ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet10h04 |
|---|---|
| Clone Library Name | barley_pub |
>YIAH_ECOLI (P37669) Inner membrane protein yiaH| Length = 331 Score = 31.6 bits (70), Expect = 0.52 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 10/60 (16%) Frame = +2 Query: 74 IHTPTFRQTNKHCLSPVTW----------RVTAPIQLLRGRVCILNVSSLSQKKALRAGV 223 IHT T+ TN H +SPVTW RV+ P+ + S + LR G+ Sbjct: 22 IHTTTWYVTNAHSVSPVTWDIANVLNSASRVSVPLFFMISGYLFFGERSAQPRHFLRIGL 81
>EPIPL_MOUSE (Q8R0W0) Epiplakin| Length = 6548 Score = 30.8 bits (68), Expect = 0.89 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +1 Query: 106 ALPVPGNVARDRTHSITSWPCLHSQCIFALSKKSPACRC 222 A+ VP N+ R + HS++ W LHS+ + A ++ C Sbjct: 1460 AMKVPINMGRFQGHSVSLWDLLHSEYVGAEKRRELVALC 1498
>EREG_MOUSE (Q61521) Epiregulin precursor| Length = 162 Score = 29.3 bits (64), Expect = 2.6 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +1 Query: 166 CLHSQCIFALSKKSPACRCK 225 CLH QCI+ + + CRC+ Sbjct: 69 CLHGQCIYLVDMREKFCRCE 88
>IAP1_NPVOP (O10296) Apoptosis inhibitor 1 (IAP-1)| Length = 275 Score = 28.1 bits (61), Expect = 5.7 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Frame = +1 Query: 52 AHTSPGRNSHAHLPTNQ*ALPVPGNVARDRTHSITSWPCLH----SQCIFALSKKSPACR 219 A T+PG + A + + V +R PC H QC FAL K P CR Sbjct: 208 AETAPGEPAPAFAGSEA----LECKVCLERQRDAVLLPCRHFCVCMQCYFALDGKCPTCR 263
>EREG_HUMAN (O14944) Epiregulin precursor| Length = 169 Score = 28.1 bits (61), Expect = 5.7 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +1 Query: 166 CLHSQCIFALSKKSPACRCK 225 CLH QCI+ + CRC+ Sbjct: 76 CLHGQCIYLVDMSQNYCRCE 95
>Y1519_METJA (Q58914) Hypothetical protein MJ1519| Length = 1175 Score = 27.7 bits (60), Expect = 7.5 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 7/101 (6%) Frame = +2 Query: 44 VQRHTLAREGIHTPTFRQTNKHCLSPVTWRVTAPIQLLRGRVCILNV--SSLSQKKALRA 217 VQ H + I + N+H + + + ++++ G+ IL V + LS+ + + Sbjct: 71 VQEHNIRFPAIFYVDRKNRNEHEIKMIKKEIEEQLRMINGKYAILYVRENPLSENRVIVG 130 Query: 218 GVKQRE---ATAPIMARRAS*NLEGGGPVLD--DDVLHLPP 325 VK +E + + ++ S N G G V D +DV+ P Sbjct: 131 CVKIKEIIDGSKDYIRKKQSPNRVGRGIVFDVENDVIFALP 171
>TEFF2_MOUSE (Q9QYM9) Transmembrane protein with EGF-like and two| follistatin-like domains 2 precursor (Tomoregulin) (TR) Length = 374 Score = 27.7 bits (60), Expect = 7.5 Identities = 7/19 (36%), Positives = 14/19 (73%) Frame = +1 Query: 166 CLHSQCIFALSKKSPACRC 222 C+H +C +++ + P+CRC Sbjct: 273 CMHGKCEHSINMQEPSCRC 291
>TEFF2_HUMAN (Q9UIK5) Transmembrane protein with EGF-like and two| follistatin-like domains 2 precursor (Transmembrane protein containing epidermal growth factor and follistatin domains) (Tomoregulin) (TR) (Hyperplastic polyposis protein 1) Length = 374 Score = 27.7 bits (60), Expect = 7.5 Identities = 7/19 (36%), Positives = 14/19 (73%) Frame = +1 Query: 166 CLHSQCIFALSKKSPACRC 222 C+H +C +++ + P+CRC Sbjct: 273 CMHGKCEHSINMQEPSCRC 291
