ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet100e11 |
|---|---|
| Clone Library Name | barley_pub |
>NQR1_ORYSA (Q941Z0) Putative NADPH:quinone oxidoreductase 1 (EC 1.6.5.2)| Length = 197 Score = 135 bits (341), Expect = 2e-32 Identities = 65/72 (90%), Positives = 70/72 (97%) Frame = -2 Query: 408 GFGGGRSQYHLRQVGVFLDLHFINKPELFVQAFQQPPKFDSDGNLIDAEIRERIKKVLLS 229 GFGGGRSQYHLRQVGVFLDLHFINKPEL V+AF+QPPKFDSDGNLIDA+IRERIK+VLLS Sbjct: 126 GFGGGRSQYHLRQVGVFLDLHFINKPELAVKAFEQPPKFDSDGNLIDAQIRERIKQVLLS 185 Query: 228 LQAFTLRIQNKD 193 LQAFTLR+Q KD Sbjct: 186 LQAFTLRLQKKD 197
>NQR_ARATH (Q9LK88) NADPH:quinone oxidoreductase (EC 1.6.5.2)| Length = 196 Score = 115 bits (288), Expect = 2e-26 Identities = 53/71 (74%), Positives = 62/71 (87%) Frame = -2 Query: 408 GFGGGRSQYHLRQVGVFLDLHFINKPELFVQAFQQPPKFDSDGNLIDAEIRERIKKVLLS 229 GFGGGRSQYHLRQ+GVFLDLHFINKPE + AFQ P KFD++GNL+D +ER+K+VLLS Sbjct: 126 GFGGGRSQYHLRQIGVFLDLHFINKPEFTLNAFQPPQKFDAEGNLVDEVTKERLKQVLLS 185 Query: 228 LQAFTLRIQNK 196 LQAFTLR+Q K Sbjct: 186 LQAFTLRLQGK 196
>NQR_SOLTU (Q8H9D2) NAD(P)H:quinone oxidoreductase (EC 1.6.5.2) (NAD(P)H:QR)| Length = 194 Score = 113 bits (282), Expect = 1e-25 Identities = 51/71 (71%), Positives = 61/71 (85%) Frame = -2 Query: 408 GFGGGRSQYHLRQVGVFLDLHFINKPELFVQAFQQPPKFDSDGNLIDAEIRERIKKVLLS 229 GFGGGRSQYHLRQ+GVFLDLHFINKPE F+ AFQQPPKFDSDG L D E ++R++ VLL+ Sbjct: 122 GFGGGRSQYHLRQIGVFLDLHFINKPEFFLNAFQQPPKFDSDGVLTDEETKQRLRAVLLA 181 Query: 228 LQAFTLRIQNK 196 LQA L+++ K Sbjct: 182 LQALALKLKGK 192
>NQR2_ORYSA (Q941Y8) Putative NADPH:quinone oxidoreductase 2 (EC 1.6.5.2)| Length = 203 Score = 110 bits (276), Expect = 6e-25 Identities = 51/71 (71%), Positives = 60/71 (84%) Frame = -2 Query: 408 GFGGGRSQYHLRQVGVFLDLHFINKPELFVQAFQQPPKFDSDGNLIDAEIRERIKKVLLS 229 G GG RS YH+RQVGVFLD+HFINKPE+F++A Q P KFDSDGNLID EI+E +K +LLS Sbjct: 125 GSGGSRSMYHIRQVGVFLDIHFINKPEVFIKAHQPPKKFDSDGNLIDPEIKEELKDMLLS 184 Query: 228 LQAFTLRIQNK 196 LQAF LR+Q K Sbjct: 185 LQAFALRLQGK 195
>YIEF_SHIFL (P0AGE8) Hypothetical protein yieF| Length = 188 Score = 41.6 bits (96), Expect = 5e-04 Identities = 25/67 (37%), Positives = 34/67 (50%) Frame = -2 Query: 402 GGGRSQYHLRQVGVFLDLHFINKPELFVQAFQQPPKFDSDGNLIDAEIRERIKKVLLSLQ 223 GG R QYHLRQ+ VFLD +NKPE F+ Q G +ID + + L + Sbjct: 122 GGARCQYHLRQILVFLDAMVMNKPE-FMGGVIQNKVDPQTGEVIDQGTLDHLTGQLTAFG 180 Query: 222 AFTLRIQ 202 F R++ Sbjct: 181 EFIQRVK 187
>YIEF_ECOLI (P0AGE6) Hypothetical protein yieF| Length = 188 Score = 41.6 bits (96), Expect = 5e-04 Identities = 25/67 (37%), Positives = 34/67 (50%) Frame = -2 Query: 402 GGGRSQYHLRQVGVFLDLHFINKPELFVQAFQQPPKFDSDGNLIDAEIRERIKKVLLSLQ 223 GG R QYHLRQ+ VFLD +NKPE F+ Q G +ID + + L + Sbjct: 122 GGARCQYHLRQILVFLDAMVMNKPE-FMGGVIQNKVDPQTGEVIDQGTLDHLTGQLTAFG 180 Query: 222 AFTLRIQ 202 F R++ Sbjct: 181 EFIQRVK 187
>YIEF_ECO57 (P0AGE7) Hypothetical protein yieF| Length = 188 Score = 41.6 bits (96), Expect = 5e-04 Identities = 25/67 (37%), Positives = 34/67 (50%) Frame = -2 Query: 402 GGGRSQYHLRQVGVFLDLHFINKPELFVQAFQQPPKFDSDGNLIDAEIRERIKKVLLSLQ 223 GG R QYHLRQ+ VFLD +NKPE F+ Q G +ID + + L + Sbjct: 122 GGARCQYHLRQILVFLDAMVMNKPE-FMGGVIQNKVDPQTGEVIDQGTLDHLTGQLTAFG 180 Query: 222 AFTLRIQ 202 F R++ Sbjct: 181 EFIQRVK 187
