>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence
          Length = 203581

 Score =  212 bits (107), Expect = 7e-52
 Identities = 242/287 (84%)
 Strand = Plus / Minus

                                                                        
Query: 153  tcgtaggggaaggaggtggcggcgagccagtcgtcgccgtaaatgaacttgtcgacggcg 212
            ||||||||||||||||||||| ||||||| ||||||||||| ||||| || |||||||||
Sbjct: 1205 tcgtaggggaaggaggtggcgccgagccactcgtcgccgtagatgaagttctcgacggcg 1146

                                                                        
Query: 213  aacagggcggcctcgtcgtagcccatctcgtggaacccggcccagcccacgcgcccgtcc 272
            ||| |||| |||||||||||  ||||||   | | ||| |||||||||||||| || |||
Sbjct: 1145 aactgggccgcctcgtcgtactccatctgccgcaccccagcccagcccacgcggccatcc 1086

                                                                        
Query: 273  gtgccggcgccgggcccctcgttcccgtactccccgaagtagaccgtgtctgcgcggccc 332
            ||| |||| || ||||| |||||||||||||| |||||||| || ||||| |||||||| 
Sbjct: 1085 gtgtcggcccccggcccgtcgttcccgtactcgccgaagtacacggtgtccgcgcggccg 1026

                                                                        
Query: 333  ggctccgcgccgggccagcccgtccacccgtcgcggtccacgagcgggcccaggtaggac 392
            ||||| |||||||||||  | | ||| || || |||||||||| | |||||||| |||| 
Sbjct: 1025 ggctcggcgccgggccactcggcccatccctcccggtccacgatctggcccaggaaggag 966

                                                           
Query: 393  ccgatgaccacggcccgcgcgtacgcgccccacggccggccgaggaa 439
             | || || ||||| ||||||||||| |||||||||||||| |||||
Sbjct: 965  tccatcacgacggcgcgcgcgtacgcaccccacggccggcccaggaa 919

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  196 bits (99), Expect = 4e-47
 Identities = 243/291 (83%)
 Strand = Plus / Minus

                                                                           
Query: 152     gtcgtaggggaaggaggtggcggcgagccagtcgtcgccgtaaatgaacttgtcgacggc 211
               |||||||||||||||||||||||||||||| | ||||||| | ||||  |||||||||| 
Sbjct: 4713751 gtcgtaggggaaggaggtggcggcgagccactggtcgccggagatgaggttgtcgacgga 4713692

                                                                           
Query: 212     gaacagggcggcctcgtcgtagcccatctcgtggaacccggcccagcccacgcgcccgtc 271
               |||| |||| ||||||||||||||||| || |||||||||||||| || ||||| |||||
Sbjct: 4713691 gaactgggccgcctcgtcgtagcccatatcatggaacccggcccatccgacgcggccgtc 4713632

                                                                           
Query: 272     cgtgccggcgccgggcccctcgttcccgtactccccgaagtagaccgtgtctgcgcggcc 331
               | || ||||||| |||||  | ||||| ||||| |||||||| ||||| || ||||||||
Sbjct: 4713631 catggcggcgcccggcccgccattcccatactcaccgaagtacaccgtctcggcgcggcc 4713572

                                                                           
Query: 332     cggctccgcgccgggccagcccgtccacccgtcgcggtccacgagcgggcccaggtagga 391
                ||||| |||||||||||  |   ||| ||| | ||||| ||||||||||| ||||||||
Sbjct: 4713571 gggctcggcgccgggccactcgacccagccggcccggtcgacgagcgggccgaggtagga 4713512

                                                                  
Query: 392     cccgatgaccacggcccgcgcgtacgcgccccacggccggccgaggaaggt 442
                 | ||||| ||||| || ||||| |  | |||||||||||| ||||||||
Sbjct: 4713511 gtccatgacgacggcgcgggcgtagggccgccacggccggcccaggaaggt 4713461

>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0698A06
          Length = 156514

