ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet10d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TBX8_CAEEL (Q22292) T-box transcription factor tbx-8 28 5.3
2UL16_VZVD (P09293) Gene 44 protein 28 6.9

>TBX8_CAEEL (Q22292) T-box transcription factor tbx-8|
          Length = 315

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 4   RTEQDEAYTITHELSVSVIVTKSNRRIYHRLHFTL-SPTPVLIY 132
           R +QD+ + + H     +IVTKS R+++ +L + +   TP  +Y
Sbjct: 10  REDQDKLWNLFHYHKNEMIVTKSGRKMFPKLEYVVRGLTPNKLY 53



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>UL16_VZVD (P09293) Gene 44 protein|
          Length = 363

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 66  KEQQKNLPPATFHLIPHTSTYLSYRTDAS 152
           + +Q NLPP TFH+I + +  +SY   A+
Sbjct: 84  RPRQMNLPPKTFHVIVNFNYEVSYAMTAT 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,088,309
Number of Sequences: 219361
Number of extensions: 278031
Number of successful extensions: 1200
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 80,573,946
effective HSP length: 26
effective length of database: 74,870,560
effective search space used: 1796893440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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