>VSMP_CVBM (P15779) Putative small membrane protein (sM protein)| (Nonstructural protein NS3) Length = 84 Score = 30.8 bits (68), Expect = 0.80 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -1 Query: 163 IFFTLVICALVIV*YMPYLTTFLLPIQIPVMC 68 I F + IC LVI+ + +L TF L IQ+ MC Sbjct: 18 IIFIVAICLLVIIVVVAFLATFKLCIQLCGMC 49
>VSMP_CVBF (P15775) Putative small membrane protein (sM protein)| (Nonstructural protein NS3) Length = 84 Score = 30.8 bits (68), Expect = 0.80 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -1 Query: 163 IFFTLVICALVIV*YMPYLTTFLLPIQIPVMC 68 I F + IC LVI+ + +L TF L IQ+ MC Sbjct: 18 IIFIVAICLLVIIVVVAFLATFKLCIQLCGMC 49
>RECR_FRATT (Q5NGM6) Recombination protein recR| Length = 200 Score = 30.4 bits (67), Expect = 1.0 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +1 Query: 193 ILILDPECEGLEGQKHFLDPL--SDLSVNQISIAVELGGLLKCLDKQLWL 336 IL + P EG E HF+ + D+ +++I V GG L+ LD+Q L Sbjct: 143 ILAISPTVEG-ETTAHFISQMIAKDIKISRIGFGVPFGGELEYLDQQTLL 191
>DMI1_MEDTR (Q6RHR6) Putative ion channel DMI-1 (Does not make infections| protein 1) Length = 882 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = -1 Query: 163 IFFTLVICALVIV*YMPYLTTFLLPIQ-IPVMCCLQNEICNKS 38 IF+ LVIC +++V Y YL L ++ + + C Q + C+++ Sbjct: 131 IFYLLVICCIILVPYSAYLQYKLAKLKDMKLQLCGQIDFCSRN 173
>AGLU_SULSO (O59645) Alpha-glucosidase (EC 3.2.1.20) (Maltase)| Length = 693 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -2 Query: 375 RQVGVFLDLHFINKPELFVQAFQQPPKFDSDGNLIDAEIRERIKKVLL 232 R GVFLD+H+++ +LF P +F LID + +K + + Sbjct: 205 RVAGVFLDIHYMDSYKLFT---WHPYRFPEPKKLIDELHKRNVKLITI 249
>FOSL1_MOUSE (P48755) Fos-related antigen 1 (FRA-1)| Length = 273 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Frame = +1 Query: 4 RKRNPPQ----TAEQQIYYRFHSADNTSQESEWEVK 99 R PPQ TA+QQ ++ S D++SQE W V+ Sbjct: 20 RPAQPPQAQAQTAQQQKFHLVPSIDSSSQELHWMVQ 55
>YO047_YEAST (Q08218) Uncharacterized protein YOL047C| Length = 356 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = -1 Query: 172 LICIFFTLVICALVIV*YMPYLTTFLLPIQIPVMCCLQNEICN 44 LI F +++ +L++ Y+P+L F LP+ + +CN Sbjct: 109 LIVAFTSILAWSLLVCIYLPFLGLFALPLAYMQTILISTTLCN 151
>IWS1_NEUCR (Q870S2) Transcription factor iws-1| Length = 430 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +1 Query: 199 ILDPECEGLEGQKHFLDPLSDLSVNQISI 285 +LDPE L+ ++FL+PL+D S+ +I Sbjct: 235 VLDPEINFLQSVRYFLEPLNDGSLPAYNI 263
>IWS1_ASPFU (Q4WSM6) Transcription factor iws1| Length = 460 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 199 ILDPECEGLEGQKHFLDPLSDLSVNQISIAVEL 297 ++DPE LE K FL+PL D S+ +I +L Sbjct: 268 LVDPEINLLEAVKFFLEPLDDGSLPAYNIQRDL 300
>IWS1_EMENI (Q5BEG5) Transcription factor iws1| Length = 429 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 199 ILDPECEGLEGQKHFLDPLSDLSVNQISIAVEL 297 ++DPE LE K FL+PL D S+ +I +L Sbjct: 235 LVDPEINLLEAVKFFLEPLDDGSLPAYNIQRDL 267
>LCAP_HUMAN (Q9UIQ6) Leucyl-cystinyl aminopeptidase (EC 3.4.11.3) (Cystinyl| aminopeptidase) (Oxytocinase) (OTase) (Insulin-regulated membrane aminopeptidase) (Insulin-responsive aminopeptidase) (IRAP) (Placental leucine aminopeptidase) (P-LAP) Length = 1025 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +2 Query: 218 KAWRDKSTFLIRSLISASIKFPSLSNLGGC 307 + W D+ T +R L SA ++F NLG C Sbjct: 806 QTWTDEGTPSMRELRSALLEFACTHNLGNC 835
