ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet100d08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105945.1| Zea mays PCO115682 mRNA sequence Length = 947 Score = 172 bits (87), Expect = 6e-40 Identities = 161/185 (87%), Gaps = 3/185 (1%) Strand = Plus / Minus Query: 255 ggcggcacggcgcagccgcagtcgttgacgagcagctggagggcgaggggcacgtagagg 314 ||||| |||||||||||||||| ||||||||| || ||| |||| ||||||||||| | Sbjct: 631 ggcgggacggcgcagccgcagt---tgacgagcacctcgagcgcgatgggcacgtagacg 575 Query: 315 gcgaggttgagcaccttggccttgatggcggtgcagaggcacgccgcggcggtgagcccg 374 | || || ||||||||||||||||||||||||||| ||||||||||| |||| ||||||| Sbjct: 574 gagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggagagcccg 515 Query: 375 gcgatgccctgcaccagggggcagcacttgacgctggcgtcgccgatgtggagctcgttg 434 |||||||||| ||| || |||||||||| |||| |||||||||||| ||| | |||||| Sbjct: 514 gcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacctcgttc 455 Query: 435 ccgag 439 ||||| Sbjct: 454 ccgag 450
>ref|XM_474092.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 783 Score = 143 bits (72), Expect = 6e-31 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 238 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 297 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 781 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 725 Query: 298 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgcagaggcacg 357 ||| ||| | ||||| | || || ||||||||||||||||||||||||||||||||| | Sbjct: 724 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcagaggcagg 665 Query: 358 ccgcggcggtgagcccggcgatgccctgcaccagggggcagcacttgacgctggcgtcgc 417 | ||||||| || ||||||||| ||| |||||| ||||||||| | ||| |||||||| Sbjct: 664 cggcggcggacaggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgc 605 Query: 418 cgatgtggagctcgttgccgag 439 ||||||| | |||||||||||| Sbjct: 604 cgatgtgcacctcgttgccgag 583
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 143 bits (72), Expect = 6e-31 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 238 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 297 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 32827138 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 32827194 Query: 298 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgcagaggcacg 357 ||| ||| | ||||| | || || ||||||||||||||||||||||||||||||||| | Sbjct: 32827195 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcagaggcagg 32827254 Query: 358 ccgcggcggtgagcccggcgatgccctgcaccagggggcagcacttgacgctggcgtcgc 417 | ||||||| || ||||||||| ||| |||||| ||||||||| | ||| |||||||| Sbjct: 32827255 cggcggcggacaggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgc 32827314 Query: 418 cgatgtggagctcgttgccgag 439 ||||||| | |||||||||||| Sbjct: 32827315 cgatgtgcacctcgttgccgag 32827336 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||| |||||||||||||||||||||||||||| Sbjct: 31096025 gagcgccttggccttgatggcggtgcagaggca 31095993 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||| |||||||||||||||||||||||||||| Sbjct: 31085606 gagcgccttggccttgatggcggtgcagaggca 31085574 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||||||| ||||||||||| Sbjct: 27727062 gagcacgttggccttgatggccgtgcagaggca 27727030 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gacgagcagctggagggcga 300 |||||||||||||||||||| Sbjct: 28874424 gacgagcagctggagggcga 28874405 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 334 ccttgatggcggtgcagaggcacgccgc 361 |||||||||| |||||||||||| |||| Sbjct: 27716919 ccttgatggccgtgcagaggcacaccgc 27716892
>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full insert sequence Length = 1255 Score = 143 bits (72), Expect = 6e-31 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 238 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 297 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 931 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 875 Query: 298 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgcagaggcacg 357 ||| ||| | ||||| | || || ||||||||||||||||||||||||||||||||| | Sbjct: 874 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcagaggcagg 815 Query: 358 ccgcggcggtgagcccggcgatgccctgcaccagggggcagcacttgacgctggcgtcgc 417 | ||||||| || ||||||||| ||| |||||| ||||||||| | ||| |||||||| Sbjct: 814 cggcggcggacaggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgc 755 Query: 418 cgatgtggagctcgttgccgag 439 ||||||| | |||||||||||| Sbjct: 754 cgatgtgcacctcgttgccgag 733
>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full insert sequence Length = 1242 Score = 143 bits (72), Expect = 6e-31 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 238 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 297 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 931 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 875 Query: 298 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgcagaggcacg 357 ||| ||| | ||||| | || || ||||||||||||||||||||||||||||||||| | Sbjct: 874 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcagaggcagg 815 Query: 358 ccgcggcggtgagcccggcgatgccctgcaccagggggcagcacttgacgctggcgtcgc 417 | ||||||| || ||||||||| ||| |||||| ||||||||| | ||| |||||||| Sbjct: 814 cggcggcggacaggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgc 755 Query: 418 cgatgtggagctcgttgccgag 439 ||||||| | |||||||||||| Sbjct: 754 cgatgtgcacctcgttgccgag 733
