ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet100f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK121520.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 4e-81
2dbj|AK105400.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 4e-81
3ref|XM_472862.1| Oryza sativa (japonica cultivar-group), predic... 307 2e-80
4gb|AY110273.1| Zea mays CL5678_1 mRNA sequence 299 4e-78
5emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4,... 248 1e-62
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 248 1e-62
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
8dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
9emb|AL161626.20| Human DNA sequence from clone RP11-214N16 on ch... 44 0.40
10gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genom... 42 1.6
11gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 42 1.6
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
13emb|AL355493.14| Human DNA sequence from clone RP11-748L13 on ch... 42 1.6
14gb|AC145753.1| Genomic sequence for Medicago truncatula, clone M... 42 1.6
15emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.6
16emb|CR925780.8| Zebrafish DNA sequence from clone CH211-112B19 i... 42 1.6
17emb|BX072578.10| Zebrafish DNA sequence from clone CH211-286A10 ... 42 1.6
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19gb|AC005875.2|AC005875 citb_188_b_12, complete sequence 42 1.6
20emb|BX927074.16| Zebrafish DNA sequence from clone DKEY-7L12 in ... 42 1.6
21gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 6.2
22gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosom... 40 6.2
23gb|AC164553.2| Mus musculus BAC clone RP23-361L12 from chromosom... 40 6.2
24ref|XM_858374.1| PREDICTED: Canis familiaris similar to UDP-gluc... 40 6.2
25ref|XM_858347.1| PREDICTED: Canis familiaris similar to UDP-gluc... 40 6.2
26ref|XM_536254.2| PREDICTED: Canis familiaris similar to UDP-gluc... 40 6.2
27ref|XM_858307.1| PREDICTED: Canis familiaris similar to UDP-gluc... 40 6.2
28gb|AC006337.5| Homo sapiens BAC clone RP11-535N23 from 7, comple... 40 6.2
29emb|AL157882.5| Human DNA sequence from clone RP11-202I11 on chr... 40 6.2
30gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, comple... 40 6.2
31gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.2
32gb|AC109811.4| Homo sapiens BAC clone RP13-539F13 from 4, comple... 40 6.2
33gb|AE004605.1| Pseudomonas aeruginosa PAO1, section 166 of 529 o... 40 6.2
34dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynt... 40 6.2
35gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome... 40 6.2
36dbj|AB024746.1| Burkholderia sp. NK8 cat (catC, catB, catA) and ... 40 6.2

>dbj|AK121520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028J23, full
            insert sequence
          Length = 1624

 Score =  309 bits (156), Expect = 4e-81
 Identities = 261/296 (88%)
 Strand = Plus / Minus

                                                                        
Query: 164  gtcacgccgccattcgagcgagcgcctcgccggcacgctcgcctgtggacagccggagct 223
            |||| |||||||  || ||||||||||||||||| |||||||| ||||||||||||||| 
Sbjct: 1326 gtcaggccgccagacgcgcgagcgcctcgccggcgcgctcgccggtggacagccggagcc 1267

                                                                        
Query: 224  tcctgtagtcatcgtagttgaacggcttgaaccggcgcgggtgctgctcgtcgacgaacg 283
            ||| |||||| ||||| ||||||  | || |||||||||||||||   |||| || | | 
Sbjct: 1266 tccggtagtcgtcgtacttgaactccctgtaccggcgcgggtgctcgccgtccaccagct 1207

                                                                        
Query: 284  cctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaacatggcgatcgagatgc 343
            || ||||||||| |||| |||||||||||||||| |||||||||||||||||||| | ||
Sbjct: 1206 cccccggcgcgctcaccgtgtcgtccttgggcgccagcaggaacatggcgatcgacacgc 1147

                                                                        
Query: 344  gcggcacggccgccacgcactgcacccggtgcttcacggtgtgcagcctcccgttgctcc 403
            ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 1146 gcggcaccgccgccacgcactgcaccctgtgcttcacgttgtgcagcctcccgttgctcc 1087

