| Clone Name | rbaet100f07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028J23, full insert sequence Length = 1624 Score = 309 bits (156), Expect = 4e-81 Identities = 261/296 (88%) Strand = Plus / Minus Query: 164 gtcacgccgccattcgagcgagcgcctcgccggcacgctcgcctgtggacagccggagct 223 |||| ||||||| || ||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 1326 gtcaggccgccagacgcgcgagcgcctcgccggcgcgctcgccggtggacagccggagcc 1267 Query: 224 tcctgtagtcatcgtagttgaacggcttgaaccggcgcgggtgctgctcgtcgacgaacg 283 ||| |||||| ||||| |||||| | || ||||||||||||||| |||| || | | Sbjct: 1266 tccggtagtcgtcgtacttgaactccctgtaccggcgcgggtgctcgccgtccaccagct 1207 Query: 284 cctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaacatggcgatcgagatgc 343 || ||||||||| |||| |||||||||||||||| |||||||||||||||||||| | || Sbjct: 1206 cccccggcgcgctcaccgtgtcgtccttgggcgccagcaggaacatggcgatcgacacgc 1147 Query: 344 gcggcacggccgccacgcactgcacccggtgcttcacggtgtgcagcctcccgttgctcc 403 ||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 1146 gcggcaccgccgccacgcactgcaccctgtgcttcacgttgtgcagcctcccgttgctcc 1087 Query: 404 acgccgtgccgacgtcgccgacgttgacaaggaacgagccggggacggggtcgacg 459 ||||| ||||||||||||||||||||| | |||||||||||||| |||||||||| Sbjct: 1086 acgcctggccgacgtcgccgacgttgacgacgaacgagccggggagggggtcgacg 1031
>dbj|AK105400.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C10, full insert sequence Length = 1608 Score = 309 bits (156), Expect = 4e-81 Identities = 261/296 (88%) Strand = Plus / Minus Query: 164 gtcacgccgccattcgagcgagcgcctcgccggcacgctcgcctgtggacagccggagct 223 |||| ||||||| || ||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 1324 gtcaggccgccagacgcgcgagcgcctcgccggcgcgctcgccggtggacagccggagcc 1265 Query: 224 tcctgtagtcatcgtagttgaacggcttgaaccggcgcgggtgctgctcgtcgacgaacg 283 ||| |||||| ||||| |||||| | || ||||||||||||||| |||| || | | Sbjct: 1264 tccggtagtcgtcgtacttgaactccctgtaccggcgcgggtgctcgccgtccaccagct 1205 Query: 284 cctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaacatggcgatcgagatgc 343 || ||||||||| |||| |||||||||||||||| |||||||||||||||||||| | || Sbjct: 1204 cccccggcgcgctcaccgtgtcgtccttgggcgccagcaggaacatggcgatcgacacgc 1145 Query: 344 gcggcacggccgccacgcactgcacccggtgcttcacggtgtgcagcctcccgttgctcc 403 ||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 1144 gcggcaccgccgccacgcactgcaccctgtgcttcacgttgtgcagcctcccgttgctcc 1085 Query: 404 acgccgtgccgacgtcgccgacgttgacaaggaacgagccggggacggggtcgacg 459 ||||| ||||||||||||||||||||| | |||||||||||||| |||||||||| Sbjct: 1084 acgcctggccgacgtcgccgacgttgacgacgaacgagccggggagggggtcgacg 1029
>ref|XM_472862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 903 Score = 307 bits (155), Expect = 2e-80 Identities = 248/279 (88%) Strand = Plus / Minus Query: 181 gcgagcgcctcgccggcacgctcgcctgtggacagccggagcttcctgtagtcatcgtag 240 ||||||||||||||||| |||||||| ||||||||||||||| ||| |||||| ||||| Sbjct: 887 gcgagcgcctcgccggcgcgctcgccggtggacagccggagcctccggtagtcgtcgtac 828 Query: 241 ttgaacggcttgaaccggcgcgggtgctgctcgtcgacgaacgcctccggcgcgcacacc 300 |||||| | || ||||||||||||||| |||| || | | || ||||||||| |||| Sbjct: 827 ttgaactccctgtaccggcgcgggtgctcgccgtccaccagctcccccggcgcgctcacc 768 Query: 301 ctgtcgtccttgggcgcgagcaggaacatggcgatcgagatgcgcggcacggccgccacg 360 |||||||||||||||| |||||||||||||||||||| | ||||||||| ||||||||| Sbjct: 767 gtgtcgtccttgggcgccagcaggaacatggcgatcgacacgcgcggcaccgccgccacg 708 Query: 361 cactgcacccggtgcttcacggtgtgcagcctcccgttgctccacgccgtgccgacgtcg 420 |||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 707 cactgcaccctgtgcttcacgttgtgcagcctcccgttgctccacgcctggccgacgtcg 648 Query: 421 ccgacgttgacaaggaacgagccggggacggggtcgacg 459 ||||||||||| | |||||||||||||| |||||||||| Sbjct: 647 ccgacgttgacgacgaacgagccggggagggggtcgacg 609
