| Clone Name | rbaet10d11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA) Length = 1174 Score = 67.9 bits (34), Expect = 8e-09 Identities = 72/82 (87%), Gaps = 2/82 (2%) Strand = Plus / Minus Query: 60 cgtgacaaagagcaa-cagaagaatctaccaccggctacatttcaccttat-cccccaca 117 |||||||| |||||| ||||||||||||||||| ||| |||||||| |||| ||||| || Sbjct: 1112 cgtgacaaggagcaaacagaagaatctaccacccgctccatttcacattatcccccctca 1053 Query: 118 ccagtacttatttatcatacag 139 | || |||||||||||||||| Sbjct: 1052 ctggtccttatttatcatacag 1031
>emb|CR391965.8| Zebrafish DNA sequence from clone CH211-124O16 in linkage group 24, complete sequence Length = 157418 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 tatcccccacaccagtactta 127 ||||||||||||||||||||| Sbjct: 150615 tatcccccacaccagtactta 150635
>emb|Z49556.1|SCYJR056C S.cerevisiae chromosome X reading frame ORF YJR056c Length = 4795 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 tgagcgtgagcgtgatcgtga 64 ||||||||||||||||||||| Sbjct: 2631 tgagcgtgagcgtgatcgtga 2611
>gb|L47993.1|YSCORFSAA Saccharomyces cerevisiae ORF genes, complete cds Length = 61989 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 tgagcgtgagcgtgatcgtga 64 ||||||||||||||||||||| Sbjct: 6149 tgagcgtgagcgtgatcgtga 6129
>emb|BX571829.7| Zebrafish DNA sequence from clone DKEY-256M7 in linkage group 12, complete sequence Length = 196942 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cggctacatttcaccttatc 110 |||||||||||||||||||| Sbjct: 174524 cggctacatttcaccttatc 174505
>gb|AC092360.2| Homo sapiens chromosome 5 clone RP11-346B2, complete sequence Length = 130737 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 caccagtacttatttatcat 135 |||||||||||||||||||| Sbjct: 116528 caccagtacttatttatcat 116547
>ref|NM_000068.2| Homo sapiens calcium channel, voltage-dependent, P/Q type, alpha 1A subunit (CACNA1A), transcript variant 1, mRNA Length = 7807 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 aaagagcaacagaagaatc 84 ||||||||||||||||||| Sbjct: 2566 aaagagcaacagaagaatc 2584
>ref|NM_023035.1| Homo sapiens calcium channel, voltage-dependent, P/Q type, alpha 1A subunit (CACNA1A), transcript variant 2, mRNA Length = 7812 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 aaagagcaacagaagaatc 84 ||||||||||||||||||| Sbjct: 2566 aaagagcaacagaagaatc 2584
>ref|XM_654058.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1546.2), mRNA Length = 4818 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 44 tgagcgtgagcgtgatcgtgaca 66 ||||||||||||||| ||||||| Sbjct: 432 tgagcgtgagcgtgagcgtgaca 454
>gb|AC078937.1| Homo sapiens BAC clone GS1-113G16 from 7, complete sequence Length = 62035 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 atgaggcatatactattac 35 ||||||||||||||||||| Sbjct: 53605 atgaggcatatactattac 53587
>ref|XM_446163.1| Candida glabrata CBS138, CAGL0F04411g partial mRNA Length = 639 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 acaaagagcaacagaagaa 82 ||||||||||||||||||| Sbjct: 74 acaaagagcaacagaagaa 92
>emb|CR847506.8| Zebrafish DNA sequence from clone CH211-225N13 in linkage group 11, complete sequence Length = 199426 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 42 attgagcgtgagcgtgatcgtga 64 ||||||||||||||||| ||||| Sbjct: 99945 attgagcgtgagcgtgagcgtga 99923
>emb|BX927353.7| Zebrafish DNA sequence from clone CH211-83F14 in linkage group 2, complete sequence Length = 94558 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 42 attgagcgtgagcgtgatcgtga 64 ||||||||||||||||| ||||| Sbjct: 7198 attgagcgtgagcgtgagcgtga 7220
>ref|XM_533458.2| PREDICTED: Canis familiaris RNA binding motif protein 16 (KIAA1116), mRNA Length = 4690 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 ttgagcgtgagcgtgatcg 61 ||||||||||||||||||| Sbjct: 1324 ttgagcgtgagcgtgatcg 1306
>gb|AC142329.1| Pan troglodytes BAC clone RP43-25D8 from 11, complete sequence Length = 188643 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 126 tatttatcatacaggacag 144 ||||||||||||||||||| Sbjct: 82511 tatttatcatacaggacag 82493
>emb|CR383660.9| Zebrafish DNA sequence from clone DKEY-1H22 in linkage group 14, complete sequence Length = 139631 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 42 attgagcgtgagcgtgatcgtga 64 ||||||||||||||||| ||||| Sbjct: 40789 attgagcgtgagcgtgagcgtga 40811
>gb|AC165175.2| Zea mays clone ZMMBBb-136N21, complete sequence Length = 129274 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 agatgaggcatatactatt 33 ||||||||||||||||||| Sbjct: 25142 agatgaggcatatactatt 25160
