ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet100c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193093.2| Oryza sativa (japonica cultivar-group), mRNA 168 1e-38
2dbj|AK061072.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
3gb|AY103914.1| Zea mays PCO130298 mRNA sequence 159 1e-35
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
5dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
6ref|XM_470714.1| Oryza sativa (japonica cultivar-group), mRNA 60 7e-06
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 7e-06
8gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genom... 60 7e-06
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
10dbj|AK109412.2| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
11dbj|AK068720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
12gb|BT019164.1| Zea mays clone Contig829.F mRNA sequence 50 0.007
13gb|BC055499.1| Danio rerio zgc:66127, mRNA (cDNA clone MGC:66127... 50 0.007
14ref|NM_200495.1| Danio rerio zgc:66127 (zgc:66127), mRNA 50 0.007
15ref|NM_057587.3| Drosophila melanogaster RNA-binding protein 4 C... 50 0.007
16gb|AY089457.1| Drosophila melanogaster AT27014 full insert cDNA 50 0.007
17gb|AC007646.8|AC007646 Drosophila melanogaster, chromosome 3R, r... 50 0.007
18gb|AY105580.1| Zea mays PCO127552 mRNA sequence 50 0.007
19gb|AE003701.2| Drosophila melanogaster chromosome 3R, section 39... 50 0.007
20gb|U18401.1|DMU18401 Drosophila melanogaster testis-specific-RRM... 50 0.007
21ref|NM_180361.1| Arabidopsis thaliana CP29; RNA binding AT3G5346... 48 0.028
22ref|NM_115206.2| Arabidopsis thaliana CP29; RNA binding AT3G5346... 48 0.028
23gb|AY077674.1| Arabidopsis thaliana AT3g53460/F4P12_160 mRNA, co... 48 0.028
24gb|AY039909.1| Arabidopsis thaliana AT3g53460/F4P12_160 mRNA, co... 48 0.028
25emb|BX823854.1|CNS0A6O5 Arabidopsis thaliana Full-length cDNA Co... 48 0.028
26emb|BX823838.1|CNS0A6NK Arabidopsis thaliana Full-length cDNA Co... 48 0.028
27emb|BX823223.1|CNS0A6II Arabidopsis thaliana Full-length cDNA Co... 48 0.028
28gb|AY087840.1| Arabidopsis thaliana clone 38888 mRNA, complete s... 48 0.028
29dbj|D31711.1|ATHCP29B Arabidopsis thaliana mRNA for chloroplast ... 48 0.028
30dbj|D31710.1|ATHCP29A Arabidopsis thaliana gene for chloroplast ... 48 0.028
31emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BA... 48 0.028
32gb|DQ062785.1| Drosophila simulans heterogeneous nuclear ribonuc... 44 0.43
33gb|DQ062784.1| Drosophila melanogaster heterogeneous nuclear rib... 44 0.43
34emb|X62639.1|DMHRP481 D.melanogaster mRNA for hrp48.1 44 0.43
35gb|AY128430.1| Drosophila melanogaster GH26816 full insert cDNA 44 0.43
36ref|NM_164721.1| Drosophila melanogaster Heterogeneous nuclear r... 44 0.43
37ref|NM_164720.1| Drosophila melanogaster Heterogeneous nuclear r... 44 0.43
38ref|NM_057521.3| Drosophila melanogaster Heterogeneous nuclear r... 44 0.43
39gb|AY069699.1| Drosophila melanogaster LD46853 full length cDNA 44 0.43
40gb|AC099010.1| Drosophila melanogaster, chromosome 2L, region 27... 44 0.43
41gb|AC007977.12|AC007977 Drosophila melanogaster, chromosome 2L, ... 44 0.43
42gb|AE003615.3| Drosophila melanogaster chromosome 2L, section 24... 44 0.43
43gb|AC004277.1|AC004277 Drosophila melanogaster DNA sequence (P1 ... 44 0.43
44gb|AC146594.3| Mus musculus BAC clone RP24-155O13 from chromosom... 42 1.7
45gb|S51720.1| RNA recognition motif-type RNA-binding protein {RRM... 42 1.7
46ref|XM_653040.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.8
47gb|AC003989.1| Homo sapiens BAC clone CTB-7J15 from 7, complete ... 40 6.8
48gb|AC142335.1| Pan troglodytes BAC clone RP43-38M15 from 7, comp... 40 6.8
49emb|AL591063.6| Human DNA sequence from clone RP11-535K1 on chro... 40 6.8
50emb|AL161788.13| Human DNA sequence from clone RP11-421B23 on ch... 40 6.8
51emb|AL157768.6| Human DNA sequence from clone RP11-481A22 on chr... 40 6.8
52emb|AL080251.23|HSDJ93P18 Human DNA sequence from clone RP1-93P1... 40 6.8
53gb|AC109811.4| Homo sapiens BAC clone RP13-539F13 from 4, comple... 40 6.8
54dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.8
55dbj|AP003159.1| Homo sapiens genomic DNA, chromosome 1p36 clone:... 40 6.8 
>ref|NM_193093.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1053