>gb|AY110273.1| Zea mays CL5678_1 mRNA sequence Length = 763 Score = 299 bits (151), Expect = 4e-78 Identities = 223/247 (90%) Strand = Plus / Plus Query: 209 tggacagccggagcttcctgtagtcatcgtagttgaacggcttgaaccggcgcgggtgct 268 |||||||||||||| ||| |||||| |||||||||||||||||| |||| |||||||| Sbjct: 207 tggacagccggagcctccggtagtcgtcgtagttgaacggcttgtaccgacgcgggtggc 266 Query: 269 gctcgtcgacgaacgcctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaaca 328 | ||||||| ||||||||||| |||| ||| | |||||||||||||||||||||||||| Sbjct: 267 ccgcgtcgaccaacgcctccggggcgctcacgcggtcgtccttgggcgcgagcaggaaca 326 Query: 329 tggcgatcgagatgcgcggcacggccgccacgcactgcacccggtgcttcacggtgtgca 388 ||||||| |||||||||||||||| ||| |||||| ||||||||||||||||| |||| | Sbjct: 327 tggcgatggagatgcgcggcacgggcgcgacgcaccgcacccggtgcttcacgttgtgga 386 Query: 389 gcctcccgttgctccacgccgtgccgacgtcgccgacgttgacaaggaacgagccgggga 448 |||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| || Sbjct: 387 gcctcccgttgctccacgccgtgccgacgtcgccgatgttgacgaggaaggagccggcga 446 Query: 449 cggggtc 455 ||||||| Sbjct: 447 cggggtc 453
>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence Length = 160155 Score = 248 bits (125), Expect = 1e-62 Identities = 215/245 (87%) Strand = Plus / Plus Query: 164 gtcacgccgccattcgagcgagcgcctcgccggcacgctcgcctgtggacagccggagct 223 |||| ||||||| || ||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 92133 gtcaggccgccagacgcgcgagcgcctcgccggcgcgctcgccggtggacagccggagcc 92192 Query: 224 tcctgtagtcatcgtagttgaacggcttgaaccggcgcgggtgctgctcgtcgacgaacg 283 ||| |||||| ||||| |||||| | || ||||||||||||||| |||| || | | Sbjct: 92193 tccggtagtcgtcgtacttgaactccctgtaccggcgcgggtgctcgccgtccaccagct 92252 Query: 284 cctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaacatggcgatcgagatgc 343 || ||||||||| |||| |||||||||||||||| |||||||||||||||||||| | || Sbjct: 92253 cccccggcgcgctcaccgtgtcgtccttgggcgccagcaggaacatggcgatcgacacgc 92312 Query: 344 gcggcacggccgccacgcactgcacccggtgcttcacggtgtgcagcctcccgttgctcc 403 ||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 92313 gcggcaccgccgccacgcactgcaccctgtgcttcacgttgtgcagcctcccgttgctcc 92372 Query: 404 acgcc 408 ||||| Sbjct: 92373 acgcc 92377 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 411 gccgacgtcgccgacgttgacaaggaacgagccggggacggggtcgacg 459 ||||||||||||||||||||| | |||||||||||||| |||||||||| Sbjct: 92599 gccgacgtcgccgacgttgacgacgaacgagccggggagggggtcgacg 92647
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 248 bits (125), Expect = 1e-62 Identities = 215/245 (87%) Strand = Plus / Plus Query: 164 gtcacgccgccattcgagcgagcgcctcgccggcacgctcgcctgtggacagccggagct 223 |||| ||||||| || ||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 23771221 gtcaggccgccagacgcgcgagcgcctcgccggcgcgctcgccggtggacagccggagcc 23771280 Query: 224 tcctgtagtcatcgtagttgaacggcttgaaccggcgcgggtgctgctcgtcgacgaacg 283 ||| |||||| ||||| |||||| | || ||||||||||||||| |||| || | | Sbjct: 23771281 tccggtagtcgtcgtacttgaactccctgtaccggcgcgggtgctcgccgtccaccagct 