                                                                    
Query: 404  acgccgtgccgacgtcgccgacgttgacaaggaacgagccggggacggggtcgacg 459
            |||||  ||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct: 1086 acgcctggccgacgtcgccgacgttgacgacgaacgagccggggagggggtcgacg 1031



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>dbj|AK105400.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C10, full
            insert sequence
          Length = 1608

 Score =  309 bits (156), Expect = 4e-81
 Identities = 261/296 (88%)
 Strand = Plus / Minus

                                                                        
Query: 164  gtcacgccgccattcgagcgagcgcctcgccggcacgctcgcctgtggacagccggagct 223
            |||| |||||||  || ||||||||||||||||| |||||||| ||||||||||||||| 
Sbjct: 1324 gtcaggccgccagacgcgcgagcgcctcgccggcgcgctcgccggtggacagccggagcc 1265

                                                                        
Query: 224  tcctgtagtcatcgtagttgaacggcttgaaccggcgcgggtgctgctcgtcgacgaacg 283
            ||| |||||| ||||| ||||||  | || |||||||||||||||   |||| || | | 
Sbjct: 1264 tccggtagtcgtcgtacttgaactccctgtaccggcgcgggtgctcgccgtccaccagct 1205

                                                                        
Query: 284  cctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaacatggcgatcgagatgc 343
            || ||||||||| |||| |||||||||||||||| |||||||||||||||||||| | ||
Sbjct: 1204 cccccggcgcgctcaccgtgtcgtccttgggcgccagcaggaacatggcgatcgacacgc 1145

                                                                        
Query: 344  gcggcacggccgccacgcactgcacccggtgcttcacggtgtgcagcctcccgttgctcc 403
            ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 1144 gcggcaccgccgccacgcactgcaccctgtgcttcacgttgtgcagcctcccgttgctcc 1085

                                                                    
Query: 404  acgccgtgccgacgtcgccgacgttgacaaggaacgagccggggacggggtcgacg 459
            |||||  ||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct: 1084 acgcctggccgacgtcgccgacgttgacgacgaacgagccggggagggggtcgacg 1029



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>ref|XM_472862.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 903

 Score =  307 bits (155), Expect = 2e-80
 Identities = 248/279 (88%)
 Strand = Plus / Minus

                                                                       
Query: 181 gcgagcgcctcgccggcacgctcgcctgtggacagccggagcttcctgtagtcatcgtag 240
           ||||||||||||||||| |||||||| ||||||||||||||| ||| |||||| ||||| 
Sbjct: 887 gcgagcgcctcgccggcgcgctcgccggtggacagccggagcctccggtagtcgtcgtac 828

                                                                       
Query: 241 ttgaacggcttgaaccggcgcgggtgctgctcgtcgacgaacgcctccggcgcgcacacc 300
           ||||||  | || |||||||||||||||   |||| || | | || ||||||||| ||||
Sbjct: 827 ttgaactccctgtaccggcgcgggtgctcgccgtccaccagctcccccggcgcgctcacc 768

                                                                       
Query: 301 ctgtcgtccttgggcgcgagcaggaacatggcgatcgagatgcgcggcacggccgccacg 360
            |||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||||
Sbjct: 767 gtgtcgtccttgggcgccagcaggaacatggcgatcgacacgcgcggcaccgccgccacg 708

                                                                       
Query: 361 cactgcacccggtgcttcacggtgtgcagcctcccgttgctccacgccgtgccgacgtcg 420
           |||||||||| |||||||||| ||||||||||||||||||||||||||  ||||||||||
Sbjct: 707 cactgcaccctgtgcttcacgttgtgcagcctcccgttgctccacgcctggccgacgtcg 648

                                                  
Query: 421 ccgacgttgacaaggaacgagccggggacggggtcgacg 459
           ||||||||||| | |||||||||||||| ||||||||||
Sbjct: 647 ccgacgttgacgacgaacgagccggggagggggtcgacg 609



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>gb|AY110273.1| Zea mays CL5678_1 mRNA sequence
          Length = 763

