>CYSP1_MAIZE (Q10716) Cysteine proteinase 1 precursor (EC 3.4.22.-)|
          Length = 371

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = -3

Query: 252 KICRGPHVKNKCGVDSMVSPVTAIHTFKK 166
           KICRG +V+NKCGVDSMVS V+A+H  K+
Sbjct: 343 KICRGSNVRNKCGVDSMVSTVSAVHASKE 371

>PAPA5_CARPA (P05993) Cysteine proteinase (EC 3.4.22.-) (Clone PLBPC13)|
           (Fragment)
          Length = 96

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = -3

Query: 252 KICRGPHVKNKCGVDSMVSPVTAIHT 175
           KICRG   +N CGVDSMVS V A+HT
Sbjct: 71  KICRG---RNICGVDSMVSTVAAVHT 93

>YQGD_ECOLI (P46879) Hypothetical protein yqgD|
          Length = 83

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 113 TTSLSMDNPNSCTTRSYSFLKVWMAVTGETMESTPHLFLTC 235
           TT+L + N  S +   Y ++ +WMA+ G+     P  F +C
Sbjct: 6   TTTLQVKNTGSLSVNRYGWINIWMAILGQFFTLFPLFFESC 46

>CYSP_PEA (P25804) Cysteine proteinase 15A precursor (EC 3.4.22.-)|
           (Turgor-responsive protein 15A)
          Length = 363

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = -3

Query: 252 KICRGPHVKNKCGVDSMVSPVTA 184
           KICRG   +N CGVDSMVS V A
Sbjct: 339 KICRG---RNVCGVDSMVSTVAA 358

>RD19A_ARATH (P43296) Cysteine proteinase RD19a precursor (EC 3.4.22.-) (RD19)|
          Length = 368

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = -3

Query: 252 KICRGPHVKNKCGVDSMVSPVTA 184
           KIC+G   +N CGVDSMVS V A
Sbjct: 342 KICKG---RNICGVDSMVSTVAA 361

>A494_ARATH (P43295) Probable cysteine proteinase A494 precursor (EC 3.4.22.-)|
          Length = 361

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -3

Query: 252 KICRGPHVKNKCGVDSMVSPVTA 184
           KIC+G   +N CGVDS+VS V A
Sbjct: 339 KICKG---RNICGVDSLVSTVAA 358

>Y390_MYCGE (Q49430) Hypothetical ABC transporter ATP-binding MG390|
          Length = 660

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +2

Query: 26  NQKKFNILLVTNCKAILE*ASRNIPSPGTTTSLSMDNPNSCTTRSYSFLKVWMAVTG 196
           N+K+FN L++   KA+L+  ++NI +      L+++N  S   + + F  + + V G
Sbjct: 342 NKKRFNFLMLNFRKALLQ--NQNINNQKEINRLTIENIKSFFQQGFDFAILGLGVIG 396

>MSU1_YEAST (P39112) Exoribonuclease II, mitochondrial precursor (EC 3.1.13.1)|
           (Ribonuclease II) (RNase II) (Mitochondrial biogenesis
           MSU1 protein)
          Length = 969

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 58  KLQSNTGISITEYTQSWHNHKLIYGQSKLMYYEILFLLKGMDGGNRGNHGIDTALV 225
           KL++N+   + ++ +  +  K  Y     +Y  ++ LLK    GN  N+GI  AL+
Sbjct: 392 KLEANSYREVNKFVKLVNERK--YRDISALYPSVIQLLKDFAAGNFHNNGIIVALI 445

>YBP3_YEAST (P38227) Hypothetical transport protein YBR043C|
          Length = 689

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +3

Query: 18  LTAIKKSLTYYWLQIAKQYW-----NKHHGIYPVLAQPQAYLWTIQTHVLRDPIPS*RYG 182
           L  I  S+TY++  I    W      ++   Y +LA      W + T V+  PI    +G
Sbjct: 515 LLYIPNSVTYFFASIYGGRWVDMLLKRYKEKYGILAPEARISWNVVTSVISFPIALLIFG 574

Query: 183 W 185
           W
Sbjct: 575 W 575

>ITA5_XENLA (Q06274) Integrin alpha-5 precursor (Fibronectin receptor alpha|
           subunit) (Integrin alpha-F) (VLA-5) [Contains: Integrin
           alpha-5 heavy chain; Integrin alpha-5 light chain]
          Length = 1050

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 173 KVWMAVTGETMESTPHLFLT 232
           +V++ + G+ MESTPHL LT
Sbjct: 354 RVYVYLQGDHMESTPHLILT 373

>L_SV5WR (Q03396) Large structural protein (Protein L) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2255

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 27  IKKSLTYYWLQIAKQYWNKHHGIYPVLAQP 116
           I K+L ++   +   Y  KHHG++P L  P
Sbjct: 395 IMKTLAFFHTILINGYRRKHHGVWPPLNLP 424

>L_SV5 (Q88434) Large structural protein (Protein L) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2255

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 27  IKKSLTYYWLQIAKQYWNKHHGIYPVLAQP 116
           I K+L ++   +   Y  KHHG++P L  P
Sbjct: 395 IMKTLAFFHTILINGYRRKHHGVWPPLNLP 424


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,476,206
Number of Sequences: 219361
Number of extensions: 797042
Number of successful extensions: 2219
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2219
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)