ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet112a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX897686.8| Zebrafish DNA sequence from clone DKEY-145M5 in ... 44 0.13
2emb|BX511308.11| Zebrafish DNA sequence from clone DKEYP-118E10 ... 44 0.13
3gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence 40 2.1
4emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in ... 40 2.1
5emb|BX571790.8| Zebrafish DNA sequence from clone CH211-199M3 in... 40 2.1
6gb|AC147988.3| Mus musculus BAC clone RP24-459A9 from chromosome... 38 8.3
7gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's H... 38 8.3
8emb|AL161716.14| Human DNA sequence from clone RP11-266E6 on chr... 38 8.3
9emb|AL137067.7| Human DNA sequence from clone RP11-13B9 on chrom... 38 8.3
10ref|XM_965610.1| PREDICTED: Tribolium castaneum similar to F59H6... 38 8.3
11ref|NM_141573.2| Drosophila melanogaster CG8236-RA (CG8236), mRNA 38 8.3
12ref|NM_057657.4| Drosophila melanogaster capping protein beta CG... 38 8.3
13gb|AY089407.1| Drosophila melanogaster AT23003 full insert cDNA 38 8.3
14gb|AY069829.1| Drosophila melanogaster SD07714 full length cDNA 38 8.3
15gb|AC104630.1| Drosophila melanogaster, chromosome 2L, region 22... 38 8.3
16gb|AC009512.6| Drosophila melanogaster, chromosome 3R, region 85... 38 8.3
17gb|AC008314.7|AC008314 Drosophila melanogaster, chromosome 3R, r... 38 8.3
18gb|AE003680.4| Drosophila melanogaster chromosome 3R, section 18... 38 8.3
19gb|AE003585.5| Drosophila melanogaster chromosome 2L, section 6 ... 38 8.3
20gb|AC004442.1|AC004442 Drosophila melanogaster, chromosome 2L, r... 38 8.3

>emb|BX897686.8| Zebrafish DNA sequence from clone DKEY-145M5 in linkage group 15,
             complete sequence
          Length = 115533

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 39    cagagattctgaactgacaccgttga 64
             |||||||||||||||||||| |||||
Sbjct: 90187 cagagattctgaactgacactgttga 90212



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>emb|BX511308.11| Zebrafish DNA sequence from clone DKEYP-118E10 in linkage group 15,
             complete sequence
          Length = 123109

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 39    cagagattctgaactgacaccgttga 64
             |||||||||||||||||||| |||||
Sbjct: 59966 cagagattctgaactgacactgttga 59941



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>gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence
          Length = 165269

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    agcacattaatgaggtaaac 117
             ||||||||||||||||||||
Sbjct: 55795 agcacattaatgaggtaaac 55776



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>emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in linkage group 3, complete
              sequence
          Length = 182043

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     agcacattaatgaggtaaac 117
              ||||||||||||||||||||
Sbjct: 131986 agcacattaatgaggtaaac 132005



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>emb|BX571790.8| Zebrafish DNA sequence from clone CH211-199M3 in linkage group 20,
             complete sequence
          Length = 200944

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 94    gagaagcacattaatgaggtaaac 117
             |||||||||||||| |||||||||
Sbjct: 67843 gagaagcacattaaagaggtaaac 67866



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>gb|AC147988.3| Mus musculus BAC clone RP24-459A9 from chromosome 18, complete sequence
          Length = 155208

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    tgacaccgttgaacacatt 71
             |||||||||||||||||||
Sbjct: 62435 tgacaccgttgaacacatt 62453



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>gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 157107

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 38     acagagattctgaactgac 56
              |||||||||||||||||||
Sbjct: 113575 acagagattctgaactgac 113593



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>emb|AL161716.14| Human DNA sequence from clone RP11-266E6 on chromosome 13 Contains the
             3' end of a novel gene, a guanidinoacetate
             N-methyltransferase (GAMT) pseudogene and a CpG island,
             complete sequence
          Length = 164345

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    acacattgaaaaccgacat 83
             |||||||||||||||||||
Sbjct: 30695 acacattgaaaaccgacat 30713



