| Clone Name | rbaet100f08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y09602.1|HVCPMII H.vulgare gene encoding serine carboxypeptidase II, CP-MII Length = 6225 Score = 513 bits (259), Expect = e-142 Identities = 259/259 (100%) Strand = Plus / Minus Query: 1 agttaagaagcatctattgctttattgatgatcactttcgtttttaacacatcgagatta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5336 agttaagaagcatctattgctttattgatgatcactttcgtttttaacacatcgagatta 5277 Query: 61 ctactatttgacttccatccctttgtttgttgttaagccaccgtcacatttgtggtacgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5276 ctactatttgacttccatccctttgtttgttgttaagccaccgtcacatttgtggtacgg 5217 Query: 121 cctggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacgg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5216 cctggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacgg 5157 Query: 181 tgcagaggaacctcatggcccgcacctctgacggacaccagcgtaaggcccttgtacacc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5156 tgcagaggaacctcatggcccgcacctctgacggacaccagcgtaaggcccttgtacacc 5097 Query: 241 tggctccagccgccgacct 259 ||||||||||||||||||| Sbjct: 5096 tggctccagccgccgacct 5078 Score = 456 bits (230), Expect = e-125 Identities = 230/230 (100%) Strand = Plus / Minus Query: 255 gacctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatg 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3620 gacctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatg 3561 Query: 315 gacctcggagcatcatgccagtgggtattaatggtgtcgctgcaggtcgcccacgtgtag 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3560 gacctcggagcatcatgccagtgggtattaatggtgtcgctgcaggtcgcccacgtgtag 3501 Query: 375 ttcatggcgccggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtac 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3500 ttcatggcgccggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtac 3441 Query: 435 gccgtcgagtacctctccgtgcacgggtcgtacgacccggtcagccatgg 484 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3440 gccgtcgagtacctctccgtgcacgggtcgtacgacccggtcagccatgg 3391
>emb|AJ890016.1| Triticum aestivum partial mRNA for serine carboxypeptidase II, (cbp2 gene), cultivar Wyuna, from endosperm tissue Length = 892 Score = 402 bits (203), Expect = e-109 Identities = 227/235 (96%) Strand = Plus / Minus Query: 258 ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 512 ctgaagacccaaatccttaggccagctgcaataagctccctgtaaatgggaagcatggac 453 Query: 318 ctcggagcatcatgccagtgggtattaatggtgtcgctgcaggtcgcccacgtgtagttc 377 ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct: 452 ctcggagcatcatgccagtgggtattaatggtgtcgctgcacgtcgaccacgtgtagttc 393 Query: 378 atggcgccggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtacgcc 437 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 392 atagcgccggtgacgttggcgtggagggctgtctgcacgtcccgccggttgtagtacgcc 333 Query: 438 gtcgagtacctctccgtgcacgggtcgtacgacccggtcagccatgggtagcgcc 492 |||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 332 gtcgagtaccgctccgtgcacgggtcgtacgatccggtcagccatgggtagcgcc 278 Score = 309 bits (156), Expect = 5e-81 Identities = 231/254 (90%), Gaps = 4/254 (1%) Strand = Plus / Minus Query: 6 agaagcatctattgctttattgatgatcactttcgtttttaacacatcgagattactact 65 ||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||| Sbjct: 866 agaagcatctattgctttattgatgatcactcttgtttttc-cacatcgaaattacta-- 810 Query: 66 atttgacttccatccctttgtttgttgttaagccaccgtcacatttgtggtacggcctgg 125 |||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||| Sbjct: 809 -tttgacttccatccctttgtttgttgctaagccaccgtcgcatttgtggcctggcctgg 751 Query: 126 catgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacggtgcag 185 ||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||| Sbjct: 750 catgggcttgccctgcaggaagtactgaaacagtacgagcgcttgccgcggtcggtgcag 691 Query: 186 aggaacctcatggcccgcacctctgacggacaccagcgtaaggcccttgtacacctggct 245 ||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 690 aggaacctcgtggcccgcgcctctgacggagaccagcgtaagacccttgtacacctggct 631 Query: 246 ccagccgccgacct 259 ||| ||||| |||| Sbjct: 630 ccaaccgccaacct 617
