ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet10e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_752485.1| Ustilago maydis 521 hypothetical protein (UM014... 36 3.3
2emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 36 3.3
3gb|BC084980.1| Xenopus laevis hypothetical LOC495453, mRNA (cDNA... 36 3.3

>ref|XM_752485.1| Ustilago maydis 521 hypothetical protein (UM01431.1) partial mRNA
          Length = 4194

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 11   gagcgactgggtgatgcc 28
            ||||||||||||||||||
Sbjct: 2664 gagcgactgggtgatgcc 2647



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 11      gagcgactgggtgatgcc 28
               ||||||||||||||||||
Sbjct: 1040375 gagcgactgggtgatgcc 1040358



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>gb|BC084980.1| Xenopus laevis hypothetical LOC495453, mRNA (cDNA clone MGC:86465
            IMAGE:4202444), complete cds
          Length = 1947

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 18   tgggtgatgccttggatg 35
            ||||||||||||||||||
Sbjct: 1701 tgggtgatgccttggatg 1718


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 152,035
Number of Sequences: 3902068
Number of extensions: 152035
Number of successful extensions: 36372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36353
Number of HSP's gapped (non-prelim): 19
length of query: 35
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 15
effective length of database: 17,155,003,908
effective search space: 257325058620
effective search space used: 257325058620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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