| Clone Name | rbaet10c09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|BX324200.5| Mouse DNA sequence from clone RP23-382H2 on chromosome 2, complete sequence Length = 180530 Score = 46.1 bits (23), Expect = 0.053 Identities = 26/27 (96%) Strand = Plus / Plus Query: 47 tgaacattctggcagatggtggctaaa 73 |||| |||||||||||||||||||||| Sbjct: 101240 tgaaaattctggcagatggtggctaaa 101266
>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence Length = 194361 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 aaaaattatattagatgctat 148 ||||||||||||||||||||| Sbjct: 64047 aaaaattatattagatgctat 64067
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 aaaaattatattagatgctat 148 ||||||||||||||||||||| Sbjct: 20186312 aaaaattatattagatgctat 20186332
>gb|AC009299.5| Homo sapiens BAC clone RP11-26B22 from 2, complete sequence Length = 169697 Score = 42.1 bits (21), Expect = 0.82 Identities = 24/25 (96%) Strand = Plus / Plus Query: 17 accaattaatggaaaaggcagaatt 41 |||| |||||||||||||||||||| Sbjct: 117784 accatttaatggaaaaggcagaatt 117808
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 aaaaattatattagatgctat 148 ||||||||||||||||||||| Sbjct: 20197588 aaaaattatattagatgctat 20197608
>gb|AC153488.1| Tribolium castaneum BAC T.cast_C24H10 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 40580 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 cattgagtaaaaattatatt 139 |||||||||||||||||||| Sbjct: 2149 cattgagtaaaaattatatt 2130
>gb|AC152927.1| Tribolium castaneum BAC T.cast_C19N19 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 137018 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 cattgagtaaaaattatatt 139 |||||||||||||||||||| Sbjct: 51659 cattgagtaaaaattatatt 51678
>gb|AY809754.1| Schistosoma japonicum SJCHGC05565 protein mRNA, partial cds Length = 1302 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 tgtgctttctctcaattggg 226 |||||||||||||||||||| Sbjct: 718 tgtgctttctctcaattggg 737
>gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, complete sequence Length = 181674 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 acatcaaagtttttagcgtcaatt 98 ||||||||||||||||| |||||| Sbjct: 171054 acatcaaagtttttagcatcaatt 171077
>gb|AY525610.1| Homo sapiens progesterone receptor (PGR) gene, complete cds Length = 96124 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 attgcctttgaacattctgg 58 |||||||||||||||||||| Sbjct: 51061 attgcctttgaacattctgg 51080
>gb|AC125464.4| Mus musculus BAC clone RP23-113C9 from 14, complete sequence Length = 203804 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 acatcaaagtttttagcgtcaatt 98 ||||||||||||||||| |||||| Sbjct: 152335 acatcaaagtttttagcatcaatt 152312
>ref|XM_961171.1| Plasmodium falciparum 3D7 hypothetical protein (PFF1365c) partial mRNA Length = 30864 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tataaatttatgcaaccaat 22 |||||||||||||||||||| Sbjct: 21060 tataaatttatgcaaccaat 21079
>emb|AL596114.10| Human DNA sequence from clone RP11-274A8 on chromosome 13 Containd the 3' end of a novel gene (KIAA0774), a novel gene, the SLC7A1 gene for solute carrier family 7 (cationic amino acid transporter, y+ system), member 1, and a CpG island, complete sequence Length = 173191 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 actttgtgctttctctcaat 222 |||||||||||||||||||| Sbjct: 46767 actttgtgctttctctcaat 46786
>emb|AL158195.11| Human DNA sequence from clone RP11-48H1 on chromosome 13 Contains part of the DLEU1 gene for deleted in lymphocytic leukemia 1 (BCMS LEU1), complete sequence Length = 123209 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tttagatttgcattgagtaa 129 |||||||||||||||||||| Sbjct: 60700 tttagatttgcattgagtaa 60719
>emb|CR382401.1| Plasmodium falciparum chromosome 6, complete sequence; segment 4/5 Length = 337203 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tataaatttatgcaaccaat 22 |||||||||||||||||||| Sbjct: 87130 tataaatttatgcaaccaat 87111
>gb|AC068515.6| Homo sapiens, clone RP11-61O11, complete sequence Length = 180917 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ttaatggaaaaggcagaatt 41 |||||||||||||||||||| Sbjct: 108972 ttaatggaaaaggcagaatt 108991
>gb|AC016113.9| Homo sapiens, clone RP11-26P22, complete sequence Length = 185419 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 gtcaatttgtccaacttatt 111 |||||||||||||||||||| Sbjct: 48639 gtcaatttgtccaacttatt 48620
>gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section 2 of 2 Length = 440917 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tttagatttgcattgagtaa 129 |||||||||||||||||||| Sbjct: 139404 tttagatttgcattgagtaa 139423
>gb|AC005949.12| Homo sapiens chromosome 13 clone 468p13 map 13q14, complete sequence Length = 143107 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tttagatttgcattgagtaa 129 |||||||||||||||||||| Sbjct: 80382 tttagatttgcattgagtaa 80363
>gb|AC005948.14| Homo sapiens chromosome 13 clone 460f10 map 13q14, complete sequence Length = 154065 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tttagatttgcattgagtaa 129 |||||||||||||||||||| Sbjct: 30539 tttagatttgcattgagtaa 30520
>gb|AY971672.1| Wuchereria bancrofti PMR1 mRNA, partial sequence Length = 568 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ttttgagtactttgtgcttt 214 |||||||||||||||||||| Sbjct: 317 ttttgagtactttgtgcttt 336
>dbj|AP001533.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-788M5, complete sequence Length = 207183 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 attgcctttgaacattctgg 58 |||||||||||||||||||| Sbjct: 63464 attgcctttgaacattctgg 63445
>gb|L42008.1|BACXTAB Bacillus sp. xylose transport ATP-binding protein gene, 3' end of cds, xylose transport permease, xylose isomerase gene, complete cds, xylulose kinase gene, 5' end of cds Length = 4363 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 caatttgtccaacttattta 113 |||||||||||||||||||| Sbjct: 801 caatttgtccaacttattta 820 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,947,008 Number of Sequences: 3902068 Number of extensions: 2947008 Number of successful extensions: 58415 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58363 Number of HSP's gapped (non-prelim): 50 length of query: 251 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 229 effective length of database: 17,147,199,772 effective search space: 3926708747788 effective search space used: 3926708747788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)