ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet10c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX324200.5| Mouse DNA sequence from clone RP23-382H2 on chro... 46 0.053
2gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 geno... 42 0.82
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.82
4gb|AC009299.5| Homo sapiens BAC clone RP11-26B22 from 2, complet... 42 0.82
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.82
6gb|AC153488.1| Tribolium castaneum BAC T.cast_C24H10 (Clemson U... 40 3.2
7gb|AC152927.1| Tribolium castaneum BAC T.cast_C19N19 (Clemson U... 40 3.2
8gb|AY809754.1| Schistosoma japonicum SJCHGC05565 protein mRNA, p... 40 3.2
9gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, co... 40 3.2
10gb|AY525610.1| Homo sapiens progesterone receptor (PGR) gene, co... 40 3.2
11gb|AC125464.4| Mus musculus BAC clone RP23-113C9 from 14, comple... 40 3.2
12ref|XM_961171.1| Plasmodium falciparum 3D7 hypothetical protein ... 40 3.2
13emb|AL596114.10| Human DNA sequence from clone RP11-274A8 on chr... 40 3.2
14emb|AL158195.11| Human DNA sequence from clone RP11-48H1 on chro... 40 3.2
15emb|CR382401.1| Plasmodium falciparum chromosome 6, complete seq... 40 3.2
16gb|AC068515.6| Homo sapiens, clone RP11-61O11, complete sequence 40 3.2
17gb|AC016113.9| Homo sapiens, clone RP11-26P22, complete sequence 40 3.2
18gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic le... 40 3.2
19gb|AC005949.12| Homo sapiens chromosome 13 clone 468p13 map 13q1... 40 3.2
20gb|AC005948.14| Homo sapiens chromosome 13 clone 460f10 map 13q1... 40 3.2
21gb|AY971672.1| Wuchereria bancrofti PMR1 mRNA, partial sequence 40 3.2
22dbj|AP001533.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 3.2
23gb|L42008.1|BACXTAB Bacillus sp. xylose transport ATP-binding pr... 40 3.2

>emb|BX324200.5| Mouse DNA sequence from clone RP23-382H2 on chromosome 2, complete
              sequence
          Length = 180530

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 47     tgaacattctggcagatggtggctaaa 73
              |||| ||||||||||||||||||||||
Sbjct: 101240 tgaaaattctggcagatggtggctaaa 101266



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>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete
             sequence
          Length = 194361

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   aaaaattatattagatgctat 148
             |||||||||||||||||||||
Sbjct: 64047 aaaaattatattagatgctat 64067



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 128      aaaaattatattagatgctat 148
                |||||||||||||||||||||
Sbjct: 20186312 aaaaattatattagatgctat 20186332



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>gb|AC009299.5| Homo sapiens BAC clone RP11-26B22 from 2, complete sequence
          Length = 169697

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 17     accaattaatggaaaaggcagaatt 41
              |||| ||||||||||||||||||||
Sbjct: 117784 accatttaatggaaaaggcagaatt 117808



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 128      aaaaattatattagatgctat 148
                |||||||||||||||||||||
Sbjct: 20197588 aaaaattatattagatgctat 20197608



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>gb|AC153488.1| Tribolium castaneum  BAC T.cast_C24H10 (Clemson University Genomics
            Institute Tribolium castaneum BAC Library (Red Flour
            Beetle)) complete sequence
          Length = 40580

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  cattgagtaaaaattatatt 139
            ||||||||||||||||||||
Sbjct: 2149 cattgagtaaaaattatatt 2130



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>gb|AC152927.1| Tribolium castaneum  BAC T.cast_C19N19 (Clemson University Genomics
             Institute Tribolium castaneum BAC Library (Red Flour
             Beetle)) complete sequence
          Length = 137018

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   cattgagtaaaaattatatt 139
             ||||||||||||||||||||
Sbjct: 51659 cattgagtaaaaattatatt 51678



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>gb|AY809754.1| Schistosoma japonicum SJCHGC05565 protein mRNA, partial cds
          Length = 1302

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 tgtgctttctctcaattggg 226
           ||||||||||||||||||||
Sbjct: 718 tgtgctttctctcaattggg 737



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>gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, complete sequence
          Length = 181674

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     acatcaaagtttttagcgtcaatt 98
              ||||||||||||||||| ||||||
Sbjct: 171054 acatcaaagtttttagcatcaatt 171077