 Score =  168 bits (85), Expect = 1e-38
 Identities = 181/213 (84%)
 Strand = Plus / Minus

                                                                       
Query: 288 ggcttcgactctgccacggtaacccggatctgcctgccgtcaaggtccactccgtcgagg 347
           ||||| || ||||| || ||||| ||||||||||||||||| ||||| || ||||| || 
Sbjct: 843 ggctttgattctgcaactgtaactcggatctgcctgccgtccaggtcaacgccgtcaaga 784

                                                                       
Query: 348 tttgagatcgcattgttgacctcatcagcagagccataggtgacgaagccaaagcccctc 407
           ||||| || ||||||||||| || ||||| |||||||||||||| || ||||| ||||||
Sbjct: 783 tttgatatggcattgttgacttcttcagcggagccataggtgacaaaaccaaaacccctc 724

                                                                       
Query: 408 gacctgccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctg 467
           ||||||||||| |||| ||| ||||||||||| ||||| |||||  |||| || || |||
Sbjct: 723 gacctgccgctctccctgtcgtagatgaccttggcatcgagcacggttccctgctcactg 664

                                            
Query: 468 aacaggttctcaagcgttgagttgtcaacaccc 500
           ||||||||||| || || |||||||| ||||||
Sbjct: 663 aacaggttctcgagtgtcgagttgtcgacaccc 631
to top
>dbj|AK061072.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-D01, full
           insert sequence
          Length = 1052

 Score =  168 bits (85), Expect = 1e-38
 Identities = 181/213 (84%)
 Strand = Plus / Minus

                                                                       
Query: 288 ggcttcgactctgccacggtaacccggatctgcctgccgtcaaggtccactccgtcgagg 347
           ||||| || ||||| || ||||| ||||||||||||||||| ||||| || ||||| || 
Sbjct: 843 ggctttgattctgcaactgtaactcggatctgcctgccgtccaggtcaacgccgtcaaga 784

                                                                       
Query: 348 tttgagatcgcattgttgacctcatcagcagagccataggtgacgaagccaaagcccctc 407
           ||||| || ||||||||||| || ||||| |||||||||||||| || ||||| ||||||
Sbjct: 783 tttgatatggcattgttgacttcttcagcggagccataggtgacaaaaccaaaacccctc 724

                                                                       
Query: 408 gacctgccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctg 467
           ||||||||||| |||| ||| ||||||||||| ||||| |||||  |||| || || |||
Sbjct: 723 gacctgccgctctccctgtcgtagatgaccttggcatcgagcacggttccctgctcactg 664

                                            
Query: 468 aacaggttctcaagcgttgagttgtcaacaccc 500
           ||||||||||| || || |||||||| ||||||
Sbjct: 663 aacaggttctcgagtgtcgagttgtcgacaccc 631
to top
>gb|AY103914.1| Zea mays PCO130298 mRNA sequence
          Length = 1127

 Score =  159 bits (80), Expect = 1e-35
 Identities = 134/152 (88%)
 Strand = Plus / Minus

                                                                       
Query: 345 aggtttgagatcgcattgttgacctcatcagcagagccataggtgacgaagccaaagccc 404
           |||||||| || |||||||||||||| || |||||||||||||||||||| ||||| |||
Sbjct: 773 aggtttgatatggcattgttgacctcctcggcagagccataggtgacgaaaccaaacccc 714