>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full insert sequence Length = 1251 Score = 143 bits (72), Expect = 6e-31 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 238 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 297 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 927 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 871 Query: 298 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgcagaggcacg 357 ||| ||| | ||||| | || || ||||||||||||||||||||||||||||||||| | Sbjct: 870 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcagaggcagg 811 Query: 358 ccgcggcggtgagcccggcgatgccctgcaccagggggcagcacttgacgctggcgtcgc 417 | ||||||| || ||||||||| ||| |||||| ||||||||| | ||| |||||||| Sbjct: 810 cggcggcggacaggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgc 751 Query: 418 cgatgtggagctcgttgccgag 439 ||||||| | |||||||||||| Sbjct: 750 cgatgtgcacctcgttgccgag 729
>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full insert sequence Length = 1272 Score = 143 bits (72), Expect = 6e-31 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 238 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 297 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 935 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 879 Query: 298 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgcagaggcacg 357 ||| ||| | ||||| | || || ||||||||||||||||||||||||||||||||| | Sbjct: 878 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcagaggcagg 819 Query: 358 ccgcggcggtgagcccggcgatgccctgcaccagggggcagcacttgacgctggcgtcgc 417 | ||||||| || ||||||||| ||| |||||| ||||||||| | ||| |||||||| Sbjct: 818 cggcggcggacaggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgc 759 Query: 418 cgatgtggagctcgttgccgag 439 ||||||| | |||||||||||| Sbjct: 758 cgatgtgcacctcgttgccgag 737
>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full insert sequence Length = 1257 Score = 143 bits (72), Expect = 6e-31 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 238 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 297 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 933 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 877 Query: 298 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgcagaggcacg 357 ||| ||| | ||||| | || || ||||||||||||||||||||||||||||||||| | Sbjct: 876 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcagaggcagg 817 Query: 358 ccgcggcggtgagcccggcgatgccctgcaccagggggcagcacttgacgctggcgtcgc 417 | ||||||| || ||||||||| ||| |||||| ||||||||| | ||| |||||||| Sbjct: 816 cggcggcggacaggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgc 757 Query: 418 cgatgtggagctcgttgccgag 439 ||||||| | |||||||||||| Sbjct: 756 cgatgtgcacctcgttgccgag 735
>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete sequence Length = 76546 Score = 143 bits (72), Expect = 6e-31 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 238 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 297 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 22373 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 22429 Query: 298 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgcagaggcacg 357 ||| ||| | ||||| | || || ||||||||||||||||||||||||||||||||| | Sbjct: 22430 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcagaggcagg 22489 Query: 358 ccgcggcggtgagcccggcgatgccctgcaccagggggcagcacttgacgctggcgtcgc 417 | ||||||| || ||||||||| ||| |||||| ||||||||| | ||| |||||||| Sbjct: 22490 cggcggcggacaggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgc 22549 Query: 418 cgatgtggagctcgttgccgag 439 ||||||| | |||||||||||| Sbjct: 22550 cgatgtgcacctcgttgccgag 22571
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05, complete sequence Length = 142556 Score = 143 bits (72), Expect = 6e-31 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 238 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 297 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 89424 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 89480 Query: 298 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgcagaggcacg 357 ||| ||| | ||||| | || || ||||||||||||||||||||||||||||||||| | Sbjct: 89481 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcagaggcagg 89540 Query: 358 ccgcggcggtgagcccggcgatgccctgcaccagggggcagcacttgacgctggcgtcgc 417 | ||||||| || ||||||||| ||| |||||| ||||||||| | ||| |||||||| Sbjct: 89541 cggcggcggacaggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgc 89600 Query: 418 cgatgtggagctcgttgccgag 439 ||||||| | |||||||||||| Sbjct: 89601 cgatgtgcacctcgttgccgag 89622