 Score =  299 bits (151), Expect = 4e-78
 Identities = 223/247 (90%)
 Strand = Plus / Plus

                                                                       
Query: 209 tggacagccggagcttcctgtagtcatcgtagttgaacggcttgaaccggcgcgggtgct 268
           |||||||||||||| ||| |||||| |||||||||||||||||| |||| ||||||||  
Sbjct: 207 tggacagccggagcctccggtagtcgtcgtagttgaacggcttgtaccgacgcgggtggc 266

                                                                       
Query: 269 gctcgtcgacgaacgcctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaaca 328
            | ||||||| ||||||||||| |||| ||| | ||||||||||||||||||||||||||
Sbjct: 267 ccgcgtcgaccaacgcctccggggcgctcacgcggtcgtccttgggcgcgagcaggaaca 326

                                                                       
Query: 329 tggcgatcgagatgcgcggcacggccgccacgcactgcacccggtgcttcacggtgtgca 388
           ||||||| |||||||||||||||| ||| |||||| ||||||||||||||||| |||| |
Sbjct: 327 tggcgatggagatgcgcggcacgggcgcgacgcaccgcacccggtgcttcacgttgtgga 386

                                                                       
Query: 389 gcctcccgttgctccacgccgtgccgacgtcgccgacgttgacaaggaacgagccgggga 448
           |||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||
Sbjct: 387 gcctcccgttgctccacgccgtgccgacgtcgccgatgttgacgaggaaggagccggcga 446

                  
Query: 449 cggggtc 455
           |||||||
Sbjct: 447 cggggtc 453



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>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21,
             complete sequence
          Length = 160155

 Score =  248 bits (125), Expect = 1e-62
 Identities = 215/245 (87%)
 Strand = Plus / Plus

                                                                         
Query: 164   gtcacgccgccattcgagcgagcgcctcgccggcacgctcgcctgtggacagccggagct 223
             |||| |||||||  || ||||||||||||||||| |||||||| ||||||||||||||| 
Sbjct: 92133 gtcaggccgccagacgcgcgagcgcctcgccggcgcgctcgccggtggacagccggagcc 92192

                                                                         
Query: 224   tcctgtagtcatcgtagttgaacggcttgaaccggcgcgggtgctgctcgtcgacgaacg 283
             ||| |||||| ||||| ||||||  | || |||||||||||||||   |||| || | | 
Sbjct: 92193 tccggtagtcgtcgtacttgaactccctgtaccggcgcgggtgctcgccgtccaccagct 92252

                                                                         
Query: 284   cctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaacatggcgatcgagatgc 343
             || ||||||||| |||| |||||||||||||||| |||||||||||||||||||| | ||
Sbjct: 92253 cccccggcgcgctcaccgtgtcgtccttgggcgccagcaggaacatggcgatcgacacgc 92312

                                                                         
Query: 344   gcggcacggccgccacgcactgcacccggtgcttcacggtgtgcagcctcccgttgctcc 403
             ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 92313 gcggcaccgccgccacgcactgcaccctgtgcttcacgttgtgcagcctcccgttgctcc 92372

                  
Query: 404   acgcc 408
             |||||
Sbjct: 92373 acgcc 92377



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                              
Query: 411   gccgacgtcgccgacgttgacaaggaacgagccggggacggggtcgacg 459
             ||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct: 92599 gccgacgtcgccgacgttgacgacgaacgagccggggagggggtcgacg 92647



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  248 bits (125), Expect = 1e-62
 Identities = 215/245 (87%)
 Strand = Plus / Plus

                                                                            
Query: 164      gtcacgccgccattcgagcgagcgcctcgccggcacgctcgcctgtggacagccggagct 223
                |||| |||||||  || ||||||||||||||||| |||||||| ||||||||||||||| 
Sbjct: 23771221 gtcaggccgccagacgcgcgagcgcctcgccggcgcgctcgccggtggacagccggagcc 23771280