                                                                       
Query: 405 ctcgacctgccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcg 464
           || ||||||||||| |||| ||| ||||||||||||||||| ||||||| |||||| || 
Sbjct: 713 cttgacctgccgctatccctgtcgtagatgaccttagcatccagcacctgtccttgctca 654

                                           
Query: 465 ctgaacaggttctcaagcgttgagttgtcaac 496
           ||||| |||||||| || || |||||||||||
Sbjct: 653 ctgaataggttctccagagtcgagttgtcaac 622
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  131 bits (66), Expect = 2e-27
 Identities = 138/162 (85%)
 Strand = Plus / Minus

                                                                            
Query: 339      ccgtcgaggtttgagatcgcattgttgacctcatcagcagagccataggtgacgaagcca 398
                ||||| || ||||| || ||||||||||| || ||||| |||||||||||||| || |||
Sbjct: 26159846 ccgtcaagatttgatatggcattgttgacttcttcagcggagccataggtgacaaaacca 26159787

                                                                            
Query: 399      aagcccctcgacctgccgctgtcccggtcatagatgaccttagcatcaagcacctttcct 458
                || ||||||||||||||||| |||| ||| ||||||||||| ||||| |||||  |||| 
Sbjct: 26159786 aaacccctcgacctgccgctctccctgtcgtagatgaccttggcatcgagcacggttccc 26159727

                                                          
Query: 459      tgttcgctgaacaggttctcaagcgttgagttgtcaacaccc 500
                || || |||||||||||||| || || |||||||| ||||||
Sbjct: 26159726 tgctcactgaacaggttctcgagtgtcgagttgtcgacaccc 26159685



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 288      ggcttcgactctgccacggtaacccggatctgcctgccgtcaaggtcc 335
                ||||| || ||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 26160052 ggctttgattctgcaactgtaactcggatctgcctgccgtccaggtcc 26160005
to top
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0519E12
          Length = 152448

 Score =  131 bits (66), Expect = 2e-27
 Identities = 138/162 (85%)
 Strand = Plus / Minus

                                                                         
Query: 339   ccgtcgaggtttgagatcgcattgttgacctcatcagcagagccataggtgacgaagcca 398
             ||||| || ||||| || ||||||||||| || ||||| |||||||||||||| || |||
Sbjct: 51704 ccgtcaagatttgatatggcattgttgacttcttcagcggagccataggtgacaaaacca 51645

                                                                         
Query: 399   aagcccctcgacctgccgctgtcccggtcatagatgaccttagcatcaagcacctttcct 458
             || ||||||||||||||||| |||| ||| ||||||||||| ||||| |||||  |||| 
Sbjct: 51644 aaacccctcgacctgccgctctccctgtcgtagatgaccttggcatcgagcacggttccc 51585

                                                       
Query: 459   tgttcgctgaacaggttctcaagcgttgagttgtcaacaccc 500
             || || |||||||||||||| || || |||||||| ||||||
Sbjct: 51584 tgctcactgaacaggttctcgagtgtcgagttgtcgacaccc 51543



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 288   ggcttcgactctgccacggtaacccggatctgcctgccgtcaaggtcc 335
             ||||| || ||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 51910 ggctttgattctgcaactgtaactcggatctgcctgccgtccaggtcc 51863
to top
>ref|XM_470714.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 798

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 366 acctcatcagcagagccataggtgacgaagccaaagcccctcgacctgccgctgtcccgg 425
           ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || |||| |
Sbjct: 701 acctcttcagcggaaccatacgtgacaaaaccaaatccccttgacctgccactctccctg 642

                         
Query: 426 tcatagatgacctt 439
           ||||||||||||||
Sbjct: 641 tcatagatgacctt 628
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                            
Query: 366      acctcatcagcagagccataggtgacgaagccaaagcccctcgacctgccgctgtcccgg 425
                ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || |||| |
Sbjct: 14705325 acctcttcagcggaaccatacgtgacaaaaccaaatccccttgacctgccactctccctg 14705384

                              
Query: 426      tcatagatgacctt 439
                ||||||||||||||
Sbjct: 14705385 tcatagatgacctt 14705398
to top
>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete
             sequence
          Length = 130306

