ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet100g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
2dbj|AK099598.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
3dbj|AK061993.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
4gb|AF073695.1|AF073695 Oryza sativa cysteine synthase (rcs1) mRN... 50 0.006
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.006
6emb|AL731889.5|CNS08C8T Oryza sativa chromosome 12, . BAC OJ1122... 50 0.006
7emb|BX000561.2|CNS08CE7 Oryza sativa chromosome 12, . BAC OJ1014... 50 0.006
8gb|AF078693.1|AF078693 Chlamydomonas reinhardtii putative O-acet... 48 0.023
9gb|BT016496.1| Zea mays clone Contig329 mRNA sequence 46 0.092
10emb|X85803.1|ZMCSOATL Z.mays mRNA for cysteine synthase 46 0.092
11gb|AY103651.1| Zea mays PCO145346 mRNA sequence 46 0.092
12gb|AC008577.7| Homo sapiens chromosome 5 clone CTC-558D17, compl... 42 1.4
13gb|AC161536.7| Mus musculus chromosome 5, clone RP23-340A18, com... 40 5.7
14emb|Z70287.1|CER09E10 Caenorhabditis elegans Cosmid R09E10, comp... 40 5.7
15dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.7
16gb|AC097110.1| Homo sapiens BAC clone RP11-51P8 from 4, complete... 40 5.7
17gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Ca... 40 5.7 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 388      tgatggactggaacagcaccgacgacaggtacc 420
                ||||||||||||| ||||||||||| |||||||
Sbjct: 26732471 tgatggactggaagagcaccgacgaaaggtacc 26732503
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>dbj|AK099598.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045K17, full
            insert sequence
          Length = 1281

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 388  tgatggactggaacagcaccgacgacaggtacc 420
            ||||||||||||| ||||||||||| |||||||
Sbjct: 1013 tgatggactggaagagcaccgacgaaaggtacc 981
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>dbj|AK061993.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C03, full
            insert sequence
          Length = 1280

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 388  tgatggactggaacagcaccgacgacaggtacc 420
            ||||||||||||| ||||||||||| |||||||
Sbjct: 1012 tgatggactggaagagcaccgacgaaaggtacc 980
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>gb|AF073695.1|AF073695 Oryza sativa cysteine synthase (rcs1) mRNA, complete cds
          Length = 1290

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 388  tgatggactggaacagcaccgacgacaggtacc 420
            ||||||||||||| ||||||||||| |||||||
Sbjct: 1007 tgatggactggaagagcaccgacgaaaggtacc 975
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 388      tgatggactggaacagcaccgacgacaggtacc 420
                ||||||||||||| ||||||||||| |||||||
Sbjct: 26660641 tgatggactggaagagcaccgacgaaaggtacc 26660673
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>emb|AL731889.5|CNS08C8T Oryza sativa chromosome 12, . BAC OJ1122_G07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 83015

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 388   tgatggactggaacagcaccgacgacaggtacc 420
             ||||||||||||| ||||||||||| |||||||
Sbjct: 38655 tgatggactggaagagcaccgacgaaaggtacc 38623
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>emb|BX000561.2|CNS08CE7 Oryza sativa chromosome 12, . BAC OJ1014_F06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 104849

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 388   tgatggactggaacagcaccgacgacaggtacc 420
             ||||||||||||| ||||||||||| |||||||
Sbjct: 66507 tgatggactggaagagcaccgacgaaaggtacc 66475
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>gb|AF078693.1|AF078693 Chlamydomonas reinhardtii putative O-acetylserine(thiol)lyase
            precursor (Crcys-1A) mRNA, nuclear gene encoding
            organellar protein, complete cds
          Length = 1492

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 395  ctggaacagcaccgacgacaggta 418
            ||||||||||||||||||||||||
Sbjct: 1083 ctggaacagcaccgacgacaggta 1060
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>gb|BT016496.1| Zea mays clone Contig329 mRNA sequence
          Length = 1500

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 388  tgatggactggaacagcaccgacgacaggta 418
            |||||||||||||||||||||| || |||||
Sbjct: 1160 tgatggactggaacagcaccgatgagaggta 1130
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>emb|X85803.1|ZMCSOATL Z.mays mRNA for cysteine synthase
          Length = 1319

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 388  tgatggactggaacagcaccgacgacaggta 418
            |||||||||||||||||||||| || |||||
Sbjct: 1015 tgatggactggaacagcaccgatgagaggta 985
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>gb|AY103651.1| Zea mays PCO145346 mRNA sequence
          Length = 1483

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 388  tgatggactggaacagcaccgacgacaggta 418
            |||||||||||||||||||||| || |||||
Sbjct: 1163 tgatggactggaacagcaccgatgagaggta 1133
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>gb|AC008577.7| Homo sapiens chromosome 5 clone CTC-558D17, complete sequence
          Length = 77686

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 17    aacatttcaaatttcaatgtatata 41
             |||||||||||||||||| ||||||
Sbjct: 62085 aacatttcaaatttcaatttatata 62061
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>gb|AC161536.7| Mus musculus chromosome 5, clone RP23-340A18, complete sequence
          Length = 218835

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   cttccctgatggactggaac 401
             ||||||||||||||||||||
Sbjct: 29002 cttccctgatggactggaac 28983
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>emb|Z70287.1|CER09E10 Caenorhabditis elegans Cosmid R09E10, complete sequence
          Length = 37655

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    atcaaacatttcaaatttca 32
             ||||||||||||||||||||
Sbjct: 21282 atcaaacatttcaaatttca 21301
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 335     gggcgcggaaatggcccttc 354
               ||||||||||||||||||||
Sbjct: 2587491 gggcgcggaaatggcccttc 2587472
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>gb|AC097110.1| Homo sapiens BAC clone RP11-51P8 from 4, complete sequence
          Length = 153480

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    catcaaacatttcaaatttc 31
             ||||||||||||||||||||
Sbjct: 93281 catcaaacatttcaaatttc 93300
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>gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163077

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    gagcgagcgagtgggtgagc 85
             ||||||||||||||||||||
Sbjct: 36352 gagcgagcgagtgggtgagc 36371


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,684,111
Number of Sequences: 3902068
Number of extensions: 2684111
Number of successful extensions: 46215
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46152
Number of HSP's gapped (non-prelim): 63
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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