                                                                            
Query: 224      tcctgtagtcatcgtagttgaacggcttgaaccggcgcgggtgctgctcgtcgacgaacg 283
                ||| |||||| ||||| ||||||  | || |||||||||||||||   |||| || | | 
Sbjct: 23771281 tccggtagtcgtcgtacttgaactccctgtaccggcgcgggtgctcgccgtccaccagct 23771340

                                                                            
Query: 284      cctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaacatggcgatcgagatgc 343
                || ||||||||| |||| |||||||||||||||| |||||||||||||||||||| | ||
Sbjct: 23771341 cccccggcgcgctcaccgtgtcgtccttgggcgccagcaggaacatggcgatcgacacgc 23771400

                                                                            
Query: 344      gcggcacggccgccacgcactgcacccggtgcttcacggtgtgcagcctcccgttgctcc 403
                ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 23771401 gcggcaccgccgccacgcactgcaccctgtgcttcacgttgtgcagcctcccgttgctcc 23771460

                     
Query: 404      acgcc 408
                |||||
Sbjct: 23771461 acgcc 23771465



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                                 
Query: 411      gccgacgtcgccgacgttgacaaggaacgagccggggacggggtcgacg 459
                ||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct: 23771687 gccgacgtcgccgacgttgacgacgaacgagccggggagggggtcgacg 23771735



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 2e-21
 Identities = 113/132 (85%)
 Strand = Plus / Plus

                                                                            
Query: 277      acgaacgcctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaacatggcgatc 336
                ||||||||||||||||||| ||||  ||||||||||||||| |||||||| |  ||||| 
Sbjct: 22920218 acgaacgcctccggcgcgcgcaccacgtcgtccttgggcgccagcaggaagagcgcgatg 22920277

                                                                            
Query: 337      gagatgcgcggcacggccgccacgcactgcacccggtgcttcacggtgtgcagcctcccg 396
                |||| |||| ||||  ||||||||||| | || |||||| ||||| ||||||||  ||||
Sbjct: 22920278 gagacgcgctgcacccccgccacgcaccgaacgcggtgcctcacgttgtgcagctccccg 22920337

                            
Query: 397      ttgctccacgcc 408
                ||||||||||||
Sbjct: 22920338 ttgctccacgcc 22920349



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                     
Query: 407      ccgtgccgacgtcgccgacgttgacaaggaacgagccggggacggggtcgacg 459
                ||||| |||||||||||| |||||| ||||||| |||||||| ||||||||||
Sbjct: 22920568 ccgtggcgacgtcgccgaggttgacgaggaacgtgccggggagggggtcgacg 22920620



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>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016G10
          Length = 143211

 Score =  111 bits (56), Expect = 2e-21
 Identities = 113/132 (85%)
 Strand = Plus / Plus

                                                                         
Query: 277   acgaacgcctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaacatggcgatc 336
             ||||||||||||||||||| ||||  ||||||||||||||| |||||||| |  ||||| 
Sbjct: 40020 acgaacgcctccggcgcgcgcaccacgtcgtccttgggcgccagcaggaagagcgcgatg 40079

                                                                         
Query: 337   gagatgcgcggcacggccgccacgcactgcacccggtgcttcacggtgtgcagcctcccg 396
             |||| |||| ||||  ||||||||||| | || |||||| ||||| ||||||||  ||||
Sbjct: 40080 gagacgcgctgcacccccgccacgcaccgaacgcggtgcctcacgttgtgcagctccccg 40139

                         
Query: 397   ttgctccacgcc 408
             ||||||||||||
Sbjct: 40140 ttgctccacgcc 40151



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 407   ccgtgccgacgtcgccgacgttgacaaggaacgagccggggacggggtcgacg 459
             ||||| |||||||||||| |||||| ||||||| |||||||| ||||||||||
Sbjct: 40370 ccgtggcgacgtcgccgaggttgacgaggaacgtgccggggagggggtcgacg 40422