>NPTX2_HUMAN (P47972) Neuronal pentraxin-2 precursor (NP2) (Neuronal pentraxin| II) (NP-II) Length = 431 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -2 Query: 315 AFQQPPKFDSDGNLIDAEIRERIKKVLLSLQAFTLRIQNKD*SNPGLG 172 AF+ P F L + +IKK L L AFT+ + + ++PG+G Sbjct: 218 AFKSPDAFKVSLPLRTNYLYGKIKKTLPELYAFTICLWLRSSASPGIG 265
>OL508_MOUSE (Q8VG42) Olfactory receptor 508 (Olfactory receptor 204-6)| Length = 310 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Frame = +2 Query: 290 SNLGGC*NAWTNSSGLLMK*RSKNTPTCR-----RWYCDLPP 400 S LGGC NAWT + LL N CR ++CD P Sbjct: 148 SYLGGCVNAWTFTGCLL------NLSFCRPNKVNHFFCDYSP 183
>NPTX2_RAT (P97738) Neuronal pentraxin-2 precursor (NP2) (Neuronal pentraxin| II) (NP-II) (Neuronal activity-regulated pentraxin) Length = 432 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -2 Query: 315 AFQQPPKFDSDGNLIDAEIRERIKKVLLSLQAFTLRIQNKD*SNPGLG 172 AF+ P F L + +IKK L L AFT+ + + ++PG+G Sbjct: 219 AFKSPDAFKVSLPLRTNYLYGKIKKTLPELYAFTICLWLRSSASPGIG 266
>NPTX2_MOUSE (O70340) Neuronal pentraxin-2 precursor (NP2) (Neuronal pentraxin| II) (NP-II) Length = 429 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -2 Query: 315 AFQQPPKFDSDGNLIDAEIRERIKKVLLSLQAFTLRIQNKD*SNPGLG 172 AF+ P F L + +IKK L L AFT+ + + ++PG+G Sbjct: 216 AFKSPDAFKVSLPLRTNYLYGKIKKTLPELYAFTICLWLRSSASPGIG 263
>PRGC1_RAT (Q9QYK2) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Frame = +1 Query: 205 DPECEGLEGQKHFLDP------LSDLSVNQISIAVELGGLLKCLDK 324 D EC L G+ L P LS+L VN + LGGL C D+ Sbjct: 14 DIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQ 59
>PRGC1_PIG (Q865B6) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Frame = +1 Query: 205 DPECEGLEGQKHFLDP------LSDLSVNQISIAVELGGLLKCLDK 324 D EC L G+ L P LS+L VN + LGGL C D+ Sbjct: 14 DIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQ 59
>PRGC1_MOUSE (O70343) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 797 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Frame = +1 Query: 205 DPECEGLEGQKHFLDP------LSDLSVNQISIAVELGGLLKCLDK 324 D EC L G+ L P LS+L VN + LGGL C D+ Sbjct: 14 DIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQ 59
>PRGC1_BOVIN (Q865B7) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Frame = +1 Query: 205 DPECEGLEGQKHFLDP------LSDLSVNQISIAVELGGLLKCLDK 324 D EC L G+ L P LS+L VN + LGGL C D+ Sbjct: 14 DIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQ 59
>ARE2_SACBA (Q876L2) Sterol O-acyltransferase 2 (EC 2.3.1.26) (Sterol-ester| synthase 2) Length = 650 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = -2 Query: 396 GRSQYHLRQ---VGVFLDLHFINKPELFVQAFQQPPKFDSDGNLIDAEIRERIKKVL 235 G+S+Y + F D+ F N+P + + P K G ++ EIR+R K+++ Sbjct: 116 GKSRYRKGSSNFISFFDDMAFENRPSILDGSVNDPFKTKFVGPTLEKEIRKREKELM 172
>PRGC1_HUMAN (Q9UBK2) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) (Ligand effect modulator 6) Length = 798 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Frame = +1 Query: 205 DPECEGLEGQKHFLDP------LSDLSVNQISIAVELGGLLKCLDK 324 D EC L G+ L P LS+L VN + LGGL C D+ Sbjct: 16 DIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQ 61 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,464,000 Number of Sequences: 219361 Number of extensions: 1232392 Number of successful extensions: 3292 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3215 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3292 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
