| Clone Name | rbaet112a06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|BX897686.8| Zebrafish DNA sequence from clone DKEY-145M5 in linkage group 15, complete sequence Length = 115533 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Plus Query: 39 cagagattctgaactgacaccgttga 64 |||||||||||||||||||| ||||| Sbjct: 90187 cagagattctgaactgacactgttga 90212
>emb|BX511308.11| Zebrafish DNA sequence from clone DKEYP-118E10 in linkage group 15, complete sequence Length = 123109 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Minus Query: 39 cagagattctgaactgacaccgttga 64 |||||||||||||||||||| ||||| Sbjct: 59966 cagagattctgaactgacactgttga 59941
>gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence Length = 165269 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 agcacattaatgaggtaaac 117 |||||||||||||||||||| Sbjct: 55795 agcacattaatgaggtaaac 55776
>emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in linkage group 3, complete sequence Length = 182043 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 agcacattaatgaggtaaac 117 |||||||||||||||||||| Sbjct: 131986 agcacattaatgaggtaaac 132005
>emb|BX571790.8| Zebrafish DNA sequence from clone CH211-199M3 in linkage group 20, complete sequence Length = 200944 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gagaagcacattaatgaggtaaac 117 |||||||||||||| ||||||||| Sbjct: 67843 gagaagcacattaaagaggtaaac 67866
>gb|AC147988.3| Mus musculus BAC clone RP24-459A9 from chromosome 18, complete sequence Length = 155208 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 tgacaccgttgaacacatt 71 ||||||||||||||||||| Sbjct: 62435 tgacaccgttgaacacatt 62453
>gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 157107 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 acagagattctgaactgac 56 ||||||||||||||||||| Sbjct: 113575 acagagattctgaactgac 113593
>emb|AL161716.14| Human DNA sequence from clone RP11-266E6 on chromosome 13 Contains the 3' end of a novel gene, a guanidinoacetate N-methyltransferase (GAMT) pseudogene and a CpG island, complete sequence Length = 164345 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 acacattgaaaaccgacat 83 ||||||||||||||||||| Sbjct: 30695 acacattgaaaaccgacat 30713
>emb|AL137067.7| Human DNA sequence from clone RP11-13B9 on chromosome 9q22.32-31.3 Contains a gene for a novel protein similar to a glycosyltransferase, the gene for protein translocation complex beta (SEC61B), a novel gene for a protein similar to cytokeratin 8 (KRT8)and a CpG island, complete sequence Length = 197169 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 aattaacagagattctgaa 51 ||||||||||||||||||| Sbjct: 56542 aattaacagagattctgaa 56524
>ref|XM_965610.1| PREDICTED: Tribolium castaneum similar to F59H6.5 (LOC659286), mRNA Length = 3057 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 79 gacataaaatagcacgagaagca 101 ||||||| ||||||||||||||| Sbjct: 2737 gacataagatagcacgagaagca 2715
>ref|NM_141573.2| Drosophila melanogaster CG8236-RA (CG8236), mRNA Length = 1568 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 acgagaagcacattaatga 110 ||||||||||||||||||| Sbjct: 1097 acgagaagcacattaatga 1115
>ref|NM_057657.4| Drosophila melanogaster capping protein beta CG17158-RA (cpb), mRNA Length = 1774 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 cacgagaagcacattaatg 109 ||||||||||||||||||| Sbjct: 1352 cacgagaagcacattaatg 1370
>gb|AY089407.1| Drosophila melanogaster AT23003 full insert cDNA Length = 1581 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 acgagaagcacattaatga 110 ||||||||||||||||||| Sbjct: 1097 acgagaagcacattaatga 1115
>gb|AY069829.1| Drosophila melanogaster SD07714 full length cDNA Length = 1620 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 cacgagaagcacattaatg 109 ||||||||||||||||||| Sbjct: 1335 cacgagaagcacattaatg 1353
>gb|AC104630.1| Drosophila melanogaster, chromosome 2L, region 22B-22C, BAC clone BACR19B15, complete sequence Length = 180088 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 cacgagaagcacattaatg 109 ||||||||||||||||||| Sbjct: 48860 cacgagaagcacattaatg 48842
>gb|AC009512.6| Drosophila melanogaster, chromosome 3R, region 85B-85B, BAC clone BACR01F13, complete sequence Length = 167467 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 acgagaagcacattaatga 110 ||||||||||||||||||| Sbjct: 19595 acgagaagcacattaatga 19577
>gb|AC008314.7|AC008314 Drosophila melanogaster, chromosome 3R, region 85B-85B, BAC clone BACR02B21, complete sequence Length = 186322 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 acgagaagcacattaatga 110 ||||||||||||||||||| Sbjct: 69024 acgagaagcacattaatga 69042
>gb|AE003680.4| Drosophila melanogaster chromosome 3R, section 18 of 118 of the complete sequence Length = 270517 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 acgagaagcacattaatga 110 ||||||||||||||||||| Sbjct: 109886 acgagaagcacattaatga 109904
>gb|AE003585.5| Drosophila melanogaster chromosome 2L, section 6 of 83 of the complete sequence Length = 343161 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 cacgagaagcacattaatg 109 ||||||||||||||||||| Sbjct: 165172 cacgagaagcacattaatg 165190
>gb|AC004442.1|AC004442 Drosophila melanogaster, chromosome 2L, region 22A3-22A7, P1 clone DS04260, complete sequence Length = 80376 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 cacgagaagcacattaatg 109 ||||||||||||||||||| Sbjct: 60224 cacgagaagcacattaatg 60242 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 997,766 Number of Sequences: 3902068 Number of extensions: 997766 Number of successful extensions: 58456 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58428 Number of HSP's gapped (non-prelim): 28 length of query: 170 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 148 effective length of database: 17,147,199,772 effective search space: 2537785566256 effective search space used: 2537785566256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)