ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet100f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Y09602.1|HVCPMII H.vulgare gene encoding serine carboxypepti... 513 e-142
2emb|AJ890016.1| Triticum aestivum partial mRNA for serine carbox... 402 e-109
3gb|AY290720.1| Triticum aestivum carboxypeptidase D mRNA, partia... 236 6e-59
4dbj|AK107218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
5dbj|AK107270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 6e-25
6dbj|AK064671.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 6e-25
7gb|AC136522.3| Oryza sativa (japonica cultivar-group) chromosome... 107 3e-20
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
9emb|X78876.1|HVACXPII1 Hordeum vulgare L. (Alexis) mRNA for seri... 66 1e-07
10gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster 58 3e-05
11emb|X78877.1|HVACXPII3 Hordeum vulgare L. (Alexis) mRNA for seri... 56 1e-04
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
13dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
14dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
15gb|DQ207647.1| Zea mays cultivar inbred line Mo17 IDP98 marker 54 4e-04
16gb|DQ207646.1| Zea mays cultivar B73 IDP98 marker 54 4e-04
17ref|XM_550207.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
18dbj|AK071183.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
19gb|AY106653.1| Zea mays PCO089814 mRNA sequence 52 0.002
20gb|AY110765.1| Zea mays CL64299_1 mRNA sequence 46 0.11
21gb|AC113302.13| Mus musculus chromosome 5, clone RP23-431M7, com... 40 6.7
22gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 6.7
23gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence 40 6.7
24gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O... 40 6.7
25gb|AC182692.2| Populus trichocarpa clone Pop1-44B2, complete seq... 40 6.7
26gb|AE006795.1| Sulfolobus solfataricus P2 section 154 of 272 of ... 40 6.7
27emb|X78878.1|HVACXPII2 Hordeum vulgare L. (Alexis) mRNA for seri... 40 6.7
28ref|XM_317030.2| Anopheles gambiae str. PEST ENSANGP00000019240 ... 40 6.7
29dbj|AP006086.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 6.7
30dbj|AP004984.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 6.7

>emb|Y09602.1|HVCPMII H.vulgare gene encoding serine carboxypeptidase II, CP-MII
          Length = 6225

 Score =  513 bits (259), Expect = e-142
 Identities = 259/259 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    agttaagaagcatctattgctttattgatgatcactttcgtttttaacacatcgagatta 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5336 agttaagaagcatctattgctttattgatgatcactttcgtttttaacacatcgagatta 5277

                                                                        
Query: 61   ctactatttgacttccatccctttgtttgttgttaagccaccgtcacatttgtggtacgg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5276 ctactatttgacttccatccctttgtttgttgttaagccaccgtcacatttgtggtacgg 5217

                                                                        
Query: 121  cctggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacgg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5216 cctggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacgg 5157

                                                                        
Query: 181  tgcagaggaacctcatggcccgcacctctgacggacaccagcgtaaggcccttgtacacc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5156 tgcagaggaacctcatggcccgcacctctgacggacaccagcgtaaggcccttgtacacc 5097

                               
Query: 241  tggctccagccgccgacct 259
            |||||||||||||||||||
Sbjct: 5096 tggctccagccgccgacct 5078



 Score =  456 bits (230), Expect = e-125
 Identities = 230/230 (100%)
 Strand = Plus / Minus

                                                                        
Query: 255  gacctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatg 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3620 gacctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatg 3561

                                                                        
Query: 315  gacctcggagcatcatgccagtgggtattaatggtgtcgctgcaggtcgcccacgtgtag 374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3560 gacctcggagcatcatgccagtgggtattaatggtgtcgctgcaggtcgcccacgtgtag 3501

                                                                        
Query: 375  ttcatggcgccggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtac 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3500 ttcatggcgccggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtac 3441

                                                              
Query: 435  gccgtcgagtacctctccgtgcacgggtcgtacgacccggtcagccatgg 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3440 gccgtcgagtacctctccgtgcacgggtcgtacgacccggtcagccatgg 3391



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>emb|AJ890016.1| Triticum aestivum partial mRNA for serine carboxypeptidase II,
           (cbp2 gene), cultivar Wyuna, from endosperm tissue
          Length = 892