>RK33_PHYPA (Q6YXM3) Chloroplast 50S ribosomal protein L33| Length = 66 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 17 KN*EKKNSGVQRHTLAREGIHTPTFRQTNKHC 112 +N EKK GV R+T + +TPT + K C Sbjct: 21 QNNEKKKLGVSRYTTQKNRRNTPTRLELKKFC 52
>BTC_MOUSE (Q05928) Betacellulin precursor (BTC)| Length = 177 Score = 27.7 bits (60), Expect = 7.5 Identities = 7/20 (35%), Positives = 15/20 (75%) Frame = +1 Query: 166 CLHSQCIFALSKKSPACRCK 225 C+H +C F + +++P+C C+ Sbjct: 77 CIHGRCRFVVDEQTPSCICE 96
>CNTFR_RAT (Q08406) Ciliary neurotrophic factor receptor alpha precursor| (CNTFR alpha) Length = 372 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +1 Query: 13 DQELGEEKQWSTTAHTSPGRNSHAHLPT 96 D E+G WS AH +P HL T Sbjct: 284 DNEIGTWSDWSVAAHATPWTEEPRHLTT 311
>CNTFR_MOUSE (O88507) Ciliary neurotrophic factor receptor alpha precursor| (CNTFR alpha) Length = 372 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +1 Query: 13 DQELGEEKQWSTTAHTSPGRNSHAHLPT 96 D E+G WS AH +P HL T Sbjct: 284 DNEIGTWSDWSVAAHATPWTEEPRHLTT 311
>CNTFR_HUMAN (P26992) Ciliary neurotrophic factor receptor alpha precursor| (CNTFR alpha) Length = 372 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +1 Query: 13 DQELGEEKQWSTTAHTSPGRNSHAHLPT 96 D E+G WS AH +P HL T Sbjct: 284 DNEIGTWSDWSVAAHATPWTEEPRHLTT 311
>TGFA_SHEEP (P98135) Transforming growth factor alpha precursor (TGF-alpha)| (EGF-like TGF) (ETGF) (TGF type 1) (Fragment) Length = 133 Score = 27.3 bits (59), Expect = 9.8 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = +1 Query: 166 CLHSQCIFALSKKSPACRC 222 C H C F L ++ PAC C Sbjct: 54 CFHGTCRFLLQEEKPACVC 72
>PKP3_MOUSE (Q9QY23) Plakophilin-3| Length = 797 Score = 27.3 bits (59), Expect = 9.8 Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 3/98 (3%) Frame = +2 Query: 38 SGVQRHTLAREGIHTPTFRQTNKHCLSPVTWRVTAPIQLLRGRVCILNVSSLSQKKAL-- 211 +G + G T TFR K SP +W + + L C +SS + Sbjct: 89 TGFSSRSQGMSGDKTSTFRPIAKPAYSPASWSSRSAVDL----TCSRRLSSAHNGGSAFG 144 Query: 212 RAGVKQREATAPIMARRAS*NLEGGGPV-LDDDVLHLP 322 G + T P+ R S + GG D D L LP Sbjct: 145 AVGYGGTQPTPPMPTRPVSFHERGGAASRADYDTLSLP 182
>CNTFR_CANFA (Q71DR4) Ciliary neurotrophic factor receptor alpha precursor| (CNTFR alpha) Length = 372 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +1 Query: 13 DQELGEEKQWSTTAHTSPGRNSHAHLPT 96 D E+G WS AH +P HL T Sbjct: 284 DYEIGTWSDWSVAAHATPWTEEPRHLTT 311 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,892,890 Number of Sequences: 219361 Number of extensions: 819920 Number of successful extensions: 2052 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2011 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2051 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