>gb|L37070.1|WHTHSP169L Triticum aestivum clone 17LC3 heat shock protein 16.9 (hsp16.9-17LC3) mRNA, partial cds Length = 440 Score = 69.9 bits (35), Expect = 7e-09 Identities = 64/74 (86%), Gaps = 6/74 (8%) Strand = Plus / Plus Query: 106 gtagcactaaatgaacaaaccggaagcgagtggcttcatcgac------acaaccttgat 159 |||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||| Sbjct: 294 gtagtactaaatgaacaaacaggaagcgactggcttcatcgaccgaacaacaaccttgat 353 Query: 160 ttcaaactcgtggc 173 |||||||| ||||| Sbjct: 354 ttcaaacttgtggc 367 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 221 ggacggacggacggatcaggcgcaggtgtatcccggcggcacgg 264 |||||||||| ||||||||||||||||||| ||||| ||||||| Sbjct: 390 ggacggacgggcggatcaggcgcaggtgtagcccgggggcacgg 433
>ref|NM_197679.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.8), mRNA Length = 402 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||||||||||||||||||| Sbjct: 315 gagcacgttggccttgatggcggtgcagaggca 283
>ref|XM_473863.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 465 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||| |||||||||||||||||||||||||||| Sbjct: 375 gagcgccttggccttgatggcggtgcagaggca 343
>ref|XM_473862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||| |||||||||||||||||||||||||||| Sbjct: 501 gagcgccttggccttgatggcggtgcagaggca 469
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||| |||||||||||||||||||||||||||| Sbjct: 78106 gagcgccttggccttgatggcggtgcagaggca 78074 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||| |||||||||||||||||||||||||||| Sbjct: 67687 gagcgccttggccttgatggcggtgcagaggca 67655
>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete sequence Length = 144798 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||||||||||||||||||| Sbjct: 34194 gagcacgttggccttgatggcggtgcagaggca 34162 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 324 agcaccttggccttgatggcggtgcagaggca 355 ||||| |||||||||||||||||||||||||| Sbjct: 27479 agcacgttggccttgatggcggtgcagaggca 27448 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 324 agcaccttggccttgatggcggtgcagaggcacgccgcggcggtgagcccggcgatgccc 383 ||||| |||||||||| ||||||||||||||| | |||||| ||| ||||||| ||| Sbjct: 57332 agcacattggccttgacggcggtgcagaggcagacggcggcgtcgaggtcggcgatcccc 57273 Query: 384 tgcaccagggggcagcact 402 |||| ||| | |||||||| Sbjct: 57272 tgcagcagcgagcagcact 57254 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 324 agcaccttggccttgatggcggtgcagaggcacgccgcggcggtgagcccggcgatgccc 383 ||||| |||||||||| ||||||||||||||| | |||||| ||| ||||||| ||| Sbjct: 54039 agcacgttggccttgacggcggtgcagaggcagacggcggcgtcgaggtcggcgatcccc 53980 Query: 384 tgcaccagggggcagcact 402 |||| ||| | |||||||| Sbjct: 53979 tgcagcagcgagcagcact 53961 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 62072 ttggccttgatggcggtgcagaggca 62047 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||| ||||||||||||||| Sbjct: 49925 gagcacgttggccttgacggcggtgcagaggca 49893 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||| ||||||||||||||| Sbjct: 30748 gagcacgttggccttgacggcggtgcagaggca 30716 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||| | ||||||||||||||| Sbjct: 66449 gagcacgttggccttcacggcggtgcagaggca 66417
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||||||||||||||||||| Sbjct: 21171512 gagcacgttggccttgatggcggtgcagaggca 21171544 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 324 agcaccttggccttgatggcggtgcagaggca 355 ||||| |||||||||||||||||||||||||| Sbjct: 21178227 agcacgttggccttgatggcggtgcagaggca 21178258 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 324 agcaccttggccttgatggcggtgcagaggcacgccgcggcggtgagcccggcgatgccc 383 ||||| |||||||||| ||||||||||||||| | |||||| ||| ||||||| ||| Sbjct: 21151667 agcacgttggccttgacggcggtgcagaggcagacggcggcgtcgaggtcggcgatcccc 21151726 Query: 384 tgcaccagggggcagcact 402 |||| ||| | |||||||| Sbjct: 21151727 tgcagcagcgagcagcact 21151745 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 324 agcaccttggccttgatggcggtgcagaggcacgccgcggcggtgagcccggcgatgccc 383 ||||| |||||||||| ||||||||||||||| | |||||| ||| ||||||| ||| Sbjct: 21148374 agcacattggccttgacggcggtgcagaggcagacggcggcgtcgaggtcggcgatcccc 21148433 Query: 384 tgcaccagggggcagcact 402 |||| ||| | |||||||| Sbjct: 21148434 tgcagcagcgagcagcact 21148452 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 21143634 ttggccttgatggcggtgcagaggca 21143659 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||| ||||||||||||||| Sbjct: 21174958 gagcacgttggccttgacggcggtgcagaggca 21174990 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||| ||||||||||||||| Sbjct: 21155781 gagcacgttggccttgacggcggtgcagaggca 21155813 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 324 agcaccttggccttgatggcggtgcagaggcacgccgc 361 ||||| |||||||||||||| ||||| |||||| |||| Sbjct: 21267449 agcacgttggccttgatggccgtgcacaggcacaccgc 21267412 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||| | ||||||||||||||| Sbjct: 21139257 gagcacgttggccttcacggcggtgcagaggca 21139289 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ccggcggcacggcgcagccg 272 |||||||||||||||||||| Sbjct: 1104096 ccggcggcacggcgcagccg 1104077