 Score =  402 bits (203), Expect = e-109
 Identities = 227/235 (96%)
 Strand = Plus / Minus

                                                                       
Query: 258 ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 512 ctgaagacccaaatccttaggccagctgcaataagctccctgtaaatgggaagcatggac 453

                                                                       
Query: 318 ctcggagcatcatgccagtgggtattaatggtgtcgctgcaggtcgcccacgtgtagttc 377
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 452 ctcggagcatcatgccagtgggtattaatggtgtcgctgcacgtcgaccacgtgtagttc 393

                                                                       
Query: 378 atggcgccggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtacgcc 437
           || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 392 atagcgccggtgacgttggcgtggagggctgtctgcacgtcccgccggttgtagtacgcc 333

                                                                  
Query: 438 gtcgagtacctctccgtgcacgggtcgtacgacccggtcagccatgggtagcgcc 492
           |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 332 gtcgagtaccgctccgtgcacgggtcgtacgatccggtcagccatgggtagcgcc 278



 Score =  309 bits (156), Expect = 5e-81
 Identities = 231/254 (90%), Gaps = 4/254 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   agaagcatctattgctttattgatgatcactttcgtttttaacacatcgagattactact 65
           ||||||||||||||||||||||||||||||| | ||||||  |||||||| |||||||  
Sbjct: 866 agaagcatctattgctttattgatgatcactcttgtttttc-cacatcgaaattacta-- 810

                                                                       
Query: 66  atttgacttccatccctttgtttgttgttaagccaccgtcacatttgtggtacggcctgg 125
            |||||||||||||||||||||||||| |||||||||||| |||||||||   |||||||
Sbjct: 809 -tttgacttccatccctttgtttgttgctaagccaccgtcgcatttgtggcctggcctgg 751

                                                                       
Query: 126 catgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacggtgcag 185
           ||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||
Sbjct: 750 catgggcttgccctgcaggaagtactgaaacagtacgagcgcttgccgcggtcggtgcag 691

                                                                       
Query: 186 aggaacctcatggcccgcacctctgacggacaccagcgtaaggcccttgtacacctggct 245
           ||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 690 aggaacctcgtggcccgcgcctctgacggagaccagcgtaagacccttgtacacctggct 631

                         
Query: 246 ccagccgccgacct 259
           ||| ||||| ||||
Sbjct: 630 ccaaccgccaacct 617



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>gb|AY290720.1| Triticum aestivum carboxypeptidase D mRNA, partial sequence
          Length = 372

 Score =  236 bits (119), Expect = 6e-59
 Identities = 155/167 (92%)
 Strand = Plus / Minus

                                                                       
Query: 93  ttaagccaccgtcacatttgtggtacggcctggcatgggcttgccctgcaggaattgctg 152
           |||||||| |||| ||||| ||||  |||||||||||||||||||||||||||| | |||
Sbjct: 372 ttaagccagcgtcgcatttttggtctggcctggcatgggcttgccctgcaggaagtactg 313

                                                                       
Query: 153 aaacagtatgagcgcttgccgcggacggtgcagaggaacctcatggcccgcacctctgac 212
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 312 aaacagtacgagcgcttgccgcgggcggtgcagaggaacctcatggcccgcacctctgac 253

                                                          
Query: 213 ggacaccagcgtaaggcccttgtacacctggctccagccgccgacct 259
           ||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct: 252 ggacaccagtgtaaggcccttgtacacctggctccaaccgccaacct 206



 Score =  168 bits (85), Expect = 1e-38
 Identities = 94/97 (96%)
 Strand = Plus / Minus

                                                                       
Query: 258 ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 101 ctgaagacccaaatccttaggccagctgcaataagctccctgtaaatgggaagcatggac 42

                                                
Query: 318 ctcggagcatcatgccagtgggtattaatggtgtcgc 354
           ||||||||||||||||||||||| |||||||||||||
Sbjct: 41  ctcggagcatcatgccagtgggtgttaatggtgtcgc 5



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>dbj|AK107218.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-C12, full
            insert sequence
          Length = 1561

 Score =  125 bits (63), Expect = 1e-25
 Identities = 182/221 (82%), Gaps = 3/221 (1%)
 Strand = Plus / Minus

