>ref|NM_197798.1| Oryza sativa (japonica cultivar-group) putative chloroplast
           chaperonin (OSJNBa0057L21.3), mRNA
          Length = 683

 Score =  224 bits (113), Expect = 2e-55
 Identities = 176/197 (89%)
 Strand = Plus / Minus

                                                                       
Query: 277 agatccgactctctgcagaagcagtgcctctcttctgttcccaggtccacctcataagcg 336
           ||||| ||||| | ||||||||||||| |||| || || |||||||||||||||||||| 
Sbjct: 482 agatcagactcacggcagaagcagtgcttctcatcggtacccaggtccacctcataagca 423

                                                                       
Query: 337 tttatgtccgagaagagaaccttctttccagcttcaacttcactaacatcaacaccgacc 396
           |||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| || 
Sbjct: 422 tttatgtcagagaagagaaccttctttccagcttcaacttcattaacatcagcaccaaca 363

                                                                       
Query: 397 gataaaatctcgcccatcaaatatctctcaaatttaacagcagattttggtagcagaact 456
           || |||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct: 362 gacaaaatctcacccatcaaatacctctcaaacttaacagcagattttggcagcaggact 303

                            
Query: 457 cccccagcagatttctc 473
           || ||| ||||||||||
Sbjct: 302 cctccaacagatttctc 286

>gb|AY110237.1| Zea mays CL7048_1 mRNA sequence
          Length = 972

 Score =  170 bits (86), Expect = 3e-39
 Identities = 140/158 (88%)
 Strand = Plus / Minus

                                                                       
Query: 322 tccacctcataagcgtttatgtccgagaagagaaccttctttccagcttcaacttcacta 381
           |||||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||| 
Sbjct: 608 tccacctcataagcattgatgtctgagaagagaaccttcttcccagcctcaacttcactg 549

                                                                       
Query: 382 acatcaacaccgaccgataaaatctcgcccatcaaatatctctcaaatttaacagcagat 441
           || ||| |||||| ||||| |||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 548 acttcagcaccgatcgatagaatctcacccatcagatatctctcaaacttaacagcagat 489

                                                 
Query: 442 tttggtagcagaactcccccagcagatttctctgggat 479
           ||||||||||  || || |||||||||||||| |||||
Sbjct: 488 tttggtagcaatacaccgccagcagatttctcagggat 451

>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete
             sequence
          Length = 183046

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                         
Query: 409   cccatcaaatatctctcaaatttaacagcagattttggtagcagaactcccccagcagat 468
             ||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||| |||||
Sbjct: 73249 cccatcaaatacctctcaaacttaacagcagattttggcagcaggactcctccaacagat 73308

                 
Query: 469   ttct 472
             ||||
Sbjct: 73309 ttct 73312



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 355   accttctttccagcttcaacttcactaacatcaacaccgaccgataaaatct 406
             |||||||||||||||||||||||| |||||||| |||| || || |||||||
Sbjct: 73109 accttctttccagcttcaacttcattaacatcagcaccaacagacaaaatct 73160



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 325   acctcataagcgtttatgtccgagaagagaacct 358
             ||||||||||| |||||||| |||||||||||||
Sbjct: 71866 acctcataagcatttatgtcagagaagagaacct 71899



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 277   agatccgactctctgcagaagcagtgcctctcttctgttcccaggtccacct 328
             ||||| ||||| | ||||||||||||| |||| || || |||||||||||||
Sbjct: 71621 agatcagactcacggcagaagcagtgcttctcatcggtacccaggtccacct 71672

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 409      cccatcaaatatctctcaaatttaacagcagattttggtagcagaactcccccagcagat 468
                ||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||| |||||
Sbjct: 21935072 cccatcaaatacctctcaaacttaacagcagattttggcagcaggactcctccaacagat 21935013