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                         
Query: 366   acctcatcagcagagccataggtgacgaagccaaagcccctcgacctgccgctgtcccgg 425
             ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || |||| |
Sbjct: 44237 acctcttcagcggaaccatacgtgacaaaaccaaatccccttgacctgccactctccctg 44296

                           
Query: 426   tcatagatgacctt 439
             ||||||||||||||
Sbjct: 44297 tcatagatgacctt 44310
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                            
Query: 366      acctcatcagcagagccataggtgacgaagccaaagcccctcgacctgccgctgtcccgg 425
                ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || |||| |
Sbjct: 14699859 acctcttcagcggaaccatacgtgacaaaaccaaatccccttgacctgccactctccctg 14699918

                              
Query: 426      tcatagatgacctt 439
                ||||||||||||||
Sbjct: 14699919 tcatagatgacctt 14699932
to top
>dbj|AK109412.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-G07, full
           insert sequence
          Length = 1112

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 366 acctcatcagcagagccataggtgacgaagccaaagcccctcgacctgccgctgtcccgg 425
           ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || |||| |
Sbjct: 784 acctcttcagcggaaccatacgtgacaaaaccaaatccccttgacctgccactctccctg 725

                         
Query: 426 tcatagatgacctt 439
           ||||||||||||||
Sbjct: 724 tcatagatgacctt 711
to top
>dbj|AK068720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L09, full
           insert sequence
          Length = 1172

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 366 acctcatcagcagagccataggtgacgaagccaaagcccctcgacctgccgctgtcccgg 425
           ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || |||| |
Sbjct: 792 acctcttcagcggaaccatacgtgacaaaaccaaatccccttgacctgccactctccctg 733

                         
Query: 426 tcatagatgacctt 439
           ||||||||||||||
Sbjct: 732 tcatagatgacctt 719
to top
>gb|BT019164.1| Zea mays clone Contig829.F mRNA sequence
          Length = 1109

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 288 ggcttcgactctgccacggtaacccggatctgcctgccgtc 328
           |||||||||||||| || ||||| |||||||| ||||||||
Sbjct: 297 ggcttcgactctgctaccgtaacacggatctgtctgccgtc 337
to top
>gb|BC055499.1| Danio rerio zgc:66127, mRNA (cDNA clone MGC:66127 IMAGE:2642049),
           complete cds
          Length = 1513

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 384 taggtgacgaagccaaagcccctcgacct 412
           ||||||||||||||||| |||||||||||
Sbjct: 209 taggtgacgaagccaaatcccctcgacct 181
to top
>ref|NM_200495.1| Danio rerio zgc:66127 (zgc:66127), mRNA
          Length = 1513

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 384 taggtgacgaagccaaagcccctcgacct 412
           ||||||||||||||||| |||||||||||
Sbjct: 209 taggtgacgaagccaaatcccctcgacct 181
to top
>ref|NM_057587.3| Drosophila melanogaster RNA-binding protein 4 CG9654-RA (Rbp4),
           mRNA
          Length = 1518

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 382 cataggtgacgaagccaaagcccct 406
           |||||||||||||||||||||||||
Sbjct: 331 cataggtgacgaagccaaagcccct 307
to top
>gb|AY089457.1| Drosophila melanogaster AT27014 full insert cDNA
          Length = 1499

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 382 cataggtgacgaagccaaagcccct 406
           |||||||||||||||||||||||||
Sbjct: 297 cataggtgacgaagccaaagcccct 273
to top
>gb|AC007646.8|AC007646 Drosophila melanogaster, chromosome 3R, region 87F-87F, BAC clone
             BACR03J04, complete sequence
          Length = 179454

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 382   cataggtgacgaagccaaagcccct 406
             |||||||||||||||||||||||||
Sbjct: 74385 cataggtgacgaagccaaagcccct 74409
to top
>gb|AY105580.1| Zea mays PCO127552 mRNA sequence
          Length = 1133