>dbj|AK062781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B03, full insert sequence Length = 713 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||| |||||||||||||||||||||||||||| Sbjct: 235 gagcgccttggccttgatggcggtgcagaggca 203
>dbj|AK062911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G07, full insert sequence Length = 757 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||||||||||||||||||| Sbjct: 402 gagcacgttggccttgatggcggtgcagaggca 370
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||||||||||||||||||| Sbjct: 21182776 gagcacgttggccttgatggcggtgcagaggca 21182808 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 324 agcaccttggccttgatggcggtgcagaggca 355 ||||| |||||||||||||||||||||||||| Sbjct: 21189491 agcacgttggccttgatggcggtgcagaggca 21189522 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 324 agcaccttggccttgatggcggtgcagaggcacgccgcggcggtgagcccggcgatgccc 383 ||||| |||||||||| ||||||||||||||| | |||||| ||| ||||||| ||| Sbjct: 21162931 agcacgttggccttgacggcggtgcagaggcagacggcggcgtcgaggtcggcgatcccc 21162990 Query: 384 tgcaccagggggcagcact 402 |||| ||| | |||||||| Sbjct: 21162991 tgcagcagcgagcagcact 21163009 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 324 agcaccttggccttgatggcggtgcagaggcacgccgcggcggtgagcccggcgatgccc 383 ||||| |||||||||| ||||||||||||||| | |||||| ||| ||||||| ||| Sbjct: 21159638 agcacattggccttgacggcggtgcagaggcagacggcggcgtcgaggtcggcgatcccc 21159697 Query: 384 tgcaccagggggcagcact 402 |||| ||| | |||||||| Sbjct: 21159698 tgcagcagcgagcagcact 21159716 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 21154898 ttggccttgatggcggtgcagaggca 21154923 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||| ||||||||||||||| Sbjct: 21186222 gagcacgttggccttgacggcggtgcagaggca 21186254 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||| ||||||||||||||| Sbjct: 21167045 gagcacgttggccttgacggcggtgcagaggca 21167077 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 324 agcaccttggccttgatggcggtgcagaggcacgccgc 361 ||||| |||||||||||||| ||||| |||||| |||| Sbjct: 21278713 agcacgttggccttgatggccgtgcacaggcacaccgc 21278676 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||| | ||||||||||||||| Sbjct: 21150521 gagcacgttggccttcacggcggtgcagaggca 21150553 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ccggcggcacggcgcagccg 272 |||||||||||||||||||| Sbjct: 1104093 ccggcggcacggcgcagccg 1104074
>ref|NM_197681.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.6), mRNA Length = 399 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 324 agcaccttggccttgatggcggtgcagaggca 355 ||||| |||||||||||||||||||||||||| Sbjct: 308 agcacgttggccttgatggcggtgcagaggca 277
>dbj|AK062381.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B09, full insert sequence Length = 702 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 324 agcaccttggccttgatggcggtgcagaggca 355 ||||| |||||||||||||||||||||||||| Sbjct: 377 agcacgttggccttgatggcggtgcagaggca 346
>dbj|AK062295.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F05, full insert sequence Length = 570 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 328 ccttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||||| Sbjct: 146 ccttggccttgatggcggtgcagaggca 119
>ref|NM_197675.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.12), mRNA Length = 396 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 324 agcaccttggccttgatggcggtgcagaggcacgccgcggcggtgagcccggcgatgccc 383 ||||| |||||||||| ||||||||||||||| | |||||| ||| ||||||| ||| Sbjct: 311 agcacgttggccttgacggcggtgcagaggcagacggcggcgtcgaggtcggcgatcccc 252 Query: 384 tgcaccagggggcagcact 402 |||| ||| | |||||||| Sbjct: 251 tgcagcagcgagcagcact 233
>ref|NM_197674.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.13), mRNA Length = 396 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 324 agcaccttggccttgatggcggtgcagaggcacgccgcggcggtgagcccggcgatgccc 383 ||||| |||||||||| ||||||||||||||| | |||||| ||| ||||||| ||| Sbjct: 311 agcacattggccttgacggcggtgcagaggcagacggcggcgtcgaggtcggcgatcccc 252 Query: 384 tgcaccagggggcagcact 402 |||| ||| | |||||||| Sbjct: 251 tgcagcagcgagcagcact 233
>emb|Z12103.1|ZMDELINM Z.mays mRNA that delineates a novel subset of cortical cells Length = 594 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggcac 356 ||||||||||||||||||||||||||| Sbjct: 313 ttggccttgatggcggtgcagaggcac 287
>gb|AY104687.1| Zea mays PCO121733 mRNA sequence Length = 680 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggcac 356 ||||||||||||||||||||||||||| Sbjct: 375 ttggccttgatggcggtgcagaggcac 349
>gb|AY105236.1| Zea mays PCO121732 mRNA sequence Length = 763 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggcac 356 ||||||||||||||||||||||||||| Sbjct: 381 ttggccttgatggcggtgcagaggcac 355
>gb|AF001634.1|AF001634 Zea mays physical impedance induced protein (IIG1) mRNA, complete cds Length = 677 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggcac 356 ||||||||||||||||||||||||||| Sbjct: 388 ttggccttgatggcggtgcagaggcac 362