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>gb|AY525610.1| Homo sapiens progesterone receptor (PGR) gene, complete cds
          Length = 96124

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    attgcctttgaacattctgg 58
             ||||||||||||||||||||
Sbjct: 51061 attgcctttgaacattctgg 51080



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>gb|AC125464.4| Mus musculus BAC clone RP23-113C9 from 14, complete sequence
          Length = 203804

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 75     acatcaaagtttttagcgtcaatt 98
              ||||||||||||||||| ||||||
Sbjct: 152335 acatcaaagtttttagcatcaatt 152312



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>ref|XM_961171.1| Plasmodium falciparum 3D7 hypothetical protein (PFF1365c) partial mRNA
          Length = 30864

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     tataaatttatgcaaccaat 22
             ||||||||||||||||||||
Sbjct: 21060 tataaatttatgcaaccaat 21079



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>emb|AL596114.10| Human DNA sequence from clone RP11-274A8 on chromosome 13 Containd the
             3' end of a novel gene (KIAA0774), a novel gene, the
             SLC7A1 gene for solute carrier family 7 (cationic amino
             acid transporter, y+ system), member 1, and a CpG island,
             complete sequence
          Length = 173191

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   actttgtgctttctctcaat 222
             ||||||||||||||||||||
Sbjct: 46767 actttgtgctttctctcaat 46786



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>emb|AL158195.11| Human DNA sequence from clone RP11-48H1 on chromosome 13 Contains part
             of the DLEU1 gene for deleted in lymphocytic leukemia 1
             (BCMS LEU1), complete sequence
          Length = 123209

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   tttagatttgcattgagtaa 129
             ||||||||||||||||||||
Sbjct: 60700 tttagatttgcattgagtaa 60719



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>emb|CR382401.1| Plasmodium falciparum chromosome 6, complete sequence; segment 4/5
          Length = 337203

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     tataaatttatgcaaccaat 22
             ||||||||||||||||||||
Sbjct: 87130 tataaatttatgcaaccaat 87111



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>gb|AC068515.6| Homo sapiens, clone RP11-61O11, complete sequence
          Length = 180917

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ttaatggaaaaggcagaatt 41
              ||||||||||||||||||||
Sbjct: 108972 ttaatggaaaaggcagaatt 108991



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>gb|AC016113.9| Homo sapiens, clone RP11-26P22, complete sequence
          Length = 185419

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    gtcaatttgtccaacttatt 111
             ||||||||||||||||||||
Sbjct: 48639 gtcaatttgtccaacttatt 48620



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>gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section
              2 of 2
          Length = 440917

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    tttagatttgcattgagtaa 129
              ||||||||||||||||||||
Sbjct: 139404 tttagatttgcattgagtaa 139423



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>gb|AC005949.12| Homo sapiens chromosome 13 clone 468p13 map 13q14, complete sequence
          Length = 143107

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   tttagatttgcattgagtaa 129
             ||||||||||||||||||||
Sbjct: 80382 tttagatttgcattgagtaa 80363



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>gb|AC005948.14| Homo sapiens chromosome 13 clone 460f10 map 13q14, complete sequence
          Length = 154065

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   tttagatttgcattgagtaa 129
             ||||||||||||||||||||
Sbjct: 30539 tttagatttgcattgagtaa 30520



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>gb|AY971672.1| Wuchereria bancrofti PMR1 mRNA, partial sequence
          Length = 568

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 ttttgagtactttgtgcttt 214
           ||||||||||||||||||||
Sbjct: 317 ttttgagtactttgtgcttt 336



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>dbj|AP001533.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-788M5, complete
             sequence
          Length = 207183

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    attgcctttgaacattctgg 58
             ||||||||||||||||||||
Sbjct: 63464 attgcctttgaacattctgg 63445



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>gb|L42008.1|BACXTAB Bacillus sp. xylose transport ATP-binding protein gene, 3' end of
           cds, xylose transport permease, xylose isomerase gene,
           complete cds, xylulose kinase gene, 5' end of cds
          Length = 4363

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  caatttgtccaacttattta 113
           ||||||||||||||||||||
Sbjct: 801 caatttgtccaacttattta 820


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,947,008
Number of Sequences: 3902068
Number of extensions: 2947008
Number of successful extensions: 58415
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58363
Number of HSP's gapped (non-prelim): 50
length of query: 251
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 229
effective length of database: 17,147,199,772
effective search space: 3926708747788
effective search space used: 3926708747788
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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