ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet10f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY887063.1| Hordeum vulgare aerobic Mg-protoporphyrin IX mono... 454 e-125
2ref|NM_188121.1| Oryza sativa (japonica cultivar-group), Ozsa855... 123 4e-25
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 123 4e-25
4dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic D... 123 4e-25
5dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic D... 123 4e-25
6dbj|AK069333.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
7dbj|AK061646.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
8dbj|AK059435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
9dbj|AK058287.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
10gb|AY108897.1| Zea mays PCO080076 mRNA sequence 94 3e-16
11ref|NM_115554.2| Arabidopsis thaliana transporter AT3G56950 mRNA... 54 3e-04
12ref|NM_115553.2| Arabidopsis thaliana AT103 (DICARBOXYLATE DIIRO... 54 3e-04
13emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BA... 54 3e-04
14emb|AL138655.1|ATF24I3 Arabidopsis thaliana DNA chromosome 3, BA... 54 3e-04
15gb|AF236101.1| Arabidopsis thaliana putative dicarboxylate diiro... 54 3e-04
16gb|U38232.1|ATU38232 Arabidopsis thaliana AT103 mRNA, complete cds 54 3e-04
17gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete se... 50 0.004
18gb|AY322552.1| Triticum aestivum putative fatty acid desaturase ... 46 0.070
19ref|XM_777570.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.1
20dbj|AP000752.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.1
21gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 42 1.1
22gb|AC119839.8| Mus musculus chromosome 1, clone RP24-170N13, com... 40 4.3
23gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosom... 40 4.3
24emb|AL109897.30|HSJ134M13 Human DNA sequence from clone RP1-134M... 40 4.3
25gb|AC153138.3| Mus musculus BAC clone RP23-442K7 from chromosome... 40 4.3
26gb|AC154207.3| Mus musculus BAC clone RP24-377E1 from chromosome... 40 4.3
27gb|AC068722.6|AC068722 Homo sapiens chromosome 15 clone CTD-2306... 40 4.3
28dbj|AK111043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
29emb|AL935126.18| Zebrafish DNA sequence from clone CH211-186J3, ... 40 4.3
30dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 4.3
31gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome... 40 4.3 
>gb|AY887063.1| Hordeum vulgare aerobic Mg-protoporphyrin IX monomethyl ester cyclase
            (Xantha-l) gene, complete cds
          Length = 2097

 Score =  454 bits (229), Expect = e-125
 Identities = 235/237 (99%)
 Strand = Plus / Minus

                                                                        
Query: 92   caggtgagcacaggaagatgtagatcatgttaattaaccatggaccctgtgctcatttaa 151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 2097 caggtgagcacaggaagatgtagatcatgttaattaaccatggaccctgtgctcatttag 2038

                                                                        
Query: 152  agactctcgaggagcatgatgcatcattatgtttgtaaagataggcagagatgaatcctt 211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2037 agactctcgaggagcatgatgcatcattatgtttgtaaagataggcagagatgaatcctt 1978

                                                                        
Query: 212  tttcgacaaattcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagac 271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1977 tttcgacaaattcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagac 1918

                                                                     
Query: 272  tcgattgggggcatgaggtacgcatcgatgatctcagacactagttgggcaataaga 328
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1917 tcgattgggggcatgaggtacgcagcgatgatctcagacactagttgggcaataaga 1861
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>ref|NM_188121.1| Oryza sativa (japonica cultivar-group), Ozsa8553 predicted mRNA
          Length = 1227

 Score =  123 bits (62), Expect = 4e-25
 Identities = 83/90 (92%)
 Strand = Plus / Minus

                                                                        
Query: 223  tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 282
            |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 1227 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 1168

                                          
Query: 283  catgaggtacgcatcgatgatctcagacac 312
            ||||||||||||| | ||||||||||||||
Sbjct: 1167 catgaggtacgcagcaatgatctcagacac 1138
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  123 bits (62), Expect = 4e-25
 Identities = 83/90 (92%)
 Strand = Plus / Minus

                                                                           
Query: 223     tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 282
               |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 9875240 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 9875181

                                             
Query: 283     catgaggtacgcatcgatgatctcagacac 312
               ||||||||||||| | ||||||||||||||
Sbjct: 9875180 catgaggtacgcagcaatgatctcagacac 9875151



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 45      tgatgcagttcactgccactta 66
               ||||||||||||||||||||||
Sbjct: 9875448 tgatgcagttcactgccactta 9875427
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>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0025D05
          Length = 145684

 Score =  123 bits (62), Expect = 4e-25
 Identities = 83/90 (92%)
 Strand = Plus / Minus

                                                                          
Query: 223    tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 282
              |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 139490 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 139431

                                            
Query: 283    catgaggtacgcatcgatgatctcagacac 312
              ||||||||||||| | ||||||||||||||
Sbjct: 139430 catgaggtacgcagcaatgatctcagacac 139401



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 45     tgatgcagttcactgccactta 66
              ||||||||||||||||||||||
Sbjct: 139698 tgatgcagttcactgccactta 139677
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>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0003H10
          Length = 142418