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 288 ggcttcgactctgccacggtaacccggatctgcctgccgtc 328
           |||||||||||||| || ||||| |||||||| ||||||||
Sbjct: 834 ggcttcgactctgctaccgtaacacggatctgtctgccgtc 794
to top
>gb|AE003701.2| Drosophila melanogaster chromosome 3R, section 39 of 118 of the
             complete sequence
          Length = 208368

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 382   cataggtgacgaagccaaagcccct 406
             |||||||||||||||||||||||||
Sbjct: 55459 cataggtgacgaagccaaagcccct 55483
to top
>gb|U18401.1|DMU18401 Drosophila melanogaster testis-specific-RRM-protein (Tsr) gene,
           complete cds
          Length = 1833

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 382 cataggtgacgaagccaaagcccct 406
           |||||||||||||||||||||||||
Sbjct: 370 cataggtgacgaagccaaagcccct 346
to top
>ref|NM_180361.1| Arabidopsis thaliana CP29; RNA binding AT3G53460 (CP29) transcript
           variant AT3G53460.2 mRNA, complete cds
          Length = 1157

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 414 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 473
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 942 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 883

                   
Query: 474 ttctcaag 481
           ||||||||
Sbjct: 882 ttctcaag 875
to top
>ref|NM_115206.2| Arabidopsis thaliana CP29; RNA binding AT3G53460 (CP29) transcript
           variant AT3G53460.1 mRNA, complete cds
          Length = 1548

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 414 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 473
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 966 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 907

                   
Query: 474 ttctcaag 481
           ||||||||
Sbjct: 906 ttctcaag 899
to top
>gb|AY077674.1| Arabidopsis thaliana AT3g53460/F4P12_160 mRNA, complete cds
          Length = 1029

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 414 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 473
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 884 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 825

                   
Query: 474 ttctcaag 481
           ||||||||
Sbjct: 824 ttctcaag 817
to top
>gb|AY039909.1| Arabidopsis thaliana AT3g53460/F4P12_160 mRNA, complete cds
          Length = 1549

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 414 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 473
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 980 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 921

                   
Query: 474 ttctcaag 481
           ||||||||
Sbjct: 920 ttctcaag 913
to top
>emb|BX823854.1|CNS0A6O5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS83ZG08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1450

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 414 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 473
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 953 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 894

                   
Query: 474 ttctcaag 481
           ||||||||
Sbjct: 893 ttctcaag 886
to top
>emb|BX823838.1|CNS0A6NK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS81ZC03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1477

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 414 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 473
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 932 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 873

                   
Query: 474 ttctcaag 481
           ||||||||
Sbjct: 872 ttctcaag 865
to top
>emb|BX823223.1|CNS0A6II Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS12ZF07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1427

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 414 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 473
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 951 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 892

                   
Query: 474 ttctcaag 481
           ||||||||
Sbjct: 891 ttctcaag 884
to top
>gb|AY087840.1| Arabidopsis thaliana clone 38888 mRNA, complete sequence
          Length = 1496

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 414 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 473
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 966 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 907

                   
Query: 474 ttctcaag 481
           ||||||||
Sbjct: 906 ttctcaag 899
to top
>dbj|D31711.1|ATHCP29B Arabidopsis thaliana mRNA for chloroplast RNA-binding protein cp29,
           partial cds
          Length = 1051

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 414 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 473
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 836 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 777

                   
Query: 474 ttctcaag 481
           ||||||||
Sbjct: 776 ttctcaag 769
to top
>dbj|D31710.1|ATHCP29A Arabidopsis thaliana gene for chloroplast RNA-binding protein cp29,
            complete cds (exon1, exon2, exon3, exon4)
          Length = 4032

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 414  ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 473
            |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 1947 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 1888

                    
Query: 474  ttctcaag 481
            ||||||||
Sbjct: 1887 ttctcaag 1880
to top
>emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12
          Length = 144628

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 414   ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 473
             |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 60652 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 60711

                     
Query: 474   ttctcaag 481
             ||||||||
Sbjct: 60712 ttctcaag 60719
to top
>gb|DQ062785.1| Drosophila simulans heterogeneous nuclear ribonucleoprotein
           (Hrb27-C) mRNA, partial cds
          Length = 1263