>ref|XM_467171.1| Oryza sativa (japonica cultivar-group), mRNA Length = 757 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagag 352 |||||| ||||||||||||||||||||||| Sbjct: 383 gagcacgttggccttgatggcggtgcagag 354
>ref|NM_197672.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.15), mRNA Length = 429 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 335 ttggccttgatggcggtgcagaggca 310
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 189850 ttggccttgatggcggtgcagaggca 189825 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 187146 ttggccttgatggcggtgcagaggca 187121 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 337 tgatggcggtgcagaggcacgccgcggcg 365 ||||||||| ||||||||||||||||||| Sbjct: 28817159 tgatggcggcgcagaggcacgccgcggcg 28817131
>gb|AY466108.1| Oryza sativa (japonica cultivar-group) lipid transfer protein-like protein (LTP1) mRNA, complete cds Length = 772 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 440 ttggccttgatggcggtgcagaggca 415
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0080O10, from chromosome 3, complete sequence Length = 127917 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 26917 ttggccttgatggcggtgcagaggca 26892 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 24213 ttggccttgatggcggtgcagaggca 24188
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0079B22, from chromosome 3, complete sequence Length = 156933 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 123850 ttggccttgatggcggtgcagaggca 123825 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 121146 ttggccttgatggcggtgcagaggca 121121
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 189850 ttggccttgatggcggtgcagaggca 189825 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 187146 ttggccttgatggcggtgcagaggca 187121 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 337 tgatggcggtgcagaggcacgccgcggcg 365 ||||||||| ||||||||||||||||||| Sbjct: 28908483 tgatggcggcgcagaggcacgccgcggcg 28908455
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagag 352 |||||| ||||||||||||||||||||||| Sbjct: 26833512 gagcacgttggccttgatggcggtgcagag 26833483 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 aacggacggacggacggatc 237 |||||||||||||||||||| Sbjct: 33695616 aacggacggacggacggatc 33695597
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence Length = 162241 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 75508 ttggccttgatggcggtgcagaggca 75533 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 72804 ttggccttgatggcggtgcagaggca 72829
>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1001_D02 Length = 129081 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagag 352 |||||| ||||||||||||||||||||||| Sbjct: 12055 gagcacgttggccttgatggcggtgcagag 12026
>dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516F12 Length = 146364 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagag 352 |||||| ||||||||||||||||||||||| Sbjct: 99565 gagcacgttggccttgatggcggtgcagag 99536
>dbj|AK103618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133L09, full insert sequence Length = 780 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 461 ttggccttgatggcggtgcagaggca 436
>dbj|AK102086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082M21, full insert sequence Length = 769 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 414 ttggccttgatggcggtgcagaggca 389
>dbj|AK062654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E10, full insert sequence Length = 736 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||||||||||||||| Sbjct: 422 ttggccttgatggcggtgcagaggca 397
>dbj|AK058218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F04, full insert sequence Length = 757 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagag 352 |||||| ||||||||||||||||||||||| Sbjct: 383 gagcacgttggccttgatggcggtgcagag 354
>ref|NM_197680.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.7), mRNA Length = 375 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||| ||||||||||||||| Sbjct: 285 gagcacgttggccttgacggcggtgcagaggca 253
>ref|NM_197676.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.11), mRNA Length = 411 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||| ||||||||||||||| Sbjct: 327 gagcacgttggccttgacggcggtgcagaggca 295
>ref|XM_469576.1| Oryza sativa (japonica cultivar-group), mRNA Length = 445 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 337 tgatggcggtgcagaggcacgccgcggcg 365 ||||||||| ||||||||||||||||||| Sbjct: 341 tgatggcggcgcagaggcacgccgcggcg 313
>ref|XM_473450.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 414 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||||||| ||||||||||| Sbjct: 327 gagcacgttggccttgatggccgtgcagaggca 295
>gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic sequence, complete sequence Length = 184366 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 337 tgatggcggtgcagaggcacgccgcggcg 365 ||||||||| ||||||||||||||||||| Sbjct: 454 tgatggcggcgcagaggcacgccgcggcg 426
