ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet100h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane ... 37 0.025
2PIP1_ATRCA (P42767) Aquaporin PIP-type 36 0.033
3PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic... 35 0.056
4PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane ... 34 0.13
5PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane ... 33 0.37
6PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane ... 33 0.37
7PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 31 1.4
8SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4 31 1.4
9SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4 31 1.4
10SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4 30 1.8
11UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-reco... 30 3.1
12CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-... 29 5.3
13TELT_MOUSE (O70548) Telethonin (Titin cap protein) 28 6.9
14SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4 28 6.9

>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2.6) (OsPIP2.6)
          Length = 282

 Score = 36.6 bits (83), Expect = 0.025
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = -3

Query: 424 AAYHQYILRAAAIKALG 374
           AAYHQYILRAAAIKALG
Sbjct: 258 AAYHQYILRAAAIKALG 274



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>PIP1_ATRCA (P42767) Aquaporin PIP-type|
          Length = 282

 Score = 36.2 bits (82), Expect = 0.033
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = -3

Query: 424 AAYHQYILRAAAIKALG 374
           AAYHQY+LRAAAIKALG
Sbjct: 258 AAYHQYVLRAAAIKALG 274



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>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)|
           (Salt stress-induced major intrinsic protein)
          Length = 280

 Score = 35.4 bits (80), Expect = 0.056
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = -3

Query: 424 AAYHQYILRAAAIKALG 374
           AAYHQYILRA+AIKALG
Sbjct: 256 AAYHQYILRASAIKALG 272



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>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 3b) (PIP3b)
          Length = 278

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -3

Query: 424 AAYHQYILRAAAIKAL 377
           AAYHQYILRAAAIKAL
Sbjct: 254 AAYHQYILRAAAIKAL 269



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>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic|
           protein 2a) (PIP2a) (OsPIP2.1)
          Length = 290

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -3

Query: 424 AAYHQYILRAAAIKALG 374
           A YHQYILRA AIKALG
Sbjct: 268 AFYHQYILRAGAIKALG 284



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>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic|
           protein 2.4)
          Length = 291

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -3

Query: 424 AAYHQYILRAAAIKALG 374
           A YHQ+ILRAAAIKALG
Sbjct: 263 AFYHQFILRAAAIKALG 279



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -3

Query: 424 AAYHQYILRAAAIKALG 374
           A YHQ++LRA AIKALG
Sbjct: 262 AFYHQFVLRAGAIKALG 278



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>SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4|
          Length = 742

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCH C+K L   + C GCS
Sbjct: 294 YCHHCLKQLLASIPCCGCS 312



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>UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-recognin (EC|
            6.-.-.-) (Ubiquitin-protein ligase E3-alpha)
          Length = 1927

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 368  PEQPEQLSTPANNLMQRWQYCSSCPSGAS*PHKRTGFVLAVLLLHRAHP 222
            P +P+   TP + L+      S  P+ A  PH  T F   V L + A P
Sbjct: 1560 PPRPKLAQTPGSPLLSAPSTSSFTPAPAQIPHSGTNFAFLVQLFNPAGP 1608



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>CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 735

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 170 WWPLSLSLTCMHRH*TRPDGHD 235
           WWP  L+L+ +H+H  + + HD
Sbjct: 31  WWPNQLNLSILHQHDRKTNPHD 52



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>TELT_MOUSE (O70548) Telethonin (Titin cap protein)|
          Length = 167

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 205 QTLNEAGWARWRSSTANTKPVRLCG*LAPDGHEEQYCHR 321
           Q   EA WA W+  T +T+P   C     D    +  HR
Sbjct: 15  QERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHR 53



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>SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4|
          Length = 799

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCHRC+K     + C  CS
Sbjct: 295 YCHRCLKHTLATVPCGSCS 313


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,622,147
Number of Sequences: 219361
Number of extensions: 1012517
Number of successful extensions: 2501
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2500
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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