>gb|AY290720.1| Triticum aestivum carboxypeptidase D mRNA, partial sequence Length = 372 Score = 236 bits (119), Expect = 6e-59 Identities = 155/167 (92%) Strand = Plus / Minus Query: 93 ttaagccaccgtcacatttgtggtacggcctggcatgggcttgccctgcaggaattgctg 152 |||||||| |||| ||||| |||| |||||||||||||||||||||||||||| | ||| Sbjct: 372 ttaagccagcgtcgcatttttggtctggcctggcatgggcttgccctgcaggaagtactg 313 Query: 153 aaacagtatgagcgcttgccgcggacggtgcagaggaacctcatggcccgcacctctgac 212 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 312 aaacagtacgagcgcttgccgcgggcggtgcagaggaacctcatggcccgcacctctgac 253 Query: 213 ggacaccagcgtaaggcccttgtacacctggctccagccgccgacct 259 ||||||||| |||||||||||||||||||||||||| ||||| |||| Sbjct: 252 ggacaccagtgtaaggcccttgtacacctggctccaaccgccaacct 206 Score = 168 bits (85), Expect = 1e-38 Identities = 94/97 (96%) Strand = Plus / Minus Query: 258 ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 101 ctgaagacccaaatccttaggccagctgcaataagctccctgtaaatgggaagcatggac 42 Query: 318 ctcggagcatcatgccagtgggtattaatggtgtcgc 354 ||||||||||||||||||||||| ||||||||||||| Sbjct: 41 ctcggagcatcatgccagtgggtgttaatggtgtcgc 5
>dbj|AK107218.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-C12, full insert sequence Length = 1561 Score = 125 bits (63), Expect = 1e-25 Identities = 182/221 (82%), Gaps = 3/221 (1%) Strand = Plus / Minus Query: 257 cctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatgga 316 |||||||||||| || ||||||||||||||||| ||||| |||||| ||||||| ||| Sbjct: 1227 cctgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacgga 1168 Query: 317 cctcggagcatcatgccagtgggtattaatggtgtcgctgcaggtcgcccacgtgtagtt 376 ||| || | ||| ||||| | || | | |||| ||||| |||||||| |||||||| Sbjct: 1167 ccttggcgaatctctccagttgtcgttgaggatgtcactgcacgtcgcccatgtgtagtt 1108 Query: 377 catggcgccggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtacgc 436 ||| || ||||||||||||||||| ||| ||||||| ||| |||||||||||||| | Sbjct: 1107 tatg---ccagtgacgttggcgtggagcgccctctgcacttccggccggttgtagtactc 1051 Query: 437 cgtcgagtacctctccgtgcacgggtcgtacgacccggtca 477 ||| ||||| |||||||||||||| || |||||||| |||| Sbjct: 1050 cgttgagtatctctccgtgcacggatcatacgaccctgtca 1010
>dbj|AK107270.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-H11, full insert sequence Length = 1608 Score = 123 bits (62), Expect = 6e-25 Identities = 181/220 (82%), Gaps = 3/220 (1%) Strand = Plus / Minus Query: 258 ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317 ||||||||||| || ||||||||||||||||| ||||| |||||| ||||||| |||| Sbjct: 1229 ctgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacggac 1170 Query: 318 ctcggagcatcatgccagtgggtattaatggtgtcgctgcaggtcgcccacgtgtagttc 377 || || | ||| ||||| | || | | |||| ||||| |||||||| |||||||| Sbjct: 1169 cttggcgaatctctccagttgtcgttgaggatgtcactgcacgtcgcccatgtgtagttt 1110 Query: 378 atggcgccggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtacgcc 437 ||| || ||||||||||||||||| ||| ||||||| ||| |||||||||||||| || Sbjct: 1109 atg---ccagtgacgttggcgtggagcgccctctgcacttccggccggttgtagtactcc 1053 Query: 438 gtcgagtacctctccgtgcacgggtcgtacgacccggtca 477 || ||||| |||||||||||||| || |||||||| |||| Sbjct: 1052 gttgagtatctctccgtgcacggatcatacgaccctgtca 1013 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 124 ggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacggtg 182 ||||||||||||||||||| ||| |||| ||| ||||||||||| || ||||| ||||| Sbjct: 1469 ggcatgggcttgccctgcaagaagtgcttaaagagtatgagcgcctggcgcggccggtg 1411