 Score =  196 bits (99), Expect = 4e-47
 Identities = 243/291 (83%)
 Strand = Plus / Minus

                                                                         
Query: 152   gtcgtaggggaaggaggtggcggcgagccagtcgtcgccgtaaatgaacttgtcgacggc 211
             |||||||||||||||||||||||||||||| | ||||||| | ||||  |||||||||| 
Sbjct: 76350 gtcgtaggggaaggaggtggcggcgagccactggtcgccggagatgaggttgtcgacgga 76291

                                                                         
Query: 212   gaacagggcggcctcgtcgtagcccatctcgtggaacccggcccagcccacgcgcccgtc 271
             |||| |||| ||||||||||||||||| || |||||||||||||| || ||||| |||||
Sbjct: 76290 gaactgggccgcctcgtcgtagcccatatcatggaacccggcccatccgacgcggccgtc 76231

                                                                         
Query: 272   cgtgccggcgccgggcccctcgttcccgtactccccgaagtagaccgtgtctgcgcggcc 331
             | || ||||||| |||||  | ||||| ||||| |||||||| ||||| || ||||||||
Sbjct: 76230 catggcggcgcccggcccgccattcccatactcaccgaagtacaccgtctcggcgcggcc 76171

                                                                         
Query: 332   cggctccgcgccgggccagcccgtccacccgtcgcggtccacgagcgggcccaggtagga 391
              ||||| |||||||||||  |   ||| ||| | ||||| ||||||||||| ||||||||
Sbjct: 76170 gggctcggcgccgggccactcgacccagccggcccggtcgacgagcgggccgaggtagga 76111

                                                                
Query: 392   cccgatgaccacggcccgcgcgtacgcgccccacggccggccgaggaaggt 442
               | ||||| ||||| || ||||| |  | |||||||||||| ||||||||
Sbjct: 76110 gtccatgacgacggcgcgggcgtagggccgccacggccggcccaggaaggt 76060

>gb|AE005762.1| Caulobacter crescentus CB15 section 88 of 359 of the complete genome
          Length = 5616

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 203  gtcgacggcgaacagggcggcctcgtcg 230
            |||| |||||||||||||||||||||||
Sbjct: 1533 gtcgccggcgaacagggcggcctcgtcg 1560

>gb|AY955804.1| Eurypetalum tessmannii 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 815

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 256 agcccacgcgcccgtccgtgccggcgccggg 286
           ||||| |||||||||||||||||||| ||||
Sbjct: 211 agcccgcgcgcccgtccgtgccggcgtcggg 181

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 360     ccgtcgcggtccacgagcgggcc 382
               |||||||||||||||||||||||
Sbjct: 1802707 ccgtcgcggtccacgagcgggcc 1802729

>gb|AY107840.1| Zea mays PCO070891 mRNA sequence
          Length = 977

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 272 cgtgccggcgccgggcccctcgttcccgtactccccgaagtagaccgtgtc 322
           |||||||||||||||||||  ||||  |||||| ||| |||||| ||||||
Sbjct: 912 cgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtc 862

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 208     cggcgaacagggcggcctcgt 228
               |||||||||||||||||||||
Sbjct: 1983864 cggcgaacagggcggcctcgt 1983884

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 241     cgtggaacccggcccagccca 261
               |||||||||||||||||||||
Sbjct: 1602796 cgtggaacccggcccagccca 1602816



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 264     cgcccgtccgtgccggcgccgggc 287
               |||||||||| |||||||||||||
Sbjct: 3899104 cgcccgtccgggccggcgccgggc 3899081

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 164     ggaggtggcggcgagccagtcgtcg 188
               ||||||||||||||||||| |||||
Sbjct: 1238590 ggaggtggcggcgagccagccgtcg 1238566

>gb|AY523975.1|AY523972S4 Azospirillum brasilense plasmid 90 MDa, partial sequence
          Length = 6171

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 214  acagggcggcctcgtcgtag 233
            ||||||||||||||||||||
Sbjct: 3128 acagggcggcctcgtcgtag 3109