23771340 Query: 284 cctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaacatggcgatcgagatgc 343 || ||||||||| |||| |||||||||||||||| |||||||||||||||||||| | || Sbjct: 23771341 cccccggcgcgctcaccgtgtcgtccttgggcgccagcaggaacatggcgatcgacacgc 23771400 Query: 344 gcggcacggccgccacgcactgcacccggtgcttcacggtgtgcagcctcccgttgctcc 403 ||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 23771401 gcggcaccgccgccacgcactgcaccctgtgcttcacgttgtgcagcctcccgttgctcc 23771460 Query: 404 acgcc 408 ||||| Sbjct: 23771461 acgcc 23771465 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 411 gccgacgtcgccgacgttgacaaggaacgagccggggacggggtcgacg 459 ||||||||||||||||||||| | |||||||||||||| |||||||||| Sbjct: 23771687 gccgacgtcgccgacgttgacgacgaacgagccggggagggggtcgacg 23771735
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 277 acgaacgcctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaacatggcgatc 336 ||||||||||||||||||| |||| ||||||||||||||| |||||||| | ||||| Sbjct: 22920218 acgaacgcctccggcgcgcgcaccacgtcgtccttgggcgccagcaggaagagcgcgatg 22920277 Query: 337 gagatgcgcggcacggccgccacgcactgcacccggtgcttcacggtgtgcagcctcccg 396 |||| |||| |||| ||||||||||| | || |||||| ||||| |||||||| |||| Sbjct: 22920278 gagacgcgctgcacccccgccacgcaccgaacgcggtgcctcacgttgtgcagctccccg 22920337 Query: 397 ttgctccacgcc 408 |||||||||||| Sbjct: 22920338 ttgctccacgcc 22920349 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 407 ccgtgccgacgtcgccgacgttgacaaggaacgagccggggacggggtcgacg 459 ||||| |||||||||||| |||||| ||||||| |||||||| |||||||||| Sbjct: 22920568 ccgtggcgacgtcgccgaggttgacgaggaacgtgccggggagggggtcgacg 22920620
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 277 acgaacgcctccggcgcgcacaccctgtcgtccttgggcgcgagcaggaacatggcgatc 336 ||||||||||||||||||| |||| ||||||||||||||| |||||||| | ||||| Sbjct: 40020 acgaacgcctccggcgcgcgcaccacgtcgtccttgggcgccagcaggaagagcgcgatg 40079 Query: 337 gagatgcgcggcacggccgccacgcactgcacccggtgcttcacggtgtgcagcctcccg 396 |||| |||| |||| ||||||||||| | || |||||| ||||| |||||||| |||| Sbjct: 40080 gagacgcgctgcacccccgccacgcaccgaacgcggtgcctcacgttgtgcagctccccg 40139 Query: 397 ttgctccacgcc 408 |||||||||||| Sbjct: 40140 ttgctccacgcc 40151 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 407 ccgtgccgacgtcgccgacgttgacaaggaacgagccggggacggggtcgacg 459 ||||| |||||||||||| |||||| ||||||| |||||||| |||||||||| Sbjct: 40370 ccgtggcgacgtcgccgaggttgacgaggaacgtgccggggagggggtcgacg 40422
>emb|AL161626.20| Human DNA sequence from clone RP11-214N16 on chromosome 9 Contains the 3' end of the GCNT1 gene for glucosaminyl (N-acetyl) transferase 1 core 2 (beta-1,6-N-acetylglucosaminyltransferase), a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene and the 3' end of the KIAA0376 gene, complete sequence Length = 183858 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 26 tattgattgattgatgaaaaca 47 |||||||||||||||||||||| Sbjct: 152813 tattgattgattgatgaaaaca 152834
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence Length = 150155 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 gcgagcgcctcgccggcacgc 201 ||||||||||||||||||||| Sbjct: 121398 gcgagcgcctcgccggcacgc 121418
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 acgcctccggcgcgcacaccc 301 ||||||||||||||||||||| Sbjct: 606996 acgcctccggcgcgcacaccc 606976