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>emb|AL161626.20| Human DNA sequence from clone RP11-214N16 on chromosome 9 Contains the 3'
              end of the GCNT1 gene for glucosaminyl (N-acetyl)
              transferase 1 core 2
              (beta-1,6-N-acetylglucosaminyltransferase), a
              peptidylprolyl isomerase A (cyclophilin A) (PPIA)
              pseudogene and the 3' end of the KIAA0376 gene, complete
              sequence
          Length = 183858

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 26     tattgattgattgatgaaaaca 47
              ||||||||||||||||||||||
Sbjct: 152813 tattgattgattgatgaaaaca 152834



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>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete
              sequence
          Length = 150155

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    gcgagcgcctcgccggcacgc 201
              |||||||||||||||||||||
Sbjct: 121398 gcgagcgcctcgccggcacgc 121418



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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 281    acgcctccggcgcgcacaccc 301
              |||||||||||||||||||||
Sbjct: 606996 acgcctccggcgcgcacaccc 606976



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 181      gcgagcgcctcgccggcacgc 201
                |||||||||||||||||||||
Sbjct: 27182997 gcgagcgcctcgccggcacgc 27182977



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>emb|AL355493.14| Human DNA sequence from clone RP11-748L13 on chromosome 10 Contains the
              3' end of a novel pseudogene (FLJ10376), a pseudogene
              similar to part of breast cancer antigen NY-BR-1 (NY-BR-1),
              three novel pseudogenes and two CpG islands, complete
              sequence
          Length = 133954

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 378    cacggtgtgcagcctcccgtt 398
              |||||||||||||||||||||
Sbjct: 119524 cacggtgtgcagcctcccgtt 119544



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>gb|AC145753.1| Genomic sequence for Medicago truncatula, clone MTABa0058M19, complete
             sequence
          Length = 101565

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    atattattgattgattgatga 42
             |||||||||||||||||||||
Sbjct: 40685 atattattgattgattgatga 40705



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 181     gcgagcgcctcgccggcacgctcgc 205
               |||||||| ||||||||||||||||
Sbjct: 1618685 gcgagcgcatcgccggcacgctcgc 1618661



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>emb|CR925780.8| Zebrafish DNA sequence from clone CH211-112B19 in linkage group 5,
            complete sequence
          Length = 166407

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 25   ttattgattgattgatgaaaa 45
            |||||||||||||||||||||
Sbjct: 5908 ttattgattgattgatgaaaa 5928



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>emb|BX072578.10| Zebrafish DNA sequence from clone CH211-286A10 in linkage group 5,
              complete sequence
          Length = 183498

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 25     ttattgattgattgatgaaaa 45
              |||||||||||||||||||||
Sbjct: 118688 ttattgattgattgatgaaaa 118708



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 181      gcgagcgcctcgccggcacgc 201
                |||||||||||||||||||||
Sbjct: 27274320 gcgagcgcctcgccggcacgc 27274300



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>gb|AC005875.2|AC005875 citb_188_b_12, complete sequence
          Length = 131535

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 378   cacggtgtgcagcctcccgtt 398
             |||||||||||||||||||||
Sbjct: 89072 cacggtgtgcagcctcccgtt 89092



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>emb|BX927074.16| Zebrafish DNA sequence from clone DKEY-7L12 in linkage group 18, complete
              sequence
          Length = 152517

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 27     attgattgattgatgaaaaca 47
              |||||||||||||||||||||
Sbjct: 123756 attgattgattgatgaaaaca 123736



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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 185     gcgcctcgccggcacgctcg 204
               ||||||||||||||||||||
Sbjct: 3112401 gcgcctcgccggcacgctcg 3112420



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>gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosome 5, complete sequence
          Length = 176925

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     tgattgattgatgaaaacaa 48
              ||||||||||||||||||||
Sbjct: 126606 tgattgattgatgaaaacaa 126587



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>gb|AC164553.2| Mus musculus BAC clone RP23-361L12 from chromosome 14, complete sequence
          Length = 217754

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     tattattgattgattgatga 42
              ||||||||||||||||||||
Sbjct: 175496 tattattgattgattgatga 175515