>emb|AL354707.17| Human DNA sequence from clone RP11-390F4 on chromosome 9 Contains the 5' end of a ring finger protein 2 (RNF2) pseudogene, the 3' end of a novel gene, a 60S ribosomal protein L35a (RPL35A) pseudogene, three novel genes, a gene similar to small nuclear ribonucleoprotein polypeptide E (SNRPE), the 5' end of the JMJD2C gene for jumonji domain containing 2C, a chromosome 20 open reading frame 45 (C20orf45) pseudogene and six CpG islands, complete sequence Length = 170970 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 105 cttatcccccacaccagta 123 ||||||||||||||||||| Sbjct: 151123 cttatcccccacaccagta 151141
>gb|AE008889.1| Salmonella typhimurium LT2, section 193 of 220 of the complete genome Length = 20504 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 58 atcgtgacaaagagcaacagaag 80 |||||||||| |||||||||||| Sbjct: 14241 atcgtgacaatgagcaacagaag 14263
>emb|CR380952.1| Candida glabrata strain CBS138 chromosome F complete sequence Length = 927101 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 acaaagagcaacagaagaa 82 ||||||||||||||||||| Sbjct: 441787 acaaagagcaacagaagaa 441769
>emb|AL929301.6| Zebrafish DNA sequence from clone BUSM1-SL7 Contains two genes for novel serine proteases, a novel serine protease pseudogene, three genes similar to vertebrate PIM1 (pim-1 oncogene), a putative novel gene and a CpG island, complete sequence Length = 64032 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 42 attgagcgtgagcgtgatcgtga 64 ||||||||||||||||| ||||| Sbjct: 39745 attgagcgtgagcgtgagcgtga 39723
>emb|AL627279.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 15/20 Length = 264050 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 58 atcgtgacaaagagcaacagaag 80 |||||||||| |||||||||||| Sbjct: 212195 atcgtgacaatgagcaacagaag 212173
>emb|BX548054.19| Zebrafish DNA sequence from clone CH211-237N4 in linkage group 14, complete sequence Length = 128658 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 42 attgagcgtgagcgtgatcgtga 64 ||||||||||||||||| ||||| Sbjct: 77130 attgagcgtgagcgtgagcgtga 77108
>emb|X99897.1|HSPQCCA1 H.sapiens mRNA for P/Q-type calcium channel alpha1 subunit Length = 7446 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 aaagagcaacagaagaatc 84 ||||||||||||||||||| Sbjct: 2559 aaagagcaacagaagaatc 2577
>gb|AF004884.1|AF004884 Homo sapiens neuronal calcium channel alpha 1A subunit isoform A-1 mRNA, complete cds Length = 7808 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 aaagagcaacagaagaatc 84 ||||||||||||||||||| Sbjct: 2529 aaagagcaacagaagaatc 2547
>gb|AF004883.1|AF004883 Homo sapiens neuronal calcium channel alpha 1A subunit isoform 1A-2 mRNA, complete cds Length = 7791 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 aaagagcaacagaagaatc 84 ||||||||||||||||||| Sbjct: 2529 aaagagcaacagaagaatc 2547
>emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19, complete sequence Length = 148298 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 42 attgagcgtgagcgtgatcgtga 64 ||||||||||||||||| ||||| Sbjct: 5736 attgagcgtgagcgtgagcgtga 5714
>gb|BC063853.1| Homo sapiens acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase), mRNA (cDNA clone MGC:75126 IMAGE:6182007), complete cds Length = 2276 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 126 tatttatcatacaggacag 144 ||||||||||||||||||| Sbjct: 1644 tatttatcatacaggacag 1626
>emb|BX324225.7| Zebrafish DNA sequence from clone DKEY-180I22 in linkage group 21, complete sequence Length = 207125 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 42 attgagcgtgagcgtgatcgtga 64 ||||||||||||||||| ||||| Sbjct: 177398 attgagcgtgagcgtgagcgtga 177376
>gb|AC026805.5|AC026805 Homo sapiens chromosome 19 clone LLNLR-268A1, complete sequence Length = 40639 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 aaagagcaacagaagaatc 84 ||||||||||||||||||| Sbjct: 17437 aaagagcaacagaagaatc 17419
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 58 atcgtgacaaagagcaacagaag 80 |||||||||| |||||||||||| Sbjct: 4047271 atcgtgacaatgagcaacagaag 4047293
>emb|BX005128.4| Zebrafish DNA sequence from clone CH211-129H14 in linkage group 17, complete sequence Length = 152345 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 42 attgagcgtgagcgtgatcgtga 64 ||||||||||||||||| ||||| Sbjct: 12591 attgagcgtgagcgtgagcgtga 12613
>dbj|BS000111.1| Pan troglodytes chromosome 22 clone:PTB-093K04, map 22, complete sequences Length = 184428 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 atatactattacacacgaa 42 ||||||||||||||||||| Sbjct: 4072 atatactattacacacgaa 4090
