = -3

Query: 351 PEPPG-----SARTPPTKLSSPPALRGNGTNGTTASLPP 250
           P PPG     S+  PP  LS PP    N  N      PP
Sbjct: 430 PPPPGMTTVQSSIAPPPGLSGPPGFSNNMGNDINKPTPP 468

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>HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)|
          Length = 443

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 351 PEPPGSARTPPTKLSSPPALRGNGTNGTTASLPPASS 241
           P P  +A  PP+ +S P +   N T  +TA  P  +S
Sbjct: 113 PAPTPAAPPPPSSVSPPQSANSNPTPASTAKSPLLNS 149

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>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
 Frame = -3

Query: 351 PEPPGSARTPP----TKLSSPPALRGNGTNGTTASLP-----PASSSWAKGTSV 217
           P PP     PP    T +S PP L G+ T      LP     P+ SS   GT++
Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGGTAI 654

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>ATG1_USTMA (Q4P0K0) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)|
           (Autophagy-related protein 1)
          Length = 990

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -3

Query: 351 PEPPGSA--RTPPTKLSSPPALRGNGTNGTTA---SLPPAS 244
           P  PG++    PPT LSS P    N TN  +    +LPP S
Sbjct: 550 PSAPGASPPTAPPTILSSKPIRIANNTNTASTGAFALPPGS 590

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>LGE1_ASHGO (Q75A59) Transcriptional regulatory protein LGE1|
          Length = 244

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = -3

Query: 351 PEPPGSARTPPTKLSSPPALRGNGT-----NGTTASLPPASSSWAKGT-SVGWR 208
           P PP     PP+  S+PP+ +G        NG   S  P S  +A+   S G+R
Sbjct: 16  PPPPPPPPPPPSHSSAPPSSQGGSARAAPLNGAFHSHQPHSQGYARAEGSNGYR 69

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>BYN_DROME (P55965) T-related protein (Trp) (Protein brachyenteron)|
          Length = 697

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 345 PPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSWAKGTSVGWRC 205
           PP         +++PP L    ++G  AS P  SS+ + G S G  C
Sbjct: 285 PPTHYTAAAAAVAAPPPLSIAQSHGLVASCPSVSSAESVGPSSGGSC 331

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>CDON_HUMAN (Q4KMG0) Cell adhesion molecule-related/down-regulated by oncogenes|
            precursor
          Length = 1287

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 342  PGSARTPPTKLSSPPALRGNGTNGTTASLPPASS 241
            PG++  P   LS+PP   G+G N   A+ P  SS
Sbjct: 929  PGASEYPVKDLSTPPNSLGSGGNVGPATSPARSS 962

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>GLO2_CALJA (Q28333) Hydroxyacylglutathione hydrolase (EC 3.1.2.6) (Glyoxalase|
           II) (Glx II) (Germ cell-specific protein)
          Length = 260

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 242 DDAGGNDAVVPLVPLPRSAGGDDSFVGGV 328
           D AGGN+ +V L P  +  GGDD  +GG+
Sbjct: 58  DHAGGNEKLVKLEPGLKVYGGDDR-IGGL 85

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>PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precursor (Salivary|
           proline-rich protein) [Contains: Basic peptide IB-6;
           Peptide P-H]
          Length = 392

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 14/52 (26%)
 Frame = -3

Query: 351 PEPPG--------------SARTPPTKLSSPPALRGNGTNGTTASLPPASSS 238
           P PPG              SAR PP K   PP   GN   G     PPA  +
Sbjct: 315 PPPPGKPQGPPAQGGSKSQSARAPPGKPQGPPQQEGNNPQGPP---PPAGGN 363

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>NFRKB_MOUSE (Q6PIJ4) Nuclear factor related to kappa-B-binding protein|
           (DNA-binding protein R kappa-B)
          Length = 1296

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 351 PEPPGSARTP--PTKLSSPPALRGNGTNGTTASLPPASSS 238
           P  P +  TP  PT +S PP    N +  +T S P  SSS
Sbjct: 717 PVTPVTPTTPALPTPISPPPVSAVNRSGSSTVSEPAQSSS 756

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>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 345 PPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSW 235
           PP     PP  ++ P A  G G + +TA   P+SS +
Sbjct: 15  PPPPVPPPPPPVALPEASPGPGYSSSTAPAAPSSSGF 51

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>MURB_CAUCR (Q9A5A7) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 301

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 279 TNGTTASLPPASSSWAKGTSVGWR 208
           T G+T   PP  SSW      GWR
Sbjct: 220 TGGSTFKNPPGHSSWKLVDEAGWR 243

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>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor|
          Length = 1690

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -3

Query: 351 PEPPGSARTPPTKLSSPPALRG-NGTNGTTASLPP 250
           P PPG   TPP  L  PP   G  G  G T  + P
Sbjct: 352 PGPPGVLVTPPLPLKGPPGDPGFPGRYGETGDVGP 386

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>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding|
           protein-associated factor 2S) (Transcription factor
           CA150)
          Length = 1098

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 345 PPGSARTPPTKLSSPPALRGNGTNGTTASLPPASSSWAK 229
           PP S+  PP  +  PP +      GT A LPP    W +
Sbjct: 102 PPMSSMPPPPGMMFPPGMPPVTAPGTPA-LPPTEEIWVE 139

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>PXK_HUMAN (Q7Z7A4) PX domain-containing protein kinase-like protein|
           (Modulator of Na,K-ATPase) (MONaKA)
          Length = 578

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 351 PEPPGSARTPPTKLSSPPALRGNGTNG-TTASLPPASSSWAKGT 223
           P PP +A  PP    +P  L     NG +  +L  +  ++ KGT
Sbjct: 520 PPPPPAAPLPPASTEAPAQLSSQAVNGMSRGALLSSIQNFQKGT 563

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>VL2_HPV41 (P27558) Minor capsid protein L2|
          Length = 554

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 254 GNDAVVPLVPLPRSAGGDD 310
           GND VV ++ +P  AGGDD
Sbjct: 459 GNDEVVDIMTIPIRAGGDD 477


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,552,426
Number of Sequences: 219361
Number of extensions: 755605
Number of successful extensions: 3543
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 3040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3515
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result