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>ref|XM_858374.1| PREDICTED: Canis familiaris similar to UDP-glucose dehydrogenase,
           transcript variant 4 (LOC479107), mRNA
          Length = 1173

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 351 ggccgccacgcactgcaccc 370
           ||||||||||||||||||||
Sbjct: 132 ggccgccacgcactgcaccc 113



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>ref|XM_858347.1| PREDICTED: Canis familiaris similar to UDP-glucose dehydrogenase,
           transcript variant 3 (LOC479107), mRNA
          Length = 1001

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 351 ggccgccacgcactgcaccc 370
           ||||||||||||||||||||
Sbjct: 132 ggccgccacgcactgcaccc 113



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>ref|XM_536254.2| PREDICTED: Canis familiaris similar to UDP-glucose dehydrogenase,
           transcript variant 1 (LOC479107), mRNA
          Length = 2493

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 351 ggccgccacgcactgcaccc 370
           ||||||||||||||||||||
Sbjct: 132 ggccgccacgcactgcaccc 113



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>ref|XM_858307.1| PREDICTED: Canis familiaris similar to UDP-glucose dehydrogenase,
           transcript variant 2 (LOC479107), mRNA
          Length = 1352

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 351 ggccgccacgcactgcaccc 370
           ||||||||||||||||||||
Sbjct: 132 ggccgccacgcactgcaccc 113



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>gb|AC006337.5| Homo sapiens BAC clone RP11-535N23 from 7, complete sequence
          Length = 172291

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tattgattgattgatgaaaa 45
             ||||||||||||||||||||
Sbjct: 42850 tattgattgattgatgaaaa 42869



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>emb|AL157882.5| Human DNA sequence from clone RP11-202I11 on chromosome 9q21.32-22.2
             Contains the 5' end of the AGTPBP1 gene for  ATP/GTP
             binding protein 1 (NNA1, KIAA1035), a novel gene, the 5'
             end of a pseudogene similar to part of a novel protein
             (DKFZp434D0917) and a CpG island, complete sequence
          Length = 172903

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    gatattattgattgattgat 40
             ||||||||||||||||||||
Sbjct: 84864 gatattattgattgattgat 84845



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>gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, complete sequence
          Length = 173808

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    attgattgattgatgaaaac 46
             ||||||||||||||||||||
Sbjct: 24488 attgattgattgatgaaaac 24507



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 272     cgtcgacgaacgcctccggc 291
               ||||||||||||||||||||
Sbjct: 4294761 cgtcgacgaacgcctccggc 4294780



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>gb|AC109811.4| Homo sapiens BAC clone RP13-539F13 from 4, complete sequence
          Length = 93967

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    aattcacagcctcacttggt 72
             ||||||||||||||||||||
Sbjct: 50837 aattcacagcctcacttggt 50856



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>gb|AE004605.1| Pseudomonas aeruginosa PAO1, section 166 of 529 of the complete
            genome
          Length = 10949

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  gcctcgccggcacgctcgcc 206
            ||||||||||||||||||||
Sbjct: 9019 gcctcgccggcacgctcgcc 9000



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>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster,
             partial and complete cds
          Length = 113234

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   gcgggtgctgctcgtcgacg 279
             ||||||||||||||||||||
Sbjct: 69725 gcgggtgctgctcgtcgacg 69706



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>gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome 5, complete sequence
          Length = 211677

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    tgattgattgatgaaaacaa 48
             ||||||||||||||||||||
Sbjct: 39629 tgattgattgatgaaaacaa 39610



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>dbj|AB024746.1| Burkholderia sp. NK8 cat (catC, catB, catA) and cbe (cbeE, cbeR, cbeA,
             cbeB, cbeC, cbeD) operon, complete sequence
          Length = 12546

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   gcgcgggtgctgctcgtcga 277
             ||||||||||||||||||||
Sbjct: 10725 gcgcgggtgctgctcgtcga 10744


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,555,191
Number of Sequences: 3902068
Number of extensions: 2555191
Number of successful extensions: 110504
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109822
Number of HSP's gapped (non-prelim): 677
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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