                    
Query: 469      ttct 472
                ||||
Sbjct: 21935012 ttct 21935009



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 355      accttctttccagcttcaacttcactaacatcaacaccgaccgataaaatct 406
                |||||||||||||||||||||||| |||||||| |||| || || |||||||
Sbjct: 21935212 accttctttccagcttcaacttcattaacatcagcaccaacagacaaaatct 21935161



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 325      acctcataagcgtttatgtccgagaagagaacct 358
                ||||||||||| |||||||| |||||||||||||
Sbjct: 21936455 acctcataagcatttatgtcagagaagagaacct 21936422



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                    
Query: 277      agatccgactctctgcagaagcagtgcctctcttctgttcccaggtccacct 328
                ||||| ||||| | ||||||||||||| |||| || || |||||||||||||
Sbjct: 21936700 agatcagactcacggcagaagcagtgcttctcatcggtacccaggtccacct 21936649

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 409      cccatcaaatatctctcaaatttaacagcagattttggtagcagaactcccccagcagat 468
                ||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||| |||||
Sbjct: 21946735 cccatcaaatacctctcaaacttaacagcagattttggcagcaggactcctccaacagat 21946676

                    
Query: 469      ttct 472
                ||||
Sbjct: 21946675 ttct 21946672



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 355      accttctttccagcttcaacttcactaacatcaacaccgaccgataaaatct 406
                |||||||||||||||||||||||| |||||||| |||| || || |||||||
Sbjct: 21946875 accttctttccagcttcaacttcattaacatcagcaccaacagacaaaatct 21946824



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 325      acctcataagcgtttatgtccgagaagagaacct 358
                ||||||||||| |||||||| |||||||||||||
Sbjct: 21948118 acctcataagcatttatgtcagagaagagaacct 21948085



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                    
Query: 277      agatccgactctctgcagaagcagtgcctctcttctgttcccaggtccacct 328
                ||||| ||||| | ||||||||||||| |||| || || |||||||||||||
Sbjct: 21948363 agatcagactcacggcagaagcagtgcttctcatcggtacccaggtccacct 21948312

>gb|BT012852.1| Lycopersicon esculentum clone 113931R, mRNA sequence
          Length = 622

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 313 gttcccaggtccacctcataagcgtttatgtccgagaagagaaccttctt 362
           |||||||  |||||||||||||| || ||||| ||||| |||||||||||
Sbjct: 382 gttcccaaatccacctcataagcattgatgtcagagaaaagaaccttctt 333

>emb|CT573077.2| Medicago truncatula chromosome 5 clone mth2-43j18, COMPLETE SEQUENCE
          Length = 142338

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 111   ttggcaacaaaagaaacacatg 132
             ||||||||||||||||||||||
Sbjct: 13369 ttggcaacaaaagaaacacatg 13390

>emb|CT573215.2| Medicago truncatula chromosome 5 clone mth2-51h23, COMPLETE SEQUENCE
          Length = 121342

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 111   ttggcaacaaaagaaacacatg 132
             ||||||||||||||||||||||
Sbjct: 33917 ttggcaacaaaagaaacacatg 33896

>gb|AC106169.5| Rattus norvegicus x BAC CH230-105D14 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 227592

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   caacaaaagaaacacatgtat 135
             |||||||||||||||||||||
Sbjct: 32057 caacaaaagaaacacatgtat 32037

>gb|AC120856.6| Mus musculus chromosome 1, clone RP23-284B21, complete sequence
          Length = 261249

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 298    cagtgcctctcttctgttccc 318
              |||||||||||||||||||||
Sbjct: 231059 cagtgcctctcttctgttccc 231079

>gb|AC157795.4| Mus musculus chromosome 1, clone RP24-122B24, complete sequence
          Length = 158636

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   cagtgcctctcttctgttccc 318
             |||||||||||||||||||||
Sbjct: 72888 cagtgcctctcttctgttccc 72908

>gb|AC016885.16| Homo sapiens chromosome 8, clone RP11-388K12, complete sequence
          Length = 210008