>dbj|AK064671.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E03, full insert sequence Length = 1744 Score = 123 bits (62), Expect = 6e-25 Identities = 181/220 (82%), Gaps = 3/220 (1%) Strand = Plus / Minus Query: 258 ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317 ||||||||||| || ||||||||||||||||| ||||| |||||| ||||||| |||| Sbjct: 1228 ctgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacggac 1169 Query: 318 ctcggagcatcatgccagtgggtattaatggtgtcgctgcaggtcgcccacgtgtagttc 377 || || | ||| ||||| | || | | |||| ||||| |||||||| |||||||| Sbjct: 1168 cttggcgaatctctccagttgtcgttgaggatgtcactgcacgtcgcccatgtgtagttt 1109 Query: 378 atggcgccggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtacgcc 437 ||| || ||||||||||||||||| ||| ||||||| ||| |||||||||||||| || Sbjct: 1108 atg---ccagtgacgttggcgtggagcgccctctgcacttccggccggttgtagtactcc 1052 Query: 438 gtcgagtacctctccgtgcacgggtcgtacgacccggtca 477 || ||||| |||||||||||||| || |||||||| |||| Sbjct: 1051 gttgagtatctctccgtgcacggatcatacgaccctgtca 1012
>gb|AC136522.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H03, complete sequence Length = 185881 Score = 107 bits (54), Expect = 3e-20 Identities = 107/124 (86%), Gaps = 3/124 (2%) Strand = Plus / Plus Query: 354 ctgcaggtcgcccacgtgtagttcatggcgccggtgacgttggcgtggagggccgtctgc 413 ||||| |||||||| |||||||| ||| || ||||||||||||||||| ||| ||||| Sbjct: 72992 ctgcacgtcgcccatgtgtagtttatg---ccagtgacgttggcgtggagcgccctctgc 73048 Query: 414 acgtcccgccggttgtagtacgccgtcgagtacctctccgtgcacgggtcgtacgacccg 473 || ||| |||||||||||||| |||| ||||| |||||||||||||| || |||||||| Sbjct: 73049 acttccggccggttgtagtactccgttgagtatctctccgtgcacggatcatacgaccct 73108 Query: 474 gtca 477 |||| Sbjct: 73109 gtca 73112 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 255 gacctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatg 314 |||||||||||||| || ||||||||||||||||| ||||| |||||| ||||||| | Sbjct: 71705 gacctgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacg 71764 Query: 315 gacct 319 ||||| Sbjct: 71765 gacct 71769 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 124 ggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacggtg 182 ||||||||||||||||||| ||| |||| ||| ||||||||||| || ||||| ||||| Sbjct: 60277 ggcatgggcttgccctgcaagaagtgcttaaagagtatgagcgcctggcgcggccggtg 60335
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 107 bits (54), Expect = 3e-20 Identities = 107/124 (86%), Gaps = 3/124 (2%) Strand = Plus / Plus Query: 354 ctgcaggtcgcccacgtgtagttcatggcgccggtgacgttggcgtggagggccgtctgc 413 ||||| |||||||| |||||||| ||| || ||||||||||||||||| ||| ||||| Sbjct: 10688392 ctgcacgtcgcccatgtgtagtttatg---ccagtgacgttggcgtggagcgccctctgc 10688448 Query: 414 acgtcccgccggttgtagtacgccgtcgagtacctctccgtgcacgggtcgtacgacccg 473 || ||| |||||||||||||| |||| ||||| |||||||||||||| || |||||||| Sbjct: 10688449 acttccggccggttgtagtactccgttgagtatctctccgtgcacggatcatacgaccct 10688508 Query: 474 gtca 477 |||| Sbjct: 10688509 gtca 10688512 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 255 gacctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatg 314 |||||||||||||| || ||||||||||||||||| ||||| |||||| ||||||| | Sbjct: 10687105 gacctgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacg 10687164 Query: 315 gacct 319 ||||| Sbjct: 10687165 gacct 10687169 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 124 ggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacggtg 182 ||||||||||||||||||| ||| |||| ||| ||||||||||| || ||||| ||||| Sbjct: 10675677 ggcatgggcttgccctgcaagaagtgcttaaagagtatgagcgcctggcgcggccggtg 10675735
>emb|X78876.1|HVACXPII1 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-1 Length = 1252 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 258 ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317 ||||||||||| || |||| ||||||||||||||| || | ||| || |||||||||||| Sbjct: 705 ctgaagacccatattcttatgccagctgcaatcagttcgcggtaaataggaagcatggac 646 Query: 318 ctcgg 322 ||||| Sbjct: 645 ctcgg 641
>gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster Length = 162249 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 256 acctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatgg 315 ||||||||||||| | | | ||||||||| |||| |||||| |||||||||| ||||||| Sbjct: 108710 acctgaagacccagaccttgaggccagctccaatgagctccttgtagatgggtagcatgg 108769 Query: 316 a 316 | Sbjct: 108770 a 108770 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Plus Query: 124 ggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacggtgc 183 |||||||| | ||||| || |||||||| ||||| | || ||| ||| |||||||||| Sbjct: 108201 ggcatgggttggcccttcaagaattgcttaaacaagaagaacgcctgctccggacggtgc 108260 Query: 184 agaggaacctcatggcc 200 || |||||||||||||| Sbjct: 108261 aggggaacctcatggcc 108277 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 256 acctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatgg 315 ||||||||||||| | | | |||||| || |||| ||||| ||||||||||| ||||||| Sbjct: 80144 acctgaagacccacaccttgaggccaccttcaatgagctctctgtagatgggcagcatgg 80203 Query: 316 a 316 | Sbjct: 80204 a 80204 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 124 ggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacggtgc 183 |||||||| | ||||||||||||||||| ||||| | |||||| ||| || |||||| Sbjct: 92680 ggcatgggttcgccctgcaggaattgcttgaacaggaagagcgcctgctcagggcggtgc 92739 Query: 184 agaggaacctc 194 || |||||||| Sbjct: 92740 agtggaacctc 92750
>emb|X78877.1|HVACXPII3 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-3 Length = 1979 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 386 ggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtacgcc 437 ||||||||||||||| || ||| ||||||||||| |||||||| ||||||| Sbjct: 1230 ggtgacgttggcgtgcagcgccttctgcacgtccggccggttgaggtacgcc 1179
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 256 acctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatgg 315 ||||||| ||||| || ||||| ||||| ||||||||||| | ||| || |||||||||| Sbjct: 3055403 acctgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatgg 3055344 Query: 316 acct 319 |||| Sbjct: 3055343 acct 3055340
>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0011G08 Length = 139490 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 256 acctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatgg 315 ||||||| ||||| || ||||| ||||| ||||||||||| | ||| || |||||||||| Sbjct: 136920 acctgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatgg 136861 Query: 316 acct 319 |||| Sbjct: 136860 acct 136857
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 256 acctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatgg 315 ||||||| ||||| || ||||| ||||| ||||||||||| | ||| || |||||||||| Sbjct: 23443 acctgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatgg 23384 Query: 316 acct 319 |||| Sbjct: 23383 acct 23380
>gb|DQ207647.1| Zea mays cultivar inbred line Mo17 IDP98 marker Length = 468 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 169 tgccgcggacggtgcagaggaacctcatggcccgcacctctgacggacaccagcgtaagg 228 |||||||| |||||||| |||||||| || || || |||| ||| | |||||| || || Sbjct: 265 tgccgcggccggtgcaggggaacctcgtgccctgcgcctcggaccgtcaccagtgtcagc 206 Query: 229 cccttgtacacctggctccagccgccgacct 259 |||| ||||||||||| ||| || ||||||| Sbjct: 205 ccctcgtacacctggcaccacccaccgacct 175
>gb|DQ207646.1| Zea mays cultivar B73 IDP98 marker Length = 524 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 169 tgccgcggacggtgcagaggaacctcatggcccgcacctctgacggacaccagcgtaagg 228 |||||||| |||||||| |||||||| || || || |||| ||| | |||||| || || Sbjct: 251 tgccgcggccggtgcaggggaacctcgtgccctgcgcctcggaccgtcaccagtgtcagc 192 Query: 229 cccttgtacacctggctccagccgccgacct 259 |||| ||||||||||| ||| || ||||||| Sbjct: 191 ccctcgtacacctggcaccacccaccgacct 161
>ref|XM_550207.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1750 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 258 ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317 ||||| ||||| || ||||| ||||| ||||||||||| | ||| || |||||||||||| Sbjct: 1223 ctgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatggac 1164 Query: 318 ct 319 || Sbjct: 1163 ct 1162