>ref|XM_983570.1| PREDICTED: Mus musculus RIKEN cDNA 1810013L24 gene, transcript
           variant 2 (1810013L24Rik), mRNA
          Length = 10268

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 280 cgccgggcccctcgttcccg 299
           ||||||||||||||||||||
Sbjct: 221 cgccgggcccctcgttcccg 240

>ref|XM_983535.1| PREDICTED: Mus musculus RIKEN cDNA 1810013L24 gene, transcript
           variant 1 (1810013L24Rik), mRNA
          Length = 4079

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 280 cgccgggcccctcgttcccg 299
           ||||||||||||||||||||
Sbjct: 262 cgccgggcccctcgttcccg 281

>ref|XM_978218.1| PREDICTED: Mus musculus RIKEN cDNA 1810013L24 gene, transcript
           variant 2 (1810013L24Rik), mRNA
          Length = 10267

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 280 cgccgggcccctcgttcccg 299
           ||||||||||||||||||||
Sbjct: 221 cgccgggcccctcgttcccg 240

>ref|XM_978179.1| PREDICTED: Mus musculus RIKEN cDNA 1810013L24 gene, transcript
           variant 1 (1810013L24Rik), mRNA
          Length = 4079

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 280 cgccgggcccctcgttcccg 299
           ||||||||||||||||||||
Sbjct: 262 cgccgggcccctcgttcccg 281

>ref|XM_862438.1| PREDICTED: Canis familiaris similar to TAF6-like RNA polymerase II
            p300/CBP-associated factor-associated factor 65 kDa
            subunit 6L (PCAF-associated factor 65 alpha)
            (PAF65-alpha), transcript variant 2 (LOC476051), mRNA
          Length = 1948

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 272  cgtgccggcgccgggcccct 291
            ||||||||||||||||||||
Sbjct: 1708 cgtgccggcgccgggcccct 1689

>ref|XM_533259.2| PREDICTED: Canis familiaris similar to TAF6-like RNA polymerase II
            p300/CBP-associated factor-associated factor 65 kDa
            subunit 6L (PCAF-associated factor 65 alpha)
            (PAF65-alpha), transcript variant 1 (LOC476051), mRNA
          Length = 2023

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 272  cgtgccggcgccgggcccct 291
            ||||||||||||||||||||
Sbjct: 1783 cgtgccggcgccgggcccct 1764

>ref|XM_805834.1| Trypanosoma cruzi strain CL Brener cytochrome c oxidase copper
           chaperone (Tc00.1047053506691.64) partial mRNA
          Length = 225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 ggggaaggaggtggcggcga 177
           ||||||||||||||||||||
Sbjct: 9   ggggaaggaggtggcggcga 28

>ref|XM_817023.1| Trypanosoma cruzi strain CL Brener cytochrome c oxidase copper
           chaperone (Tc00.1047053508153.994) partial mRNA
          Length = 225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 ggggaaggaggtggcggcga 177
           ||||||||||||||||||||
Sbjct: 9   ggggaaggaggtggcggcga 28

>emb|AL391646.12| Human DNA sequence from clone RP11-697G4 on chromosome 6 Contains the
            5' end of the FOXO3A gene for forkhead box O3A, part of a
            novel gene and a pseudogene similar to SMT3, complete
            sequence
          Length = 72254

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  ctgcgcggcccggctccgcg 341
            ||||||||||||||||||||
Sbjct: 9971 ctgcgcggcccggctccgcg 9952

>gb|DQ397603.1| Cenarchaeum symbiosum clone C08B04, complete sequence
          Length = 46177

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 270  tccgtgccggcgccgggccc 289
            ||||||||||||||||||||
Sbjct: 5915 tccgtgccggcgccgggccc 5896

>gb|DQ397589.1| Cenarchaeum symbiosum clone C01F06, complete sequence
          Length = 34540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   tccgtgccggcgccgggccc 289
             ||||||||||||||||||||
Sbjct: 13855 tccgtgccggcgccgggccc 13874