                                                                        
Query: 257  cctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatgga 316
            |||||||||||| || ||||||||||||||||| |||||   |||||| ||||||| |||
Sbjct: 1227 cctgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacgga 1168

                                                                        
Query: 317  cctcggagcatcatgccagtgggtattaatggtgtcgctgcaggtcgcccacgtgtagtt 376
            ||| || | |||   ||||| |   || | | |||| ||||| |||||||| ||||||||
Sbjct: 1167 ccttggcgaatctctccagttgtcgttgaggatgtcactgcacgtcgcccatgtgtagtt 1108

                                                                        
Query: 377  catggcgccggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtacgc 436
             |||   || ||||||||||||||||| ||| ||||||| ||| |||||||||||||| |
Sbjct: 1107 tatg---ccagtgacgttggcgtggagcgccctctgcacttccggccggttgtagtactc 1051

                                                     
Query: 437  cgtcgagtacctctccgtgcacgggtcgtacgacccggtca 477
            ||| ||||| |||||||||||||| || |||||||| ||||
Sbjct: 1050 cgttgagtatctctccgtgcacggatcatacgaccctgtca 1010



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>dbj|AK107270.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-H11, full
            insert sequence
          Length = 1608

 Score =  123 bits (62), Expect = 6e-25
 Identities = 181/220 (82%), Gaps = 3/220 (1%)
 Strand = Plus / Minus

                                                                        
Query: 258  ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317
            ||||||||||| || ||||||||||||||||| |||||   |||||| ||||||| ||||
Sbjct: 1229 ctgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacggac 1170

                                                                        
Query: 318  ctcggagcatcatgccagtgggtattaatggtgtcgctgcaggtcgcccacgtgtagttc 377
            || || | |||   ||||| |   || | | |||| ||||| |||||||| |||||||| 
Sbjct: 1169 cttggcgaatctctccagttgtcgttgaggatgtcactgcacgtcgcccatgtgtagttt 1110

                                                                        
Query: 378  atggcgccggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtacgcc 437
            |||   || ||||||||||||||||| ||| ||||||| ||| |||||||||||||| ||
Sbjct: 1109 atg---ccagtgacgttggcgtggagcgccctctgcacttccggccggttgtagtactcc 1053

                                                    
Query: 438  gtcgagtacctctccgtgcacgggtcgtacgacccggtca 477
            || ||||| |||||||||||||| || |||||||| ||||
Sbjct: 1052 gttgagtatctctccgtgcacggatcatacgaccctgtca 1013



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 124  ggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacggtg 182
            ||||||||||||||||||| ||| |||| ||| ||||||||||| || ||||| |||||
Sbjct: 1469 ggcatgggcttgccctgcaagaagtgcttaaagagtatgagcgcctggcgcggccggtg 1411



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>dbj|AK064671.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E03, full
            insert sequence
          Length = 1744

 Score =  123 bits (62), Expect = 6e-25
 Identities = 181/220 (82%), Gaps = 3/220 (1%)
 Strand = Plus / Minus

                                                                        
Query: 258  ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317
            ||||||||||| || ||||||||||||||||| |||||   |||||| ||||||| ||||
Sbjct: 1228 ctgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacggac 1169

                                                                        
Query: 318  ctcggagcatcatgccagtgggtattaatggtgtcgctgcaggtcgcccacgtgtagttc 377
            || || | |||   ||||| |   || | | |||| ||||| |||||||| |||||||| 
Sbjct: 1168 cttggcgaatctctccagttgtcgttgaggatgtcactgcacgtcgcccatgtgtagttt 1109

                                                                        
Query: 378  atggcgccggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtacgcc 437
            |||   || ||||||||||||||||| ||| ||||||| ||| |||||||||||||| ||
Sbjct: 1108 atg---ccagtgacgttggcgtggagcgccctctgcacttccggccggttgtagtactcc 1052

                                                    
Query: 438  gtcgagtacctctccgtgcacgggtcgtacgacccggtca 477
            || ||||| |||||||||||||| || |||||||| ||||
Sbjct: 1051 gttgagtatctctccgtgcacggatcatacgaccctgtca 1012



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>gb|AC136522.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0037H03, complete sequence
          Length = 185881