 Score =  123 bits (62), Expect = 4e-25
 Identities = 83/90 (92%)
 Strand = Plus / Minus

                                                                         
Query: 223   tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 282
             |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 11006 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 10947

                                           
Query: 283   catgaggtacgcatcgatgatctcagacac 312
             ||||||||||||| | ||||||||||||||
Sbjct: 10946 catgaggtacgcagcaatgatctcagacac 10917



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 45    tgatgcagttcactgccactta 66
             ||||||||||||||||||||||
Sbjct: 11214 tgatgcagttcactgccactta 11193
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>dbj|AK069333.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014B03, full
            insert sequence
          Length = 1691

 Score =  123 bits (62), Expect = 4e-25
 Identities = 83/90 (92%)
 Strand = Plus / Minus

                                                                        
Query: 223  tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 282
            |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 1275 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 1216

                                          
Query: 283  catgaggtacgcatcgatgatctcagacac 312
            ||||||||||||| | ||||||||||||||
Sbjct: 1215 catgaggtacgcagcaatgatctcagacac 1186



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 45   tgatgcagttcactgccactta 66
            ||||||||||||||||||||||
Sbjct: 1483 tgatgcagttcactgccactta 1462
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>dbj|AK061646.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B09, full
           insert sequence
          Length = 618

 Score =  123 bits (62), Expect = 4e-25
 Identities = 83/90 (92%)
 Strand = Plus / Minus

                                                                       
Query: 223 tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 282
           |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 350 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 291

                                         
Query: 283 catgaggtacgcatcgatgatctcagacac 312
           ||||||||||||| | ||||||||||||||
Sbjct: 290 catgaggtacgcagcaatgatctcagacac 261



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 45  tgatgcagttcactgccactta 66
           ||||||||||||||||||||||
Sbjct: 558 tgatgcagttcactgccactta 537
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>dbj|AK059435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F10, full
            insert sequence
          Length = 1944

 Score =  123 bits (62), Expect = 4e-25
 Identities = 83/90 (92%)
 Strand = Plus / Minus

                                                                        
Query: 223  tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 282
            |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 1265 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 1206

                                          
Query: 283  catgaggtacgcatcgatgatctcagacac 312
            ||||||||||||| | ||||||||||||||
Sbjct: 1205 catgaggtacgcagcaatgatctcagacac 1176



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 45   tgatgcagttcactgccactta 66
            ||||||||||||||||||||||
Sbjct: 1473 tgatgcagttcactgccactta 1452
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>dbj|AK058287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E02, full
            insert sequence
          Length = 1533

 Score =  123 bits (62), Expect = 4e-25
 Identities = 83/90 (92%)
 Strand = Plus / Minus

                                                                        
Query: 223  tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 282
            |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 1261 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 1202

                                          
Query: 283  catgaggtacgcatcgatgatctcagacac 312
            ||||||||||||| | ||||||||||||||
Sbjct: 1201 catgaggtacgcagcaatgatctcagacac 1172



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 45   tgatgcagttcactgccactta 66
            ||||||||||||||||||||||
Sbjct: 1469 tgatgcagttcactgccactta 1448
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>gb|AY108897.1| Zea mays PCO080076 mRNA sequence
          Length = 1774

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                        
Query: 238  gggctcaaattcggcaaaatcaacggagccagactcgattgggggcatgaggtacgcatc 297
            ||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||  |
Sbjct: 1251 gggctcaaattcggcgaaatcaaccgagccagactcgatggggggcatgaggtaggcggc 1192

                           
Query: 298  gatgatctcagacac 312
            ||||||||| |||||
Sbjct: 1191 gatgatctcggacac 1177
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>ref|NM_115554.2| Arabidopsis thaliana transporter AT3G56950 mRNA, complete cds
          Length = 1481

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                           
Query: 227  tagacaagcttgggctcaaattcggcaaaatcaacggagccagactc 273
            |||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct: 1222 tagacaagattaggctcaaactcggcgaaatcaacagagccagactc 1268
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>ref|NM_115553.2| Arabidopsis thaliana AT103 (DICARBOXYLATE DIIRON 1) AT3G56940 (AT103)
            mRNA, complete cds
          Length = 1602

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 227  tagacaagcttgggctcaaattcggcaaaatcaacggagccagactc 273
            |||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct: 1275 tagacaagattaggctcaaactcggcgaaatcaacagagccagactc 1229
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>emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16
          Length = 107271

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 227   tagacaagcttgggctcaaattcggcaaaatcaacggagccagactc 273
             |||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct: 94188 tagacaagattaggctcaaactcggcgaaatcaacagagccagactc 94142
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>emb|AL138655.1|ATF24I3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24I3
          Length = 91303

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 227  tagacaagcttgggctcaaattcggcaaaatcaacggagccagactc 273
            |||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct: 6275 tagacaagattaggctcaaactcggcgaaatcaacagagccagactc 6229
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>gb|AF236101.1| Arabidopsis thaliana putative dicarboxylate diiron protein (Crd1)
            mRNA, complete cds
          Length = 1407

