ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet100f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CP2S1_MOUSE (Q9DBX6) Cytochrome P450 2S1 (EC 1.14.14.1) (CYPIIS1) 32 0.87
213S3_FAGES (Q9XFM4) 13S globulin seed storage protein 3 precurso... 30 2.5
3TSL1_YEAST (P38427) Trehalose synthase complex regulatory subuni... 29 5.6
4ORB2_DROME (Q9VSR3) Probable RNA-binding protein orb2 29 5.6
513S1_FAGES (O23878) 13S globulin seed storage protein 1 precurso... 29 5.6
6CR9CA_BACTO (Q45733) Pesticidal crystal protein cry9Ca (Insectic... 28 9.6

>CP2S1_MOUSE (Q9DBX6) Cytochrome P450 2S1 (EC 1.14.14.1) (CYPIIS1)|
          Length = 501

 Score = 32.0 bits (71), Expect = 0.87
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +3

Query: 174 GISQAWQQANTLSNLILLQLETPFVTVANHIGTAIFFLVIMTPG*SVKTHQRLYQRRTPQ 353
           GIS  W QA  + + +L  L  P   + +H+GT   F +       V+ HQ  +Q   P 
Sbjct: 212 GISSPWGQAYEMFSWLLQPLPGPHTQLQHHLGTLAAFTIQ-----QVQKHQGRFQTSGPA 266

Query: 354 TD 359
            D
Sbjct: 267 RD 268



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>13S3_FAGES (Q9XFM4) 13S globulin seed storage protein 3 precursor|
           (Legumin-like protein 3) (Allergen Fag e 1) [Contains:
           13S globulin seed storage protein 3 acidic chain; 13S
           globulin seed storage protein 3 basic chain]
          Length = 538

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 334 INEEHHKQTHQSRNSDHQLTAERERHLRQLMCNLSLRHKNDRPTRA 471
           + EE+ ++  + R    +  + R   L Q  CNL  R   +RP+RA
Sbjct: 323 VPEEYEEELQRERGDRKRGGSGRSNGLEQAFCNLKFRQNVNRPSRA 368



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>TSL1_YEAST (P38427) Trehalose synthase complex regulatory subunit TSL1|
           (Alpha,alpha-trehalose-phosphate synthase [UDP-forming]
           123 kDa subunit)
          Length = 1098

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 275 HLLLGYNDSRVICEDSSEIVSTKNTT-NRPTSPGIRIIN*LPSGSAI*GSSCATCP 439
           H LL       +   ++ IV+ K+   NRPTS    ++N    GSA  GSS ++ P
Sbjct: 185 HSLLNNTSQTSLEGPNNHIVTPKSRAGNRPTSAATSLVNRTKQGSASSGSSGSSAP 240



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>ORB2_DROME (Q9VSR3) Probable RNA-binding protein orb2|
          Length = 704

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 334 INEEHHKQTHQSRNSDHQLTAERERHLRQLMCNLSLRH 447
           ++++ H+Q HQ ++  HQ   +  +H +QL  NLS  H
Sbjct: 177 LHQQQHQQQHQ-QHQQHQQQQQLHQHQQQLSPNLSALH 213



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>13S1_FAGES (O23878) 13S globulin seed storage protein 1 precursor|
           (Legumin-like protein 1) [Contains: 13S globulin seed
           storage protein 1 acidic chain; 13S globulin seed
           storage protein 1 basic chain]
          Length = 565

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 334 INEEHHKQTHQSRNSDHQLTAERERHLRQLMCNLSLRHKNDRPTRA 471
           + EE+ ++  + R    +  + R   L Q  CNL  +   +RP+RA
Sbjct: 353 VPEEYEEELQRERGDRKRGGSGRSNGLEQAFCNLKFKQNVNRPSRA 398



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>CR9CA_BACTO (Q45733) Pesticidal crystal protein cry9Ca (Insecticidal|
           delta-endotoxin CryIXC(a)) (Crystaline entomocidal
           protoxin) (130 kDa crystal protein)
          Length = 1157

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 215 LNIITTRDPFRHCCKSYWHGHLL-LGYNDSRVICEDSSEIVSTKNTTNRPTSPG 373
           L I + R P       YW GH L   Y +   + EDS  +++T   T  P   G
Sbjct: 353 LTISSNRFPVSSNFMDYWSGHTLRRSYLNDSAVQEDSYGLITTTRATINPGVDG 406


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,296,257
Number of Sequences: 219361
Number of extensions: 1352727
Number of successful extensions: 4073
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4069
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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