ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet10c04 |
|---|---|
| Clone Library Name | barley_pub |
>Q300_MOUSE (Q02722) Protein Q300| Length = 77 Score = 32.3 bits (72), Expect = 0.31 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = -3 Query: 174 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICMIDP 31 Y+CV C+CVC C + +S G+L S + C + + +P Sbjct: 26 YVCVCVCVCVCVCVCTLTCMCKSGGNLGCSSSGAIHCGVFVCVLIFEP 73
>NU5M_ANOAR (P51899) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) (Fragment) Length = 384 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -3 Query: 174 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 40 ++C GS I S IR MGSL + P + SCFN+A + + Sbjct: 313 FMCAGSIIHNMKNS----QDIRMMGSLSMSMPLTCSCFNVANLAL 353
>NU5M_LOCMI (Q36428) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 572 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = -3 Query: 174 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 40 ++C GS I S IR MGS++ P + CFN++++C+ Sbjct: 307 FMCAGSMIHNLRDS----QDIRFMGSIIHFMPLTSICFNVSSLCL 347
>NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 580 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -3 Query: 174 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 40 ++C GS I S IR MGSL + P + SCFN+A + + Sbjct: 313 FMCAGSIIHNMKNS----QDIRMMGSLSMSMPLTCSCFNVANLAL 353
>NU5M_ANOQU (P33510) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 576 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -3 Query: 174 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 40 ++C GS I S IR MGSL + P + SCFN+A + + Sbjct: 309 FMCAGSIIHNMKNS----QDIRMMGSLSMSMPLTCSCFNVANLAL 349
>FPRB_MYCTU (P65528) Probable ferredoxin/ferredoxin--NADP reductase (EC| 1.18.1.2) (FNR) Length = 575 Score = 28.9 bits (63), Expect = 3.4 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -3 Query: 297 VIHVMCMQD*SNGDLC---CVHPSKEKAAFATSRQ-FSWPLQWSCYLCVGSCICVCAQSC 130 VI C D S C C+HP+ ++ FATS + P+ +C C G+C+ C S Sbjct: 4 VITQSCCNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVTACPVSA 60 Query: 129 V 127 + Sbjct: 61 I 61
>FPRB_MYCBO (P65529) Probable ferredoxin/ferredoxin--NADP reductase (EC| 1.18.1.2) (FNR) Length = 575 Score = 28.9 bits (63), Expect = 3.4 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -3 Query: 297 VIHVMCMQD*SNGDLC---CVHPSKEKAAFATSRQ-FSWPLQWSCYLCVGSCICVCAQSC 130 VI C D S C C+HP+ ++ FATS + P+ +C C G+C+ C S Sbjct: 4 VITQSCCNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVTACPVSA 60 Query: 129 V 127 + Sbjct: 61 I 61
>FAD6E_ARATH (P46313) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Delta-12 desaturase) Length = 383 Score = 28.9 bits (63), Expect = 3.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -3 Query: 198 SWPLQWSCYLCVGSCICVCAQSC 130 +WPL W+C CV + I V A C Sbjct: 85 AWPLYWACQGCVLTGIWVIAHEC 107
>ATC3_SCHPO (P22189) Calcium-transporting ATPase 3 (EC 3.6.3.8)| Length = 1037 Score = 28.9 bits (63), Expect = 3.4 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Frame = +2 Query: 11 WIEGGDVGSIIHM------VAKLKQEKECGLIKT-SDPMDRITTHGTHDWAHTHMQLP 163 WIEGG + +II + + + K EK ++T + PM +T D +H+ +P Sbjct: 84 WIEGGVISAIIVLNITVGFIQEYKAEKTMDSLRTLASPMAHVTRSSKTDAIDSHLLVP 141
>RA54B_CHICK (Q9DG67) DNA repair and recombination protein RAD54B (EC 3.6.1.-)| (RAD54 homolog B) Length = 918 Score = 28.9 bits (63), Expect = 3.4 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = -3 Query: 213 TSRQFSWPLQWSCYLCVGSCICVCAQSCVPCVVIRSMGSLVLISPH-SFSC-FNLATICM 40 T +QF P++ +C I + QSC P SLV+ P+ S C FN A + + Sbjct: 231 TMKQFCKPIKSACQPSTKENILLNPQSCKPRHNPNDTNSLVMPRPNASHQCMFNKAGLPV 290 Query: 39 IDPTSPPSIQIN 4 +D P I N Sbjct: 291 VDVVVDPYIANN 302
>VHUB_METVO (Q00388) Polyferredoxin protein vhuB| Length = 398 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = -3 Query: 180 SCYLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATIC 43 +C LC CA +C ++ + G L+ S C N AT C Sbjct: 33 TCTLCFS-----CASACPTGALVENNGKLIYNSSKCIKCGNCATAC 73
>SCNNG_HUMAN (P51170) Amiloride-sensitive sodium channel gamma-subunit| (Epithelial Na+ channel gamma subunit) (Gamma ENaC) (Nonvoltage-gated sodium channel 1 gamma subunit) (SCNEG) (Gamma NaCH) Length = 649 Score = 28.1 bits (61), Expect = 5.9 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Frame = +2 Query: 41 IHMVAKLKQEKECGLIKTSDPMDRITTHGTH----DWAHTHMQLPTHK*HDHCSGQLNCR 208 +H + K ++CG + S P+ + + +W + + QL H+ +L C+ Sbjct: 395 LHSCFQTKMVEKCGCAQYSQPLPPAANYCNYQQHPNWMYCYYQL--HR--AFVQEELGCQ 450 Query: 209 EVAKAAFSLDGWT 247 V K A S WT Sbjct: 451 SVCKEACSFKEWT 463
>HEPC1_SALSA (Q801Y3) Hepcidin-1 precursor| Length = 86 Score = 28.1 bits (61), Expect = 5.9 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -2 Query: 163 RQLHMRMCPVMRAVCCNSVHGIAC 92 RQ+H+ +C +CCN H I C Sbjct: 61 RQIHLSLC----GLCCNCCHNIGC 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,105,169 Number of Sequences: 219361 Number of extensions: 836448 Number of successful extensions: 2186 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2178 length of database: 80,573,946 effective HSP length: 77 effective length of database: 63,683,149 effective search space used: 1528395576 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