>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence Length = 173522 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||||||| ||||||||||| Sbjct: 157688 gagcacgttggccttgatggccgtgcagaggca 157656 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 334 ccttgatggcggtgcagaggcacgccgc 361 |||||||||| |||||||||||| |||| Sbjct: 147545 ccttgatggccgtgcagaggcacaccgc 147518
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence Length = 147344 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 337 tgatggcggtgcagaggcacgccgcggcg 365 ||||||||| ||||||||||||||||||| Sbjct: 124140 tgatggcggcgcagaggcacgccgcggcg 124112
>dbj|AK063090.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-A12, full insert sequence Length = 627 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||| ||||||||||||||| Sbjct: 370 gagcacgttggccttgacggcggtgcagaggca 338
>dbj|AB018588.1| Zea mays ZmGR1b mRNA, complete cds Length = 813 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||||||| ||||||||||| Sbjct: 358 gagcacgttggccttgatggccgtgcagaggca 326
>dbj|AB018587.1| Zea mays ZmGR1a mRNA, complete cds Length = 833 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||||||| ||||||||||| Sbjct: 361 gagcacgttggccttgatggccgtgcagaggca 329
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Minus Query: 356 cgccgcggcggtgagcccggcgatgcc 382 |||||||||||||||||| |||||||| Sbjct: 212797 cgccgcggcggtgagcccagcgatgcc 212771
>gb|AY105972.1| Zea mays PCO122221 mRNA sequence Length = 768 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 334 ccttgatggcggtgcagaggcac 356 ||||||||||||||||||||||| Sbjct: 376 ccttgatggcggtgcagaggcac 354
>gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210923 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 219 acggacggacggacggatcagg 240 |||||||||||||||||||||| Sbjct: 171016 acggacggacggacggatcagg 170995
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 324 agcaccttggccttgatggcggtgcagaggcacgccgc 361 ||||| |||||||||||||| ||||| |||||| |||| Sbjct: 66910 agcacgttggccttgatggccgtgcacaggcacaccgc 66947
>gb|AY108363.1| Zea mays PCO069442 mRNA sequence Length = 837 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||| ||||||||||||||| Sbjct: 375 ttggccttgacggcggtgcagaggca 350
>gb|AY105149.1| Zea mays PCO087109 mRNA sequence Length = 966 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 330 ttggccttgatggcggtgcagaggca 355 |||||||||||||| ||||||||||| Sbjct: 484 ttggccttgatggccgtgcagaggca 459
>gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 229681 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 219 acggacggacggacggatcagg 240 |||||||||||||||||||||| Sbjct: 70676 acggacggacggacggatcagg 70655
>ref|NM_197671.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.16), mRNA Length = 441 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||| | ||||||||||||||| Sbjct: 357 gagcacgttggccttcacggcggtgcagaggca 325
>emb|X57568.1|SGAMYLASE S.griseus DNA for alpha amylase gene, amy Length = 2271 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 accttggccttgatggcggtg 347 ||||||||||||||||||||| Sbjct: 982 accttggccttgatggcggtg 962
>gb|DQ393975.1| Cydia pomonella clone Cp4.161 microsatellite sequence Length = 422 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 219 acggacggacggacggatcag 239 ||||||||||||||||||||| Sbjct: 113 acggacggacggacggatcag 93
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Minus Query: 288 agctggagggcgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtg 347 |||||||| |||||||||| ||||| | || |||||| | |||| | |||||| |||| Sbjct: 25844262 agctggagcgcgaggggcaggtagatgttgatgttgaggagcttgagcctgatggtggtg 25844203 Query: 348 cagaggcac 356 ||||||||| Sbjct: 25844202 cagaggcac 25844194 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 gccctgcaccagggggcagcactt 403 |||||||||||| ||||||||||| Sbjct: 3455186 gccctgcaccagcgggcagcactt 3455209
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Minus Query: 288 agctggagggcgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtg 347 |||||||| |||||||||| ||||| | || |||||| | |||| | |||||| |||| Sbjct: 126466 agctggagcgcgaggggcaggtagatgttgatgttgaggagcttgagcctgatggtggtg 126407 Query: 348 cagaggcac 356 ||||||||| Sbjct: 126406 cagaggcac 126398
>dbj|AK103715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033137N14, full insert sequence Length = 1338 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Minus Query: 288 agctggagggcgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtg 347 |||||||| |||||||||| ||||| | || |||||| | |||| | |||||| |||| Sbjct: 807 agctggagcgcgaggggcaggtagatgttgatgttgaggagcttgagcctgatggtggtg 748 Query: 348 cagaggcac 356 ||||||||| Sbjct: 747 cagaggcac 739
>gb|AY108411.1| Zea mays PCO134698 mRNA sequence Length = 667 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||||| |||||||||||||| Sbjct: 425 gagcacgttggccttgagcgcggtgcagaggca 393
>gb|M18244.1|STMAMYSL Streptomyces limosus alpha-amylase gene, complete cds Length = 2291 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 accttggccttgatggcggtg 347 ||||||||||||||||||||| Sbjct: 975 accttggccttgatggcggtg 955