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 385 aggtgacgaagccaaagcccctcgacctgccgct 418
           |||| |||||||||||||| | ||||||||||||
Sbjct: 163 aggtaacgaagccaaagccgcgcgacctgccgct 130
to top
>gb|DQ062784.1| Drosophila melanogaster heterogeneous nuclear ribonucleoprotein
           (Hrb27-C) mRNA, partial cds
          Length = 1263

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 385 aggtgacgaagccaaagcccctcgacctgccgct 418
           |||| |||||||||||||| | ||||||||||||
Sbjct: 163 aggtaacgaagccaaagccgcgcgacctgccgct 130
to top
>emb|X62639.1|DMHRP481 D.melanogaster mRNA for hrp48.1
          Length = 1708

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 385 aggtgacgaagccaaagcccctcgacctgccgct 418
           |||| |||||||||||||| | ||||||||||||
Sbjct: 249 aggtaacgaagccaaagccgcgcgacctgccgct 216
to top
>gb|AY128430.1| Drosophila melanogaster GH26816 full insert cDNA
          Length = 3199

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 385 aggtgacgaagccaaagcccctcgacctgccgct 418
           |||| |||||||||||||| | ||||||||||||
Sbjct: 720 aggtaacgaagccaaagccgcgcgacctgccgct 687
to top
>ref|NM_164721.1| Drosophila melanogaster Heterogeneous nuclear ribonucleoprotein at
           27C CG10377-RC, transcript variant C (Hrb27C), mRNA
          Length = 2306

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 385 aggtgacgaagccaaagcccctcgacctgccgct 418
           |||| |||||||||||||| | ||||||||||||
Sbjct: 536 aggtaacgaagccaaagccgcgcgacctgccgct 503
to top
>ref|NM_164720.1| Drosophila melanogaster Heterogeneous nuclear ribonucleoprotein at
           27C CG10377-RB, transcript variant B (Hrb27C), mRNA
          Length = 2284

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 385 aggtgacgaagccaaagcccctcgacctgccgct 418
           |||| |||||||||||||| | ||||||||||||
Sbjct: 514 aggtaacgaagccaaagccgcgcgacctgccgct 481
to top
>ref|NM_057521.3| Drosophila melanogaster Heterogeneous nuclear ribonucleoprotein at
           27C CG10377-RA, transcript variant A (Hrb27C), mRNA
          Length = 2303

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 385 aggtgacgaagccaaagcccctcgacctgccgct 418
           |||| |||||||||||||| | ||||||||||||
Sbjct: 533 aggtaacgaagccaaagccgcgcgacctgccgct 500
to top
>gb|AY069699.1| Drosophila melanogaster LD46853 full length cDNA
          Length = 2181

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 385 aggtgacgaagccaaagcccctcgacctgccgct 418
           |||| |||||||||||||| | ||||||||||||
Sbjct: 454 aggtaacgaagccaaagccgcgcgacctgccgct 421
to top
>gb|AC099010.1| Drosophila melanogaster, chromosome 2L, region 27B-27C, BAC clone
             BACR20B21, complete sequence
          Length = 166512

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 385   aggtgacgaagccaaagcccctcgacctgccgct 418
             |||| |||||||||||||| | ||||||||||||
Sbjct: 48756 aggtaacgaagccaaagccgcgcgacctgccgct 48789
to top
>gb|AC007977.12|AC007977 Drosophila melanogaster, chromosome 2L, region 27C-27C, BAC clone
             BACR13J07, complete sequence
          Length = 174287

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 385   aggtgacgaagccaaagcccctcgacctgccgct 418
             |||| |||||||||||||| | ||||||||||||
Sbjct: 30930 aggtaacgaagccaaagccgcgcgacctgccgct 30897
to top
>gb|AE003615.3| Drosophila melanogaster chromosome 2L, section 24 of 83 of the complete
              sequence
          Length = 270751

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 385    aggtgacgaagccaaagcccctcgacctgccgct 418
              |||| |||||||||||||| | ||||||||||||
Sbjct: 167424 aggtaacgaagccaaagccgcgcgacctgccgct 167391
to top
>gb|AC004277.1|AC004277 Drosophila melanogaster DNA sequence (P1 DS01321 (D143)), complete
            sequence
          Length = 82849