 Score =  107 bits (54), Expect = 3e-20
 Identities = 107/124 (86%), Gaps = 3/124 (2%)
 Strand = Plus / Plus

                                                                         
Query: 354   ctgcaggtcgcccacgtgtagttcatggcgccggtgacgttggcgtggagggccgtctgc 413
             ||||| |||||||| |||||||| |||   || ||||||||||||||||| ||| |||||
Sbjct: 72992 ctgcacgtcgcccatgtgtagtttatg---ccagtgacgttggcgtggagcgccctctgc 73048

                                                                         
Query: 414   acgtcccgccggttgtagtacgccgtcgagtacctctccgtgcacgggtcgtacgacccg 473
             || ||| |||||||||||||| |||| ||||| |||||||||||||| || |||||||| 
Sbjct: 73049 acttccggccggttgtagtactccgttgagtatctctccgtgcacggatcatacgaccct 73108

                 
Query: 474   gtca 477
             ||||
Sbjct: 73109 gtca 73112



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                         
Query: 255   gacctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatg 314
             |||||||||||||| || ||||||||||||||||| |||||   |||||| ||||||| |
Sbjct: 71705 gacctgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacg 71764

                  
Query: 315   gacct 319
             |||||
Sbjct: 71765 gacct 71769



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 124   ggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacggtg 182
             ||||||||||||||||||| ||| |||| ||| ||||||||||| || ||||| |||||
Sbjct: 60277 ggcatgggcttgccctgcaagaagtgcttaaagagtatgagcgcctggcgcggccggtg 60335



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  107 bits (54), Expect = 3e-20
 Identities = 107/124 (86%), Gaps = 3/124 (2%)
 Strand = Plus / Plus

                                                                            
Query: 354      ctgcaggtcgcccacgtgtagttcatggcgccggtgacgttggcgtggagggccgtctgc 413
                ||||| |||||||| |||||||| |||   || ||||||||||||||||| ||| |||||
Sbjct: 10688392 ctgcacgtcgcccatgtgtagtttatg---ccagtgacgttggcgtggagcgccctctgc 10688448

                                                                            
Query: 414      acgtcccgccggttgtagtacgccgtcgagtacctctccgtgcacgggtcgtacgacccg 473
                || ||| |||||||||||||| |||| ||||| |||||||||||||| || |||||||| 
Sbjct: 10688449 acttccggccggttgtagtactccgttgagtatctctccgtgcacggatcatacgaccct 10688508

                    
Query: 474      gtca 477
                ||||
Sbjct: 10688509 gtca 10688512



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 255      gacctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatg 314
                |||||||||||||| || ||||||||||||||||| |||||   |||||| ||||||| |
Sbjct: 10687105 gacctgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacg 10687164

                     
Query: 315      gacct 319
                |||||
Sbjct: 10687165 gacct 10687169



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 124      ggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacggtg 182
                ||||||||||||||||||| ||| |||| ||| ||||||||||| || ||||| |||||
Sbjct: 10675677 ggcatgggcttgccctgcaagaagtgcttaaagagtatgagcgcctggcgcggccggtg 10675735



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>emb|X78876.1|HVACXPII1 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-1
          Length = 1252

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 258 ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317
           ||||||||||| || |||| ||||||||||||||| || | ||| || ||||||||||||
Sbjct: 705 ctgaagacccatattcttatgccagctgcaatcagttcgcggtaaataggaagcatggac 646

                
Query: 318 ctcgg 322
           |||||
Sbjct: 645 ctcgg 641



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>gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster
          Length = 162249

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                          
Query: 256    acctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatgg 315
              ||||||||||||| | | | ||||||||| |||| |||||| |||||||||| |||||||
Sbjct: 108710 acctgaagacccagaccttgaggccagctccaatgagctccttgtagatgggtagcatgg 108769

               
Query: 316    a 316
              |
Sbjct: 108770 a 108770



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                          
Query: 124    ggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacggtgc 183
              |||||||| | ||||| || |||||||| |||||  | || ||| |||  ||||||||||
Sbjct: 108201 ggcatgggttggcccttcaagaattgcttaaacaagaagaacgcctgctccggacggtgc 108260