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 227  tagacaagcttgggctcaaattcggcaaaatcaacggagccagactc 273
            |||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct: 1265 tagacaagattaggctcaaactcggcgaaatcaacagagccagactc 1219
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>gb|U38232.1|ATU38232 Arabidopsis thaliana AT103 mRNA, complete cds
          Length = 1349

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 227  tagacaagcttgggctcaaattcggcaaaatcaacggagccagactc 273
            |||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct: 1241 tagacaagattaggctcaaactcggcgaaatcaacagagccagactc 1195
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>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence
          Length = 96930

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                         
Query: 225   agtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggca 284
             |||| ||||| || || ||||| || ||||||||||| || |||||||||||||| ||||
Sbjct: 95940 agtaaacaagttttggttcaaactctgcaaaatcaacagatccagactcgattggtggca 95881

              
Query: 285   t 285
             |
Sbjct: 95880 t 95880
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>gb|AY322552.1| Triticum aestivum putative fatty acid desaturase TAZIP mRNA,
           partial cds
          Length = 903

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 239 ggctcaaattcggcaaaatcaacggagccagactc 273
           ||||| |||||||| |||||||| |||||||||||
Sbjct: 902 ggctcgaattcggcgaaatcaacagagccagactc 868
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>ref|XM_777570.1| PREDICTED: Strongylocentrotus purpuratus similar to cytochrome
           P450, family 2, subfamily u, polypeptide 1 (LOC577335),
           mRNA
          Length = 1188

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 282 gcatgaggtacgcatcgatga 302
           |||||||||||||||||||||
Sbjct: 535 gcatgaggtacgcatcgatga 515
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>dbj|AP000752.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-689N19, complete
              sequence
          Length = 194140

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 225    agtagacaagcttgggctcaaattc 249
              ||||||||||||||| |||||||||
Sbjct: 149100 agtagacaagcttggtctcaaattc 149076
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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 18      tccgaagcaaaaccggaacac 38
               |||||||||||||||||||||
Sbjct: 2107746 tccgaagcaaaaccggaacac 2107726
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>gb|AC119839.8| Mus musculus chromosome 1, clone RP24-170N13, complete sequence
          Length = 165405

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    atgcatcattatgtttgtaa 189
              ||||||||||||||||||||
Sbjct: 100909 atgcatcattatgtttgtaa 100890
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>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete
            sequence
          Length = 200595

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  atgcatcattatgtttgtaa 189
            ||||||||||||||||||||
Sbjct: 1404 atgcatcattatgtttgtaa 1385
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>emb|AL109897.30|HSJ134M13 Human DNA sequence from clone RP1-134M13 on chromosome 6q13-14.3
             Contains the 3' end of the SUMO-1-specific protease
             (SUSP1) gene, the 5' end of the MYO6 gene for Myosin VI
             (DFNA22 KIAA0389) and one CpG island, complete sequence
          Length = 121764

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   gagcatgatgcatcattatg 182
             ||||||||||||||||||||
Sbjct: 43566 gagcatgatgcatcattatg 43585
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>gb|AC153138.3| Mus musculus BAC clone RP23-442K7 from chromosome 7, complete sequence
          Length = 206648

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    gtaaagataggcagagatga 205
              ||||||||||||||||||||
Sbjct: 141296 gtaaagataggcagagatga 141277
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>gb|AC154207.3| Mus musculus BAC clone RP24-377E1 from chromosome 13, complete sequence
          Length = 181174

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   tgtaaagataggcagagatg 204
             ||||||||||||||||||||
Sbjct: 95539 tgtaaagataggcagagatg 95520
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>gb|AC068722.6|AC068722 Homo sapiens chromosome 15 clone CTD-2306A12 map 15q21.1, complete
             sequence
          Length = 151924

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   agacaagcttgggctcaaat 247
             ||||||||||||||||||||
Sbjct: 64006 agacaagcttgggctcaaat 64025
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>dbj|AK111043.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-B07, full
           insert sequence
          Length = 634

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 tttttcgacaaattcagtag 229
           ||||||||||||||||||||
Sbjct: 631 tttttcgacaaattcagtag 612
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>emb|AL935126.18| Zebrafish DNA sequence from clone CH211-186J3, complete sequence
          Length = 174986

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   atgatgcatcattatgtttg 186
             ||||||||||||||||||||
Sbjct: 72853 atgatgcatcattatgtttg 72872
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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 246     attcggcaaaatcaacggag 265
               ||||||||||||||||||||
Sbjct: 3368423 attcggcaaaatcaacggag 3368442
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>gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome 7, complete sequence
          Length = 217178

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    gtaaagataggcagagatga 205
              ||||||||||||||||||||
Sbjct: 162669 gtaaagataggcagagatga 162688


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,685,670
Number of Sequences: 3902068
Number of extensions: 2685670
Number of successful extensions: 49874
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49790
Number of HSP's gapped (non-prelim): 84
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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