>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 203    gtcgacggcgaacagggcggcctcgtcg 230
              |||| |||||||||| ||||||||||||
Sbjct: 310169 gtcggcggcgaacagcgcggcctcgtcg 310196

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 208     cggcgaacagggcggcctcg 227
               ||||||||||||||||||||
Sbjct: 4197850 cggcgaacagggcggcctcg 4197869

>gb|AF285634.1|AF285634 Burkholderia thailandensis capsule gene cluster, partial sequence
          Length = 7873

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 412 cgtacgcgccccacggccgg 431
           ||||||||||||||||||||
Sbjct: 620 cgtacgcgccccacggccgg 639

>dbj|AK007485.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length
           enriched library, clone:1810013L24 product:hypothetical
           protein, full insert sequence
          Length = 1347

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 280 cgccgggcccctcgttcccg 299
           ||||||||||||||||||||
Sbjct: 257 cgccgggcccctcgttcccg 276

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 261      acgcgcccgtccgtgccggcgccgggcccctcgttcccgtactc 304
                ||||||||  ||||| ||||||||||||||| |||  |||||||
Sbjct: 15867463 acgcgccccgccgtgtcggcgccgggccccttgttggcgtactc 15867506

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 338      cgcgccgggccagcccgtcc 357
                ||||||||||||||||||||
Sbjct: 23842983 cgcgccgggccagcccgtcc 23843002

>gb|AY117439.1| Streptomyces carzinostaticus subsp. neocarzinostaticus
            neocarzinostatin biosynthetic locus, complete sequence
          Length = 92294

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 330  cccggctccgcgccgggcca 349
            ||||||||||||||||||||
Sbjct: 7700 cccggctccgcgccgggcca 7719

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 209     ggcgaacagggcggcctcgtcgtagccc 236
               |||| |||||||||||||||||| ||||
Sbjct: 1451503 ggcggacagggcggcctcgtcgtcgccc 1451530

>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1081_G10
          Length = 107955

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 261   acgcgcccgtccgtgccggcgccgggcccctcgttcccgtactc 304
             ||||||||  ||||| ||||||||||||||| |||  |||||||
Sbjct: 30589 acgcgccccgccgtgtcggcgccgggccccttgttggcgtactc 30632

>dbj|AP003985.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1047_C01
          Length = 97427

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   cgcgccgggccagcccgtcc 357
             ||||||||||||||||||||
Sbjct: 31483 cgcgccgggccagcccgtcc 31502

>gb|AE005084.1| Halobacterium sp. NRC-1 section 115 of 170 of the complete genome
          Length = 11691

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  cctcgtcgtagcccatctcg 242
            ||||||||||||||||||||
Sbjct: 8117 cctcgtcgtagcccatctcg 8136

>dbj|AB006702.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPO12
          Length = 86263

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gatccaaaaatcatctgatt 20
             ||||||||||||||||||||
Sbjct: 28911 gatccaaaaatcatctgatt 28892

>dbj|AK072369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064J16, full
            insert sequence
          Length = 2346

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 261  acgcgcccgtccgtgccggcgccgggcccctcgttcccgtactc 304
            ||||||||  ||||| ||||||||||||||| |||  |||||||
Sbjct: 1863 acgcgccccgccgtgtcggcgccgggccccttgttggcgtactc 1820

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 412     cgtacgcgccccacggccgg 431
               ||||||||||||||||||||
Sbjct: 1485855 cgtacgcgccccacggccgg 1485874

>gb|L24366.1|MSGDAPB Mycobacterium bovis meso-diaminopimelate biosynthetic pathway
           (dapB) gene, complete cds
          Length = 1791

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 403 cggcccgcgcgtacgcgccc 422
           ||||||||||||||||||||
Sbjct: 943 cggcccgcgcgtacgcgccc 962


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,560,608
Number of Sequences: 3902068
Number of extensions: 2560608
Number of successful extensions: 51193
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50034
Number of HSP's gapped (non-prelim): 1157
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)