                               
Query: 184    agaggaacctcatggcc 200
              || ||||||||||||||
Sbjct: 108261 aggggaacctcatggcc 108277



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                         
Query: 256   acctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatgg 315
             ||||||||||||| | | | |||||| || |||| ||||| ||||||||||| |||||||
Sbjct: 80144 acctgaagacccacaccttgaggccaccttcaatgagctctctgtagatgggcagcatgg 80203

              
Query: 316   a 316
             |
Sbjct: 80204 a 80204



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                         
Query: 124   ggcatgggcttgccctgcaggaattgctgaaacagtatgagcgcttgccgcggacggtgc 183
             |||||||| | |||||||||||||||||  ||||| | |||||| |||   || ||||||
Sbjct: 92680 ggcatgggttcgccctgcaggaattgcttgaacaggaagagcgcctgctcagggcggtgc 92739

                        
Query: 184   agaggaacctc 194
             || ||||||||
Sbjct: 92740 agtggaacctc 92750



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>emb|X78877.1|HVACXPII3 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-3
          Length = 1979

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 386  ggtgacgttggcgtggagggccgtctgcacgtcccgccggttgtagtacgcc 437
            ||||||||||||||| || ||| ||||||||||| ||||||||  |||||||
Sbjct: 1230 ggtgacgttggcgtgcagcgccttctgcacgtccggccggttgaggtacgcc 1179



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                           
Query: 256     acctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatgg 315
               ||||||| ||||| || ||||| ||||| ||||||||||| | ||| || ||||||||||
Sbjct: 3055403 acctgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatgg 3055344

                   
Query: 316     acct 319
               ||||
Sbjct: 3055343 acct 3055340



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>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0011G08
          Length = 139490

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                          
Query: 256    acctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatgg 315
              ||||||| ||||| || ||||| ||||| ||||||||||| | ||| || ||||||||||
Sbjct: 136920 acctgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatgg 136861

                  
Query: 316    acct 319
              ||||
Sbjct: 136860 acct 136857



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>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0433F09
          Length = 150150

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                         
Query: 256   acctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatgg 315
             ||||||| ||||| || ||||| ||||| ||||||||||| | ||| || ||||||||||
Sbjct: 23443 acctgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatgg 23384

                 
Query: 316   acct 319
             ||||
Sbjct: 23383 acct 23380



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>gb|DQ207647.1| Zea mays cultivar inbred line Mo17 IDP98 marker
          Length = 468

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                       
Query: 169 tgccgcggacggtgcagaggaacctcatggcccgcacctctgacggacaccagcgtaagg 228
           |||||||| |||||||| |||||||| || || || |||| ||| | |||||| || || 
Sbjct: 265 tgccgcggccggtgcaggggaacctcgtgccctgcgcctcggaccgtcaccagtgtcagc 206

                                          
Query: 229 cccttgtacacctggctccagccgccgacct 259
           |||| ||||||||||| ||| || |||||||
Sbjct: 205 ccctcgtacacctggcaccacccaccgacct 175



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>gb|DQ207646.1| Zea mays cultivar B73 IDP98 marker
          Length = 524

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                       
Query: 169 tgccgcggacggtgcagaggaacctcatggcccgcacctctgacggacaccagcgtaagg 228
           |||||||| |||||||| |||||||| || || || |||| ||| | |||||| || || 
Sbjct: 251 tgccgcggccggtgcaggggaacctcgtgccctgcgcctcggaccgtcaccagtgtcagc 192

                                          
Query: 229 cccttgtacacctggctccagccgccgacct 259
           |||| ||||||||||| ||| || |||||||
Sbjct: 191 ccctcgtacacctggcaccacccaccgacct 161



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>ref|XM_550207.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1750

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 258  ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317
            ||||| ||||| || ||||| ||||| ||||||||||| | ||| || ||||||||||||
Sbjct: 1223 ctgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatggac 1164

              
Query: 318  ct 319
            ||
Sbjct: 1163 ct 1162



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>dbj|AK071183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086P08, full
            insert sequence
          Length = 1750

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 258  ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317
            ||||| ||||| || ||||| ||||| ||||||||||| | ||| || ||||||||||||
Sbjct: 1223 ctgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatggac 1164