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>emb|AL137067.7| Human DNA sequence from clone RP11-13B9 on chromosome 9q22.32-31.3
             Contains a gene for a novel protein similar to a
             glycosyltransferase, the gene for protein translocation
             complex beta (SEC61B), a novel gene for a protein similar
             to cytokeratin 8 (KRT8)and a CpG island, complete sequence
          Length = 197169

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    aattaacagagattctgaa 51
             |||||||||||||||||||
Sbjct: 56542 aattaacagagattctgaa 56524



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>ref|XM_965610.1| PREDICTED: Tribolium castaneum similar to F59H6.5 (LOC659286), mRNA
          Length = 3057

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 79   gacataaaatagcacgagaagca 101
            ||||||| |||||||||||||||
Sbjct: 2737 gacataagatagcacgagaagca 2715



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>ref|NM_141573.2| Drosophila melanogaster CG8236-RA (CG8236), mRNA
          Length = 1568

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 92   acgagaagcacattaatga 110
            |||||||||||||||||||
Sbjct: 1097 acgagaagcacattaatga 1115



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>ref|NM_057657.4| Drosophila melanogaster capping protein beta CG17158-RA (cpb), mRNA
          Length = 1774

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 91   cacgagaagcacattaatg 109
            |||||||||||||||||||
Sbjct: 1352 cacgagaagcacattaatg 1370



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>gb|AY089407.1| Drosophila melanogaster AT23003 full insert cDNA
          Length = 1581

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 92   acgagaagcacattaatga 110
            |||||||||||||||||||
Sbjct: 1097 acgagaagcacattaatga 1115



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>gb|AY069829.1| Drosophila melanogaster SD07714 full length cDNA
          Length = 1620

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 91   cacgagaagcacattaatg 109
            |||||||||||||||||||
Sbjct: 1335 cacgagaagcacattaatg 1353



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>gb|AC104630.1| Drosophila melanogaster, chromosome 2L, region 22B-22C, BAC clone
             BACR19B15, complete sequence
          Length = 180088

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 91    cacgagaagcacattaatg 109
             |||||||||||||||||||
Sbjct: 48860 cacgagaagcacattaatg 48842



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>gb|AC009512.6| Drosophila melanogaster, chromosome 3R, region 85B-85B, BAC clone
             BACR01F13, complete sequence
          Length = 167467

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 92    acgagaagcacattaatga 110
             |||||||||||||||||||
Sbjct: 19595 acgagaagcacattaatga 19577



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>gb|AC008314.7|AC008314 Drosophila melanogaster, chromosome 3R, region 85B-85B, BAC clone
             BACR02B21, complete sequence
          Length = 186322

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 92    acgagaagcacattaatga 110
             |||||||||||||||||||
Sbjct: 69024 acgagaagcacattaatga 69042



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>gb|AE003680.4| Drosophila melanogaster chromosome 3R, section 18 of 118 of the complete
              sequence
          Length = 270517

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 92     acgagaagcacattaatga 110
              |||||||||||||||||||
Sbjct: 109886 acgagaagcacattaatga 109904



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>gb|AE003585.5| Drosophila melanogaster chromosome 2L, section 6 of 83 of the complete
              sequence
          Length = 343161

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 91     cacgagaagcacattaatg 109
              |||||||||||||||||||
Sbjct: 165172 cacgagaagcacattaatg 165190



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>gb|AC004442.1|AC004442 Drosophila melanogaster, chromosome 2L, region 22A3-22A7, P1 clone
             DS04260, complete sequence
          Length = 80376

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    cacgagaagcacattaatg 109
             |||||||||||||||||||
Sbjct: 60224 cacgagaagcacattaatg 60242


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 997,766
Number of Sequences: 3902068
Number of extensions: 997766
Number of successful extensions: 58456
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58428
Number of HSP's gapped (non-prelim): 28
length of query: 170
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 148
effective length of database: 17,147,199,772
effective search space: 2537785566256
effective search space used: 2537785566256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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