| Clone Name | rbaet112e08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF153823.1|AF153823 Festuca arundinacea comt1a caffeic acid O-methyltransferase mRNA, complete cds Length = 1446 Score = 46.1 bits (23), Expect = 0.042 Identities = 50/59 (84%) Strand = Plus / Minus Query: 51 tggaactccctctggctcctctccctgccggctggtgtgtgcatgagcatgatcatgtc 109 ||||||||||||| | ||||||||||||| | || ||||| ||||||||||||||| Sbjct: 1042 tggaactccctctcgtacctctccctgccgccggggttgtgcgcgagcatgatcatgtc 984
>gb|AF033540.1|AF033540 Lolium perenne caffeic acid O-methyltransferase (OMT3) mRNA, complete cds Length = 1436 Score = 46.1 bits (23), Expect = 0.042 Identities = 47/55 (85%) Strand = Plus / Minus Query: 55 actccctctggctcctctccctgccggctggtgtgtgcatgagcatgatcatgtc 109 ||||||||| | ||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 1082 actccctctcgtacctctccctgccgcctgggttgtgcgcgagcatgatcatgtc 1028
>gb|AF033538.1|AF033538 Lolium perenne caffeic acid O-methyltransferase (OMT1) mRNA, complete cds Length = 1455 Score = 46.1 bits (23), Expect = 0.042 Identities = 50/59 (84%) Strand = Plus / Minus Query: 51 tggaactccctctggctcctctccctgccggctggtgtgtgcatgagcatgatcatgtc 109 ||||||||||||| | ||||||||||||| | || ||||| ||||||||||||||| Sbjct: 1049 tggaactccctctcgtacctctccctgccgccggggttgtgcgcgagcatgatcatgtc 991
>gb|AC109491.3| Homo sapiens chromosome 5 clone RP11-727F19, complete sequence Length = 127489 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Minus Query: 83 tggtgtgtgcatgagcatgatcatgt 108 ||||||||||||| |||||||||||| Sbjct: 89322 tggtgtgtgcatgtgcatgatcatgt 89297
>emb|AL590326.3|CNS07EG7 Human chromosome 14 DNA sequence BAC R-477I4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 31184 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Minus Query: 56 ctccctctggctcctctccctgccgg 81 |||||||||||||| ||||||||||| Sbjct: 13035 ctccctctggctcccctccctgccgg 13010
>gb|BT009383.1| Triticum aestivum clone wlm96.pk033.c5:fis, full insert mRNA sequence Length = 1314 Score = 42.1 bits (21), Expect = 0.66 Identities = 48/57 (84%) Strand = Plus / Minus Query: 53 gaactccctctggctcctctccctgccggctggtgtgtgcatgagcatgatcatgtc 109 ||||||||||| | ||||||||||||| | || ||||| ||||||||||||||| Sbjct: 989 gaactccctctcgtacctctccctgccgccggggttgtgcgcgagcatgatcatgtc 933
>gb|AC116663.1| Rattus norvegicus, clone RP31-109I17, complete sequence Length = 165658 Score = 42.1 bits (21), Expect = 0.66 Identities = 27/29 (93%) Strand = Plus / Plus Query: 59 cctctggctcctctccctgccggctggtg 87 ||||||||||| ||||||||| ||||||| Sbjct: 72495 cctctggctccactccctgccagctggtg 72523
>gb|AY226581.1| Triticum aestivum caffeic acid O-methyltransferase (COMT1) mRNA, complete cds Length = 1371 Score = 42.1 bits (21), Expect = 0.66 Identities = 48/57 (84%) Strand = Plus / Minus Query: 53 gaactccctctggctcctctccctgccggctggtgtgtgcatgagcatgatcatgtc 109 ||||||||||| | ||||||||||||| | || ||||| ||||||||||||||| Sbjct: 1069 gaactccctctcgtacctctccctgccgccggggttgtgcgcgagcatgatcatgtc 1013
>gb|AF153824.1|AF153824 Festuca arundinacea comt1b caffeic acid O-methyltransferase mRNA, complete cds Length = 1440 Score = 42.1 bits (21), Expect = 0.66 Identities = 48/57 (84%) Strand = Plus / Minus Query: 53 gaactccctctggctcctctccctgccggctggtgtgtgcatgagcatgatcatgtc 109 ||||||||||| | ||||||||||||| | || ||||| ||||||||||||||| Sbjct: 1066 gaactccctctcgtacctctccctgccgccggggttgtgcgcgagcatgatcatgtc 1010
>gb|AC114003.4| Mus musculus chromosome 18 clone RP23-174C24, complete sequence Length = 223724 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 gtgtgtgcatgagcatgatcatgt 108 |||||||||||||||||| ||||| Sbjct: 130170 gtgtgtgcatgagcatgagcatgt 130147
>gb|AC144671.3| Mus musculus BAC clone RP24-292O2 from chromosome 9, complete sequence Length = 153253 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 gtgtgtgcatgagcatgatcatgt 108 |||||||||||||||||| ||||| Sbjct: 64820 gtgtgtgcatgagcatgagcatgt 64797
>emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chromosome 18, complete sequence Length = 174264 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gtgtgtgcatgagcatgatcatgt 108 |||||||||||||||||| ||||| Sbjct: 151546 gtgtgtgcatgagcatgagcatgt 151569 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,498,850 Number of Sequences: 3902068 Number of extensions: 1498850 Number of successful extensions: 108163 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108144 Number of HSP's gapped (non-prelim): 19 length of query: 206 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 184 effective length of database: 17,147,199,772 effective search space: 3155084758048 effective search space used: 3155084758048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)