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 gcgagcgcctcgccggcacgc 201 ||||||||||||||||||||| Sbjct: 27182997 gcgagcgcctcgccggcacgc 27182977
>emb|AL355493.14| Human DNA sequence from clone RP11-748L13 on chromosome 10 Contains the 3' end of a novel pseudogene (FLJ10376), a pseudogene similar to part of breast cancer antigen NY-BR-1 (NY-BR-1), three novel pseudogenes and two CpG islands, complete sequence Length = 133954 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 cacggtgtgcagcctcccgtt 398 ||||||||||||||||||||| Sbjct: 119524 cacggtgtgcagcctcccgtt 119544
>gb|AC145753.1| Genomic sequence for Medicago truncatula, clone MTABa0058M19, complete sequence Length = 101565 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 atattattgattgattgatga 42 ||||||||||||||||||||| Sbjct: 40685 atattattgattgattgatga 40705
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 181 gcgagcgcctcgccggcacgctcgc 205 |||||||| |||||||||||||||| Sbjct: 1618685 gcgagcgcatcgccggcacgctcgc 1618661
>emb|CR925780.8| Zebrafish DNA sequence from clone CH211-112B19 in linkage group 5, complete sequence Length = 166407 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 ttattgattgattgatgaaaa 45 ||||||||||||||||||||| Sbjct: 5908 ttattgattgattgatgaaaa 5928
>emb|BX072578.10| Zebrafish DNA sequence from clone CH211-286A10 in linkage group 5, complete sequence Length = 183498 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 ttattgattgattgatgaaaa 45 ||||||||||||||||||||| Sbjct: 118688 ttattgattgattgatgaaaa 118708
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 gcgagcgcctcgccggcacgc 201 ||||||||||||||||||||| Sbjct: 27274320 gcgagcgcctcgccggcacgc 27274300
>gb|AC005875.2|AC005875 citb_188_b_12, complete sequence Length = 131535 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 cacggtgtgcagcctcccgtt 398 ||||||||||||||||||||| Sbjct: 89072 cacggtgtgcagcctcccgtt 89092
>emb|BX927074.16| Zebrafish DNA sequence from clone DKEY-7L12 in linkage group 18, complete sequence Length = 152517 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 attgattgattgatgaaaaca 47 ||||||||||||||||||||| Sbjct: 123756 attgattgattgatgaaaaca 123736
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 gcgcctcgccggcacgctcg 204 |||||||||||||||||||| Sbjct: 3112401 gcgcctcgccggcacgctcg 3112420
>gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosome 5, complete sequence Length = 176925 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tgattgattgatgaaaacaa 48 |||||||||||||||||||| Sbjct: 126606 tgattgattgatgaaaacaa 126587
>gb|AC164553.2| Mus musculus BAC clone RP23-361L12 from chromosome 14, complete sequence Length = 217754 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 tattattgattgattgatga 42 |||||||||||||||||||| Sbjct: 175496 tattattgattgattgatga 175515
>ref|XM_858374.1| PREDICTED: Canis familiaris similar to UDP-glucose dehydrogenase, transcript variant 4 (LOC479107), mRNA Length = 1173 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 ggccgccacgcactgcaccc 370 |||||||||||||||||||| Sbjct: 132 ggccgccacgcactgcaccc 113
>ref|XM_858347.1| PREDICTED: Canis familiaris similar to UDP-glucose dehydrogenase, transcript variant 3 (LOC479107), mRNA Length = 1001 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 ggccgccacgcactgcaccc 370 |||||||||||||||||||| Sbjct: 132 ggccgccacgcactgcaccc 113