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 385  aggtgacgaagccaaagcccctcgacctgccgct 418
            |||| |||||||||||||| | ||||||||||||
Sbjct: 6832 aggtaacgaagccaaagccgcgcgacctgccgct 6865
to top
>gb|AC146594.3| Mus musculus BAC clone RP24-155O13 from chromosome 14, complete
             sequence
          Length = 172361

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 442   catcaagcacctttccttgtt 462
             |||||||||||||||||||||
Sbjct: 30846 catcaagcacctttccttgtt 30826
to top
>gb|S51720.1| RNA recognition motif-type RNA-binding protein {RRM7 clone}
           [Drosophila melanogaster, mRNA Partial, 132 nt]
          Length = 132

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 390 acgaagccaaagcccctcgacctgccgct 418
           |||||||||||||| | ||||||||||||
Sbjct: 131 acgaagccaaagccgcgcgacctgccgct 103
to top
>ref|XM_653040.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0528.2), mRNA
          Length = 1287

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   catacacagcatcaacaaac 25
           ||||||||||||||||||||
Sbjct: 957 catacacagcatcaacaaac 938
to top
>gb|AC003989.1| Homo sapiens BAC clone CTB-7J15 from 7, complete sequence
          Length = 118103

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    acagcatcaacaaacattca 30
             ||||||||||||||||||||
Sbjct: 16233 acagcatcaacaaacattca 16252
to top
>gb|AC142335.1| Pan troglodytes BAC clone RP43-38M15 from 7, complete sequence
          Length = 181138

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     acagcatcaacaaacattca 30
              ||||||||||||||||||||
Sbjct: 150105 acagcatcaacaaacattca 150124
to top
>emb|AL591063.6| Human DNA sequence from clone RP11-535K1 on chromosome 6, complete
             sequence
          Length = 100426

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    atttctactttttctatcaa 114
             ||||||||||||||||||||
Sbjct: 77454 atttctactttttctatcaa 77473
to top
>emb|AL161788.13| Human DNA sequence from clone RP11-421B23 on chromosome 9 Contains a
              novel pseudogene and a pseudogene similar to part of
              ribosomal protein S3A (RPS3A), complete sequence
          Length = 170460

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    gaaaatagtagtagaaacta 212
              ||||||||||||||||||||
Sbjct: 134178 gaaaatagtagtagaaacta 134197
to top
>emb|AL157768.6| Human DNA sequence from clone RP11-481A22 on chromosome 13, complete
              sequence
          Length = 145603

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     caaaatttctactttttcta 110
              ||||||||||||||||||||
Sbjct: 119456 caaaatttctactttttcta 119437
to top
>emb|AL080251.23|HSDJ93P18 Human DNA sequence from clone RP1-93P18 on chromosome 1p35.2-36.23
             Contains the 5' end of the ALDH4A1 gene for aldehyde
             dehydrogenase 4 family, member A1, a novel gene and a CpG
             island, complete sequence
          Length = 103216

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 162   ttcacttcccagtctctctcatca 185
             |||||||||| |||||||||||||
Sbjct: 47385 ttcacttccctgtctctctcatca 47408
to top
>gb|AC109811.4| Homo sapiens BAC clone RP13-539F13 from 4, complete sequence
          Length = 93967

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 80    aatgactttgacaaaatttctactttttctat 111
             |||||||||||||||||  |||| ||||||||
Sbjct: 77105 aatgactttgacaaaatagctacattttctat 77136
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 326     gtcaaggtccactccgtcga 345
               ||||||||||||||||||||
Sbjct: 1577044 gtcaaggtccactccgtcga 1577063
to top
>dbj|AP003159.1| Homo sapiens genomic DNA, chromosome 1p36 clone:1024F16, complete
             sequence
          Length = 113733

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 162   ttcacttcccagtctctctcatca 185
             |||||||||| |||||||||||||
Sbjct: 48505 ttcacttccctgtctctctcatca 48528


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,049,550
Number of Sequences: 3902068
Number of extensions: 4049550
Number of successful extensions: 86937
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86681
Number of HSP's gapped (non-prelim): 256
length of query: 500
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 478
effective length of database: 17,147,199,772
effective search space: 8196361491016
effective search space used: 8196361491016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top