>gb|L27210.1|RICRCG2 Oryza sativa root-specific protein (RCg2) gene, complete cds Length = 2252 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||| | ||||||||||||||| Sbjct: 2013 gagcacgttggccttcacggcggtgcagaggca 1981
>gb|L27209.1|RICRCC2 Oryza sativa root-specific RCc2 mRNA, complete cds Length = 654 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 323 gagcaccttggccttgatggcggtgcagaggca 355 |||||| |||||||| | ||||||||||||||| Sbjct: 401 gagcacgttggccttcacggcggtgcagaggca 369
>ref|XM_550375.1| Oryza sativa (japonica cultivar-group), mRNA Length = 992 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 gccctgcaccagggggcagcactt 403 |||||||||||| ||||||||||| Sbjct: 619 gccctgcaccagcgggcagcactt 596
>ref|XM_636462.1| Dictyostelium discoideum aldehyde dehydrogenase (DDB0231482), partial mRNA Length = 1770 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 acaaatcttacaagatttca 61 |||||||||||||||||||| Sbjct: 339 acaaatcttacaagatttca 358
>ref|NM_194617.1| Oryza sativa (japonica cultivar-group) putative G-protein (OSJNBa0023I19.15), mRNA Length = 1752 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ccggcggcacggcgcagccg 272 |||||||||||||||||||| Sbjct: 256 ccggcggcacggcgcagccg 237
>ref|XM_473581.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1416 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gacgagcagctggagggcga 300 |||||||||||||||||||| Sbjct: 93 gacgagcagctggagggcga 74
>ref|XM_473449.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 396 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 334 ccttgatggcggtgcagaggcacgccgc 361 |||||||||| |||||||||||| |||| Sbjct: 298 ccttgatggccgtgcagaggcacaccgc 271
>gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, complete sequence Length = 242222 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 gcaccagggggcagcacttg 404 |||||||||||||||||||| Sbjct: 64383 gcaccagggggcagcacttg 64402
>emb|X60432.1|ZMPRP Z.mays PRP gene Length = 1402 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 ccctgcaccagggggcagcacttg 404 ||||||||||| |||||||||||| Sbjct: 872 ccctgcaccagcgggcagcacttg 849
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ccggcggcacggcgcagccg 272 |||||||||||||||||||| Sbjct: 1104096 ccggcggcacggcgcagccg 1104077
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145 biosynthetic gene cluster, complete sequence Length = 126933 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 accagggggcagcacttgacgctg 410 ||||||| |||||||||||||||| Sbjct: 126719 accagggtgcagcacttgacgctg 126696
>emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in linkage group 2, complete sequence Length = 175342 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ggaacggacggacggacgga 235 |||||||||||||||||||| Sbjct: 123816 ggaacggacggacggacgga 123797
>emb|AL929566.30| Zebrafish DNA sequence from clone CH211-159C13 in linkage group 8, complete sequence Length = 137166 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gaacggacggacggacggat 236 |||||||||||||||||||| Sbjct: 63584 gaacggacggacggacggat 63603
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 gcggtgagcccggcgatgcc 382 |||||||||||||||||||| Sbjct: 1404259 gcggtgagcccggcgatgcc 1404278
>gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, complete sequence Length = 157450 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ccggcggcacggcgcagccg 272 |||||||||||||||||||| Sbjct: 101549 ccggcggcacggcgcagccg 101530
>emb|BX548249.13| Zebrafish DNA sequence from clone CH211-93A2 in linkage group 21, complete sequence Length = 153142 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ggaacggacggacggacgga 235 |||||||||||||||||||| Sbjct: 66734 ggaacggacggacggacgga 66715
>gb|AC154028.7| Mus musculus 10 BAC RP23-246J13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206191 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 19 caccttccatagccactggatatacaaa 46 |||||||||||||||||| |||||||| Sbjct: 41677 caccttccatagccactgtgtatacaaa 41650
>gb|AC158598.7| Mus musculus 10 BAC RP24-286B23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162273 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 19 caccttccatagccactggatatacaaa 46 |||||||||||||||||| |||||||| Sbjct: 153678 caccttccatagccactgtgtatacaaa 153651
>gb|AC141000.7| Homo sapiens 3 BAC RP11-480C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175946 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 gcaccagggggcagcacttg 404 |||||||||||||||||||| Sbjct: 88672 gcaccagggggcagcacttg 88653
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 gctggagggcgaggggcacg 308 |||||||||||||||||||| Sbjct: 781004 gctggagggcgaggggcacg 780985
>emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 in linkage group 20, complete sequence Length = 174999 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ggaacggacggacggacgga 235 |||||||||||||||||||| Sbjct: 123472 ggaacggacggacggacgga 123453