              
Query: 318  ct 319
            ||
Sbjct: 1163 ct 1162



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>gb|AY106653.1| Zea mays PCO089814 mRNA sequence
          Length = 618

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 386 ggtgacgttggcgtggagggccgtctgcacgtcc 419
           |||||||||||||||||| ||| |||||||||||
Sbjct: 359 ggtgacgttggcgtggagcgccctctgcacgtcc 326



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>gb|AY110765.1| Zea mays CL64299_1 mRNA sequence
          Length = 1158

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 74/91 (81%)
 Strand = Plus / Minus

                                                                       
Query: 169 tgccgcggacggtgcagaggaacctcatggcccgcacctctgacggacaccagcgtaagg 228
           |||||||| |||||||| ||||||||  | || || |||| ||| | |||||| || || 
Sbjct: 777 tgccgcggccggtgcaggggaacctcgggccctgcgcctcggaccgtcaccagtgtcagc 718

                                          
Query: 229 cccttgtacacctggctccagccgccgacct 259
           |||| ||||||||||| ||| || |||||||
Sbjct: 717 ccctcgtacacctggcaccacccaccgacct 687



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 258 ctgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggac 317
           ||||| ||||| ||||||| ||| || || || || || | |||||| ||||||||||||
Sbjct: 582 ctgaaaacccatatccttatgcccgcggcgatgagttcacggtagataggaagcatggac 523

                
Query: 318 ctcgg 322
           |||||
Sbjct: 522 ctcgg 518



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>gb|AC113302.13| Mus musculus chromosome 5, clone RP23-431M7, complete sequence
          Length = 201427

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   tacacctggctccagccgcc 254
             ||||||||||||||||||||
Sbjct: 81878 tacacctggctccagccgcc 81897



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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 403     gggccgtctgcacgtcccgccggt 426
               ||||||||||||||||| ||||||
Sbjct: 2962665 gggccgtctgcacgtcctgccggt 2962642



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>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     acttccatccctttgtttgt 90
              ||||||||||||||||||||
Sbjct: 609828 acttccatccctttgtttgt 609847



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>gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O8, complete sequence
          Length = 138368

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    acttccatccctttgtttgt 90
             ||||||||||||||||||||
Sbjct: 93330 acttccatccctttgtttgt 93311



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>gb|AC182692.2| Populus trichocarpa clone Pop1-44B2, complete sequence
          Length = 105327

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    tttattgatgatcactttcgtttt 44
             |||||||||||||||| |||||||
Sbjct: 16718 tttattgatgatcactctcgtttt 16695



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>gb|AE006795.1| Sulfolobus solfataricus P2 section 154 of 272 of the complete
           genome
          Length = 11133

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 gaattgctgaaacagtatga 163
           ||||||||||||||||||||
Sbjct: 92  gaattgctgaaacagtatga 73



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>emb|X78878.1|HVACXPII2 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-2
          Length = 1580

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 175  ggacggtgcagaggaacctcatggcccgcacc 206
            ||||| || |||||||||||||| ||||||||
Sbjct: 1231 ggacgatggagaggaacctcatgacccgcacc 1200



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>ref|XM_317030.2| Anopheles gambiae str. PEST ENSANGP00000019240
           (ENSANGG00000016751), partial mRNA
          Length = 1041

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 attgctgaaacagtatgagc 165
           ||||||||||||||||||||
Sbjct: 228 attgctgaaacagtatgagc 247



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>dbj|AP006086.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT20G22, TM0150,
            complete sequence
          Length = 93469

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 69   tgacttccatccctttgttt 88
            ||||||||||||||||||||
Sbjct: 6689 tgacttccatccctttgttt 6708



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>dbj|AP004984.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT44N06, TM0438,
             complete sequence
          Length = 107764

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    tgacttccatccctttgttt 88
             ||||||||||||||||||||
Sbjct: 43029 tgacttccatccctttgttt 43048


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,205,683
Number of Sequences: 3902068
Number of extensions: 3205683
Number of successful extensions: 60106
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59971
Number of HSP's gapped (non-prelim): 134
length of query: 492
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 470
effective length of database: 17,147,199,772
effective search space: 8059183892840
effective search space used: 8059183892840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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