>dbj|BS000110.1| Pan troglodytes chromosome 22 clone:PTB-090P24, map 22, complete sequences Length = 157686 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 atatactattacacacgaa 42 ||||||||||||||||||| Sbjct: 132084 atatactattacacacgaa 132102
>ref|XM_560555.1| Anopheles gambiae str. PEST ENSANGP00000025790 (ENSANGG00000025127), partial mRNA Length = 1593 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 caacagaagaatctaccac 90 ||||||||||||||||||| Sbjct: 620 caacagaagaatctaccac 638 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 caacagaagaatctaccac 90 ||||||||||||||||||| Sbjct: 527 caacagaagaatctaccac 545 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 caacagaagaatctaccac 90 ||||||||||||||||||| Sbjct: 71 caacagaagaatctaccac 89
>ref|XM_560625.1| Anopheles gambiae str. PEST ENSANGP00000027443 (ENSANGG00000023491), partial mRNA Length = 1023 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 caacagaagaatctaccac 90 ||||||||||||||||||| Sbjct: 332 caacagaagaatctaccac 350
>ref|XM_555219.1| Anopheles gambiae str. PEST ENSANGP00000016373 (ENSANGG00000013884), partial mRNA Length = 807 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 caacagaagaatctaccac 90 ||||||||||||||||||| Sbjct: 656 caacagaagaatctaccac 674 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 caacagaagaatctaccac 90 ||||||||||||||||||| Sbjct: 86 caacagaagaatctaccac 104
>emb|BX571881.6| Zebrafish DNA sequence from clone DKEY-251M4 in linkage group 18, complete sequence Length = 100776 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 42 attgagcgtgagcgtgatcgtga 64 ||||||||||||||||| ||||| Sbjct: 77232 attgagcgtgagcgtgagcgtga 77254
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 58 atcgtgacaaagagcaacagaag 80 |||||||||| |||||||||||| Sbjct: 3661858 atcgtgacaatgagcaacagaag 3661836
>dbj|AP002433.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-144G7, complete sequence Length = 165164 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 126 tatttatcatacaggacag 144 ||||||||||||||||||| Sbjct: 127911 tatttatcatacaggacag 127893
>dbj|AP001710.1| Homo sapiens genomic DNA, chromosome 21q, section 54/105 Length = 340000 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 atatactattacacacgaa 42 ||||||||||||||||||| Sbjct: 167725 atatactattacacacgaa 167743
>dbj|AP000247.2| Homo sapiens genomic DNA, chromosome 21q, clone:RP5-871G18, complete sequence Length = 113919 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 atatactattacacacgaa 42 ||||||||||||||||||| Sbjct: 22271 atatactattacacacgaa 22289
>gb|U79666.1|HSU79666 Homo sapiens alpha1A-voltage-dependent calcium channel mRNA, splice form BI-1-Vi-GGCAG, complete cds Length = 7827 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 aaagagcaacagaagaatc 84 ||||||||||||||||||| Sbjct: 2501 aaagagcaacagaagaatc 2519
>emb|Z80130.1|HSCAC19 H.sapiens CACNL1A4 gene, exon 19 Length = 1113 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 aaagagcaacagaagaatc 84 ||||||||||||||||||| Sbjct: 211 aaagagcaacagaagaatc 229
>dbj|AP000208.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone f43D11-119B8, segment 6/12, complete sequence Length = 100000 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 atatactattacacacgaa 42 ||||||||||||||||||| Sbjct: 41713 atatactattacacacgaa 41731
>dbj|AB035727.2| Homo sapiens CACNA1A mRNA for alpha1A-voltage-dependent calcium channel, complete cds, isolate:TMDN-CNT-001 Length = 7521 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 aaagagcaacagaagaatc 84 ||||||||||||||||||| Sbjct: 2281 aaagagcaacagaagaatc 2299
>dbj|AB035726.1| Homo sapiens CACNA1A mRNA for alpha1A-voltage-dependent calcium channel, partial cds, isolate:TMDN-SCA6-001 Length = 7450 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 aaagagcaacagaagaatc 84 ||||||||||||||||||| Sbjct: 2319 aaagagcaacagaagaatc 2337 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,146,961 Number of Sequences: 3902068 Number of extensions: 1146961 Number of successful extensions: 83976 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83831 Number of HSP's gapped (non-prelim): 134 length of query: 153 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 132 effective length of database: 17,151,101,840 effective search space: 2263945442880 effective search space used: 2263945442880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)