>dbj|AP002864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0033B09 Length = 143545 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 gccctgcaccagggggcagcactt 403 |||||||||||| ||||||||||| Sbjct: 71890 gccctgcaccagcgggcagcactt 71913
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone P0680A03 Length = 156054 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 gccctgcaccagggggcagcactt 403 |||||||||||| ||||||||||| Sbjct: 146740 gccctgcaccagcgggcagcactt 146763
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 gcggtgagcccggcgatgcc 382 |||||||||||||||||||| Sbjct: 2753403 gcggtgagcccggcgatgcc 2753384 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 cgcggcggtgagcccggcga 378 |||||||||||||||||||| Sbjct: 2637014 cgcggcggtgagcccggcga 2637033
>emb|BX842600.1| Neurospora crassa DNA linkage group II BAC clone B15P20 Length = 74452 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gaacggacggacggacggat 236 |||||||||||||||||||| Sbjct: 73734 gaacggacggacggacggat 73753
>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1249_F12 Length = 133205 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 aacggacggacggacggatc 237 |||||||||||||||||||| Sbjct: 64023 aacggacggacggacggatc 64004
>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0700F06 Length = 139277 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 aacggacggacggacggatc 237 |||||||||||||||||||| Sbjct: 26483 aacggacggacggacggatc 26464
>emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, complete sequence Length = 148678 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 ggaacggacggacggacgga 235 |||||||||||||||||||| Sbjct: 124799 ggaacggacggacggacgga 124818
>dbj|AK121041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052A13, full insert sequence Length = 1774 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gacgagcagctggagggcga 300 |||||||||||||||||||| Sbjct: 353 gacgagcagctggagggcga 334
>dbj|AK103637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033134F12, full insert sequence Length = 1013 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 gccctgcaccagggggcagcactt 403 |||||||||||| ||||||||||| Sbjct: 619 gccctgcaccagcgggcagcactt 596
>dbj|AK101305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033M04, full insert sequence Length = 992 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 gccctgcaccagggggcagcactt 403 |||||||||||| ||||||||||| Sbjct: 619 gccctgcaccagcgggcagcactt 596
>dbj|AK069178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008D04, full insert sequence Length = 2067 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gacgagcagctggagggcga 300 |||||||||||||||||||| Sbjct: 565 gacgagcagctggagggcga 546
>dbj|AK061150.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-E04, full insert sequence Length = 1634 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gacgagcagctggagggcga 300 |||||||||||||||||||| Sbjct: 139 gacgagcagctggagggcga 120
>gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, complete sequence Length = 172337 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 gcaccagggggcagcacttg 404 |||||||||||||||||||| Sbjct: 108287 gcaccagggggcagcacttg 108306
>dbj|AK059170.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E12, full insert sequence Length = 1384 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 gccctgcaccagggggcagcactt 403 |||||||||||| ||||||||||| Sbjct: 1036 gccctgcaccagcgggcagcactt 1013
>gb|AY105001.1| Zea mays PCO123892 mRNA sequence Length = 1144 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 ccctgcaccagggggcagcacttg 404 ||||||||||| |||||||||||| Sbjct: 533 ccctgcaccagcgggcagcacttg 510
>emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0323C08, complete sequence Length = 94903 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 gaggcacgccgcggcggtga 369 |||||||||||||||||||| Sbjct: 88948 gaggcacgccgcggcggtga 88929
>emb|AL732336.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0105C05, complete sequence Length = 62215 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 gaggcacgccgcggcggtga 369 |||||||||||||||||||| Sbjct: 709 gaggcacgccgcggcggtga 690
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 cgttgacgagcagctggagggcga 300 ||||||||||| |||||||||||| Sbjct: 5613674 cgttgacgagcggctggagggcga 5613697
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gacgagcagctggagggcga 300 |||||||||||||||||||| Sbjct: 86586 gacgagcagctggagggcga 86567
>gb|U73214.1|TAU73214 Triticum aestivum cold acclimation protein WCOR518 (Wcor518) mRNA, parial cds Length = 1168 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 320 gttgagcaccttggccttgatggcggtgcagaggca 355 ||||||| ||||| |||||||| |||||||||||| Sbjct: 862 gttgagcgccttgagcttgatggtggtgcagaggca 827 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,079,232 Number of Sequences: 3902068 Number of extensions: 3079232 Number of successful extensions: 76952 Number of sequences better than 10.0: 110 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 75777 Number of HSP's gapped (non-prelim): 1172 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
