ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet112e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF153823.1|AF153823 Festuca arundinacea comt1a caffeic acid O... 46 0.042
2gb|AF033540.1|AF033540 Lolium perenne caffeic acid O-methyltrans... 46 0.042
3gb|AF033538.1|AF033538 Lolium perenne caffeic acid O-methyltrans... 46 0.042
4gb|AC109491.3| Homo sapiens chromosome 5 clone RP11-727F19, comp... 44 0.17
5emb|AL590326.3|CNS07EG7 Human chromosome 14 DNA sequence BAC R-4... 44 0.17
6gb|BT009383.1| Triticum aestivum clone wlm96.pk033.c5:fis, full ... 42 0.66
7gb|AC116663.1| Rattus norvegicus, clone RP31-109I17, complete se... 42 0.66
8gb|AY226581.1| Triticum aestivum caffeic acid O-methyltransferas... 42 0.66
9gb|AF153824.1|AF153824 Festuca arundinacea comt1b caffeic acid O... 42 0.66
10gb|AC114003.4| Mus musculus chromosome 18 clone RP23-174C24, com... 40 2.6
11gb|AC144671.3| Mus musculus BAC clone RP24-292O2 from chromosome... 40 2.6
12emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chro... 40 2.6

>gb|AF153823.1|AF153823 Festuca arundinacea comt1a caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1446

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 51   tggaactccctctggctcctctccctgccggctggtgtgtgcatgagcatgatcatgtc 109
            ||||||||||||| |  ||||||||||||| | ||  |||||  |||||||||||||||
Sbjct: 1042 tggaactccctctcgtacctctccctgccgccggggttgtgcgcgagcatgatcatgtc 984



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>gb|AF033540.1|AF033540 Lolium perenne caffeic acid O-methyltransferase (OMT3) mRNA, complete
            cds
          Length = 1436

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 55   actccctctggctcctctccctgccggctggtgtgtgcatgagcatgatcatgtc 109
            ||||||||| |  ||||||||||||| ||||  |||||  |||||||||||||||
Sbjct: 1082 actccctctcgtacctctccctgccgcctgggttgtgcgcgagcatgatcatgtc 1028



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>gb|AF033538.1|AF033538 Lolium perenne caffeic acid O-methyltransferase (OMT1) mRNA, complete
            cds
          Length = 1455

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 51   tggaactccctctggctcctctccctgccggctggtgtgtgcatgagcatgatcatgtc 109
            ||||||||||||| |  ||||||||||||| | ||  |||||  |||||||||||||||
Sbjct: 1049 tggaactccctctcgtacctctccctgccgccggggttgtgcgcgagcatgatcatgtc 991



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>gb|AC109491.3| Homo sapiens chromosome 5 clone RP11-727F19, complete sequence
          Length = 127489

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 83    tggtgtgtgcatgagcatgatcatgt 108
             ||||||||||||| ||||||||||||
Sbjct: 89322 tggtgtgtgcatgtgcatgatcatgt 89297



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>emb|AL590326.3|CNS07EG7 Human chromosome 14 DNA sequence BAC R-477I4 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 31184

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 56    ctccctctggctcctctccctgccgg 81
             |||||||||||||| |||||||||||
Sbjct: 13035 ctccctctggctcccctccctgccgg 13010



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>gb|BT009383.1| Triticum aestivum clone wlm96.pk033.c5:fis, full insert mRNA
           sequence
          Length = 1314

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 53  gaactccctctggctcctctccctgccggctggtgtgtgcatgagcatgatcatgtc 109
           ||||||||||| |  ||||||||||||| | ||  |||||  |||||||||||||||
Sbjct: 989 gaactccctctcgtacctctccctgccgccggggttgtgcgcgagcatgatcatgtc 933



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>gb|AC116663.1| Rattus norvegicus, clone RP31-109I17, complete sequence
          Length = 165658

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 59    cctctggctcctctccctgccggctggtg 87
             ||||||||||| ||||||||| |||||||
Sbjct: 72495 cctctggctccactccctgccagctggtg 72523



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>gb|AY226581.1| Triticum aestivum caffeic acid O-methyltransferase (COMT1) mRNA,
            complete cds
          Length = 1371

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                     
Query: 53   gaactccctctggctcctctccctgccggctggtgtgtgcatgagcatgatcatgtc 109
            ||||||||||| |  ||||||||||||| | ||  |||||  |||||||||||||||
Sbjct: 1069 gaactccctctcgtacctctccctgccgccggggttgtgcgcgagcatgatcatgtc 1013



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>gb|AF153824.1|AF153824 Festuca arundinacea comt1b caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1440

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                     
Query: 53   gaactccctctggctcctctccctgccggctggtgtgtgcatgagcatgatcatgtc 109
            ||||||||||| |  ||||||||||||| | ||  |||||  |||||||||||||||
Sbjct: 1066 gaactccctctcgtacctctccctgccgccggggttgtgcgcgagcatgatcatgtc 1010



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>gb|AC114003.4| Mus musculus chromosome 18 clone RP23-174C24, complete sequence
          Length = 223724

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 85     gtgtgtgcatgagcatgatcatgt 108
              |||||||||||||||||| |||||
Sbjct: 130170 gtgtgtgcatgagcatgagcatgt 130147



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>gb|AC144671.3| Mus musculus BAC clone RP24-292O2 from chromosome 9, complete sequence
          Length = 153253

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 85    gtgtgtgcatgagcatgatcatgt 108
             |||||||||||||||||| |||||
Sbjct: 64820 gtgtgtgcatgagcatgagcatgt 64797



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>emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chromosome 18, complete
              sequence
          Length = 174264

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 85     gtgtgtgcatgagcatgatcatgt 108
              |||||||||||||||||| |||||
Sbjct: 151546 gtgtgtgcatgagcatgagcatgt 151569


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,498,850
Number of Sequences: 3902068
Number of extensions: 1498850
Number of successful extensions: 108163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108144
Number of HSP's gapped (non-prelim): 19
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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