>ref|XM_536254.2| PREDICTED: Canis familiaris similar to UDP-glucose dehydrogenase, transcript variant 1 (LOC479107), mRNA Length = 2493 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 ggccgccacgcactgcaccc 370 |||||||||||||||||||| Sbjct: 132 ggccgccacgcactgcaccc 113
>ref|XM_858307.1| PREDICTED: Canis familiaris similar to UDP-glucose dehydrogenase, transcript variant 2 (LOC479107), mRNA Length = 1352 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 ggccgccacgcactgcaccc 370 |||||||||||||||||||| Sbjct: 132 ggccgccacgcactgcaccc 113
>gb|AC006337.5| Homo sapiens BAC clone RP11-535N23 from 7, complete sequence Length = 172291 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tattgattgattgatgaaaa 45 |||||||||||||||||||| Sbjct: 42850 tattgattgattgatgaaaa 42869
>emb|AL157882.5| Human DNA sequence from clone RP11-202I11 on chromosome 9q21.32-22.2 Contains the 5' end of the AGTPBP1 gene for ATP/GTP binding protein 1 (NNA1, KIAA1035), a novel gene, the 5' end of a pseudogene similar to part of a novel protein (DKFZp434D0917) and a CpG island, complete sequence Length = 172903 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 gatattattgattgattgat 40 |||||||||||||||||||| Sbjct: 84864 gatattattgattgattgat 84845
>gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, complete sequence Length = 173808 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 attgattgattgatgaaaac 46 |||||||||||||||||||| Sbjct: 24488 attgattgattgatgaaaac 24507
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 cgtcgacgaacgcctccggc 291 |||||||||||||||||||| Sbjct: 4294761 cgtcgacgaacgcctccggc 4294780
>gb|AC109811.4| Homo sapiens BAC clone RP13-539F13 from 4, complete sequence Length = 93967 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 aattcacagcctcacttggt 72 |||||||||||||||||||| Sbjct: 50837 aattcacagcctcacttggt 50856
>gb|AE004605.1| Pseudomonas aeruginosa PAO1, section 166 of 529 of the complete genome Length = 10949 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gcctcgccggcacgctcgcc 206 |||||||||||||||||||| Sbjct: 9019 gcctcgccggcacgctcgcc 9000
>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster, partial and complete cds Length = 113234 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 gcgggtgctgctcgtcgacg 279 |||||||||||||||||||| Sbjct: 69725 gcgggtgctgctcgtcgacg 69706
>gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome 5, complete sequence Length = 211677 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tgattgattgatgaaaacaa 48 |||||||||||||||||||| Sbjct: 39629 tgattgattgatgaaaacaa 39610
>dbj|AB024746.1| Burkholderia sp. NK8 cat (catC, catB, catA) and cbe (cbeE, cbeR, cbeA, cbeB, cbeC, cbeD) operon, complete sequence Length = 12546 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gcgcgggtgctgctcgtcga 277 |||||||||||||||||||| Sbjct: 10725 gcgcgggtgctgctcgtcga 10744 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,555,191 Number of Sequences: 3902068 Number of extensions: 2555191 Number of successful extensions: 110504 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109822 Number of HSP's gapped (non-prelim): 677 length of query: 461 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 439 effective length of database: 17,147,199,772 effective search space: 7527620699908 effective search space used: 7527620699908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)