>HD2B_MAIZE (Q9M4U5) Histone deacetylase 2b (HD2b) (Zm-HD2b)|
          Length = 303

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 27/36 (75%), Positives = 30/36 (83%), Gaps = 4/36 (11%)
 Frame = -2

Query: 444 GKTPATSDK----SPKSGGSVACKSCTKTFNSEVAL 349
           GKTPA +DK    SPKSGGSV CKSC+KTFNSE+AL
Sbjct: 257 GKTPANNDKLTEKSPKSGGSVPCKSCSKTFNSEMAL 292

>HD2A_MAIZE (O24591) Histone deacetylase 2a (HD2a) (Zm-HD2a) (Nucleolar histone|
           deacetylase HD2-p39)
          Length = 307

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 7/39 (17%)
 Frame = -2

Query: 444 GKTPATSDKS-------PKSGGSVACKSCTKTFNSEVAL 349
           GKT   +DKS       PKSGGSV CK C+K+F SE AL
Sbjct: 253 GKTIVNNDKSVKSPKSAPKSGGSVPCKPCSKSFISETAL 291

>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)|
          Length = 294

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = -2

Query: 444 GKTPATS--DKSPKSGGSVACKSCTKTFNSEVALAS 343
           G T  TS   ++PKS G+  CKSCT+TF SE+ L S
Sbjct: 249 GSTGETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQS 284

>HD2A_SOYBN (Q8LJS2) Histone deacetylase 2a (HD2a) (Nucleolar histone|
           deacetylase HD2-p39)
          Length = 295

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 453 KKVGKTP-ATSDKSPKSGGSVACKSCTKTFNSEVAL 349
           KK GKTP +T  ++P S G ++C SC K+F +E  L
Sbjct: 249 KKGGKTPNSTKGQTPNSAGQLSCASCKKSFTNEAGL 284

>HD2A_ARATH (Q9FVE6) Histone deacetylase 2a (HD-tuins protein 1)|
          Length = 245

 Score = 36.6 bits (83), Expect = 0.030
 Identities = 20/37 (54%), Positives = 24/37 (64%)
 Frame = -2

Query: 453 KKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALAS 343
           KK GK    +++SPKS   V+C SC KTFNS  AL S
Sbjct: 202 KKGGKA---ANQSPKSASQVSCGSCKKTFNSGNALES 235

>HD2A_SOLCH (Q6V9I6) Histone deacetylase 2a (HD2a) (ScHD2a)|
          Length = 269

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 426 SDKSPKSGGSVACKSCTKTFNSEVALAS 343
           + K+PKS GS  CK C ++F SE AL S
Sbjct: 232 ASKTPKSAGSHHCKPCNRSFGSEGALDS 259

>HD2C_MAIZE (Q9M4U4) Histone deacetylase 2c (HD2c) (Zm-HD2c)|
          Length = 300

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = -2

Query: 444 GKTPATSDKSPKSGGS-----VACKSCTKTFNSEVA 352
           GKT   +DKS KS  S     V CKSC+K+F SE A
Sbjct: 253 GKTIVNNDKSVKSPKSAPKSGVPCKSCSKSFISETA 288

>HD2B_ARATH (Q56WH4) Histone deacetylase 2b (HD-tuins protein 2)|
          Length = 306

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 453 KKVGKTPATSDKSPKSGG-SVACKSCTKTFNS 361
           KK GK+P  +++SPKSGG S    +  K FNS
Sbjct: 254 KKGGKSPVNANQSPKSGGQSSGGNNNKKPFNS 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,354,272
Number of Sequences: 219361
Number of extensions: 1060838
Number of successful extensions: 2703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2703
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)