>dbj|AK071183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086P08, full insert sequence Length = 1750 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 258 ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317 ||||| ||||| || ||||| ||||| ||||||||||| | ||| || |||||||||||| Sbjct: 1223 ctgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatggac 1164 Query: 318 ct 319 || Sbjct: 1163 ct 1162
>gb|AY106653.1| Zea mays PCO089814 mRNA sequence Length = 618 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 386 ggtgacgttggcgtggagggccgtctgcacgtcc 419 |||||||||||||||||| ||| ||||||||||| Sbjct: 359 ggtgacgttggcgtggagcgccctctgcacgtcc 326
>gb|AY110765.1| Zea mays CL64299_1 mRNA sequence Length = 1158 Score = 46.1 bits (23), Expect = 0.11 Identities = 74/91 (81%) Strand = Plus / Minus Query: 169 tgccgcggacggtgcagaggaacctcatggcccgcacctctgacggacaccagcgtaagg 228 |||||||| |||||||| |||||||| | || || |||| ||| | |||||| || || Sbjct: 777 tgccgcggccggtgcaggggaacctcgggccctgcgcctcggaccgtcaccagtgtcagc 718 Query: 229 cccttgtacacctggctccagccgccgacct 259 |||| ||||||||||| ||| || ||||||| Sbjct: 717 ccctcgtacacctggcaccacccaccgacct 687 Score = 42.1 bits (21), Expect = 1.7 Identities = 54/65 (83%) Strand = Plus / Minus Query: 258 ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317 ||||| ||||| ||||||| ||| || || || || || | |||||| |||||||||||| Sbjct: 582 ctgaaaacccatatccttatgcccgcggcgatgagttcacggtagataggaagcatggac 523 Query: 318 ctcgg 322 ||||| Sbjct: 522 ctcgg 518
>gb|AC113302.13| Mus musculus chromosome 5, clone RP23-431M7, complete sequence Length = 201427 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tacacctggctccagccgcc 254 |||||||||||||||||||| Sbjct: 81878 tacacctggctccagccgcc 81897
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 gggccgtctgcacgtcccgccggt 426 ||||||||||||||||| |||||| Sbjct: 2962665 gggccgtctgcacgtcctgccggt 2962642
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 acttccatccctttgtttgt 90 |||||||||||||||||||| Sbjct: 609828 acttccatccctttgtttgt 609847
>gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O8, complete sequence Length = 138368 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 acttccatccctttgtttgt 90 |||||||||||||||||||| Sbjct: 93330 acttccatccctttgtttgt 93311
>gb|AC182692.2| Populus trichocarpa clone Pop1-44B2, complete sequence Length = 105327 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 tttattgatgatcactttcgtttt 44 |||||||||||||||| ||||||| Sbjct: 16718 tttattgatgatcactctcgtttt 16695
>gb|AE006795.1| Sulfolobus solfataricus P2 section 154 of 272 of the complete genome Length = 11133 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gaattgctgaaacagtatga 163 |||||||||||||||||||| Sbjct: 92 gaattgctgaaacagtatga 73
>emb|X78878.1|HVACXPII2 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-2 Length = 1580 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 175 ggacggtgcagaggaacctcatggcccgcacc 206 ||||| || |||||||||||||| |||||||| Sbjct: 1231 ggacgatggagaggaacctcatgacccgcacc 1200
>ref|XM_317030.2| Anopheles gambiae str. PEST ENSANGP00000019240 (ENSANGG00000016751), partial mRNA Length = 1041 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 attgctgaaacagtatgagc 165 |||||||||||||||||||| Sbjct: 228 attgctgaaacagtatgagc 247
>dbj|AP006086.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT20G22, TM0150, complete sequence Length = 93469 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tgacttccatccctttgttt 88 |||||||||||||||||||| Sbjct: 6689 tgacttccatccctttgttt 6708
>dbj|AP004984.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT44N06, TM0438, complete sequence Length = 107764 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tgacttccatccctttgttt 88 |||||||||||||||||||| Sbjct: 43029 tgacttccatccctttgttt 43048 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,205,683 Number of Sequences: 3902068 Number of extensions: 3205683 Number of successful extensions: 60106 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59971 Number of HSP's gapped (non-prelim): 134 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)