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 360  ctttccagcttcaacttcac 379
            ||||||||||||||||||||
Sbjct: 3690 ctttccagcttcaacttcac 3671

>gb|AC131951.1| Homo sapiens BAC clone RP11-452L12 from 4, complete sequence
          Length = 138872

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 413    tcaaatatctctcaaattta 432
              ||||||||||||||||||||
Sbjct: 102708 tcaaatatctctcaaattta 102727

>gb|AC114797.5| Homo sapiens BAC clone RP11-704M14 from 4, complete sequence
          Length = 43323

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   ctcaaatttaacagcagatt 442
             ||||||||||||||||||||
Sbjct: 13983 ctcaaatttaacagcagatt 14002

>gb|AC022825.9| Homo sapiens chromosome 8, clone RP11-88J22, complete sequence
          Length = 191772

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    ctttccagcttcaacttcac 379
              ||||||||||||||||||||
Sbjct: 168210 ctttccagcttcaacttcac 168191

>dbj|AK124272.1| Homo sapiens cDNA FLJ42278 fis, clone TLIVE2002562
          Length = 2648

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 423  ctcaaatttaacagcagatt 442
            ||||||||||||||||||||
Sbjct: 2302 ctcaaatttaacagcagatt 2321

>gb|AC114786.4| Homo sapiens BAC clone RP11-618I10 from 4, complete sequence
          Length = 148977

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    ctcaaatttaacagcagatt 442
              ||||||||||||||||||||
Sbjct: 144035 ctcaaatttaacagcagatt 144016



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   ctcaaatttaacagcagatt 442
             ||||||||||||||||||||
Sbjct: 35046 ctcaaatttaacagcagatt 35027

>gb|AC108078.3| Homo sapiens BAC clone RP11-790I12 from 4, complete sequence
          Length = 103343

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   ctcaaatttaacagcagatt 442
             ||||||||||||||||||||
Sbjct: 16409 ctcaaatttaacagcagatt 16390

>gb|AC096755.2| Homo sapiens BAC clone RP11-519M16 from 4, complete sequence
          Length = 182440

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   cttctttccagcttcaactt 376
             ||||||||||||||||||||
Sbjct: 27729 cttctttccagcttcaactt 27748

>gb|AC182428.2| Pan troglodytes BAC clone CH251-637G21 from chromosome 4, complete
              sequence
          Length = 210098

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    ctcaaatttaacagcagatt 442
              ||||||||||||||||||||
Sbjct: 153779 ctcaaatttaacagcagatt 153760

>gb|AC007595.9| Homo sapiens chromosome 16 clone RP11-109M19, complete sequence
          Length = 186303

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   gttcccaggtccacctcata 332
             ||||||||||||||||||||
Sbjct: 20747 gttcccaggtccacctcata 20728

>gb|AC105046.10| Homo sapiens chromosome 8, clone CTD-3247F14, complete sequence
          Length = 87734

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   agaaccttctttccagcttc 371
             ||||||||||||||||||||
Sbjct: 38586 agaaccttctttccagcttc 38605

>gb|AC002073.1|AC002073 Human PAC clone RP3-515N1 from 22q11.2-q22, complete sequence
          Length = 128978

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    tcaaatcactcaacccatga 165
              ||||||||||||||||||||
Sbjct: 110432 tcaaatcactcaacccatga 110451

>emb|BX276085.8| Zebrafish DNA sequence from clone CH211-194B5 in linkage group 19,
              complete sequence
          Length = 202683

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    atcaaatatctctcaaattt 431
              ||||||||||||||||||||
Sbjct: 189186 atcaaatatctctcaaattt 189167


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,821,747
Number of Sequences: 3902068
Number of extensions: 4821747
Number of successful extensions: 162415
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 162292
Number of HSP's gapped (non-prelim): 123
length of query: 485
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 463
effective length of database: 17,147,199,772
effective search space: 7939153494436
effective search space used: 7939153494436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)