| Clone Name | rbaet100b09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL645912.18| Mouse DNA sequence from clone RP23-134G19 on chromosome 11 Contains the 5' end of the gene for a novel protein similar to human KIBRA, a pseudogene similar to part of actin, the Odz2 gene for odd Oz/ten-m homolog 2 (Drosophila) and two CpG islands, complete sequence Length = 186736 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 caacactactacaccaaccaaccaac 161 |||||| ||||||||||||||||||| Sbjct: 41458 caacaccactacaccaaccaaccaac 41483
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 caggctggggcggacgtcaac 288 ||||||||||||||||||||| Sbjct: 2870320 caggctggggcggacgtcaac 2870340
>gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome 1, complete sequence Length = 169832 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tggatatatatatgcccagga 33 ||||||||||||||||||||| Sbjct: 89927 tggatatatatatgcccagga 89907
>gb|AC125278.1| Mus musculus BAC clone RP24-481N2 from 12, complete sequence Length = 132398 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tggatatatatatgcccagga 33 ||||||||||||||||||||| Sbjct: 9304 tggatatatatatgcccagga 9284
>gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, complete sequence Length = 211178 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tggatatatatatgcccagga 33 ||||||||||||||||||||| Sbjct: 210850 tggatatatatatgcccagga 210830
>gb|AC164971.2| Mus musculus BAC clone RP23-441D19 from chromosome 9, complete sequence Length = 213482 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tggatatatatatgcccagga 33 ||||||||||||||||||||| Sbjct: 152024 tggatatatatatgcccagga 152004
>gb|AC159619.2| Mus musculus BAC clone RP24-392J3 from chromosome 12, complete sequence Length = 171965 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tggatatatatatgcccagga 33 ||||||||||||||||||||| Sbjct: 169823 tggatatatatatgcccagga 169803
>gb|AC001231.3| Homo sapiens chromosome 17, clone CTB-44J6, complete sequence Length = 134457 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 154 caaccaacggtttaaaacacacaca 178 |||||||| |||||||||||||||| Sbjct: 49024 caaccaactgtttaaaacacacaca 49000
>gb|AC154727.2| Mus musculus BAC clone RP24-375I15 from 14, complete sequence Length = 189907 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 aatgctaggccatatctgcag 270 ||||||||||||||||||||| Sbjct: 75263 aatgctaggccatatctgcag 75283
>gb|AC133936.5| Mus musculus BAC clone RP24-399H1 from chromosome 6, complete sequence Length = 177971 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tggatatatatatgcccagga 33 ||||||||||||||||||||| Sbjct: 83139 tggatatatatatgcccagga 83119
>gb|AC145963.5| Gallus gallus BAC clone CH261-20A24 from chromosome unknown, complete sequence Length = 185318 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 ctgcagccttgctggtgcttt 342 ||||||||||||||||||||| Sbjct: 26934 ctgcagccttgctggtgcttt 26914
>gb|AC112264.6| Mus musculus BAC clone RP23-421E18 from 1, complete sequence Length = 185468 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tggatatatatatgcccagga 33 ||||||||||||||||||||| Sbjct: 26009 tggatatatatatgcccagga 25989
>emb|CT030169.4| Mouse DNA sequence from clone RP24-292J1 on chromosome 12, complete sequence Length = 178789 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tggatatatatatgcccagga 33 ||||||||||||||||||||| Sbjct: 156662 tggatatatatatgcccagga 156642
>emb|CT025528.10| Mouse DNA sequence from clone RP23-205O23 on chromosome 14, complete sequence Length = 224168 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 aatgctaggccatatctgcag 270 ||||||||||||||||||||| Sbjct: 24825 aatgctaggccatatctgcag 24805
>emb|AL606910.14| Mouse DNA sequence from clone RP23-282C23 on chromosome 4, complete sequence Length = 185210 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tggatatatatatgcccagga 33 ||||||||||||||||||||| Sbjct: 173643 tggatatatatatgcccagga 173623
>emb|AL645567.7| Mouse DNA sequence from clone RP23-181A7 on chromosome X, complete sequence Length = 111339 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tggatatatatatgcccagga 33 ||||||||||||||||||||| Sbjct: 67735 tggatatatatatgcccagga 67715
>ref|XM_507879.1| PREDICTED: Pan troglodytes similar to Pro-neuregulin-3 precursor (Pro-NRG3) (LOC450561), mRNA Length = 654 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 atttggggctggtgctagtt 309 |||||||||||||||||||| Sbjct: 427 atttggggctggtgctagtt 408
>gb|AC090426.1| Homo sapiens chromosome 17 clone 205m17 map 17q21.1, complete sequence Length = 138999 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 taggccatatctgcaggctg 274 |||||||||||||||||||| Sbjct: 66449 taggccatatctgcaggctg 66468
>ref|XM_871928.1| PREDICTED: Bos taurus similar to transient receptor potential cation channel, subfamily V, member 3, transcript variant 2 (LOC523538), mRNA Length = 2636 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ggctggggcggacgtcaacg 289 |||||||||||||||||||| Sbjct: 708 ggctggggcggacgtcaacg 727
>ref|XM_601838.2| PREDICTED: Bos taurus similar to transient receptor potential cation channel, subfamily V, member 3, transcript variant 1 (LOC523538), mRNA Length = 2373 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ggctggggcggacgtcaacg 289 |||||||||||||||||||| Sbjct: 708 ggctggggcggacgtcaacg 727
>ref|XM_460682.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F08272g) partial mRNA Length = 768 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 aaacacacacaagtcaagag 187 |||||||||||||||||||| Sbjct: 322 aaacacacacaagtcaagag 341
>ref|NM_008734.1| Mus musculus neuregulin 3 (Nrg3), mRNA Length = 2538 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 atttggggctggtgctagtt 309 |||||||||||||||||||| Sbjct: 1114 atttggggctggtgctagtt 1095
>ref|NM_001010848.2| Homo sapiens neuregulin 3 (NRG3), mRNA Length = 2091 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 atttggggctggtgctagtt 309 |||||||||||||||||||| Sbjct: 820 atttggggctggtgctagtt 801
>gb|AC091276.7| Mus musculus chromosome 15, clone RP23-167B4, complete sequence Length = 255663 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 agcaagatggatatatatat 25 |||||||||||||||||||| Sbjct: 145002 agcaagatggatatatatat 144983
>emb|CR392350.11| Zebrafish DNA sequence from clone DKEY-61N21 in linkage group 5, complete sequence Length = 230648 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 aaacacacacaagtcaagag 187 |||||||||||||||||||| Sbjct: 128623 aaacacacacaagtcaagag 128642
>gb|AC132596.5| Mus musculus BAC clone RP24-173K19 from chromosome 12, complete sequence Length = 183629 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 agaaacaatggggtcagctt 75 |||||||||||||||||||| Sbjct: 180007 agaaacaatggggtcagctt 179988
>gb|AC102633.7| Mus musculus chromosome 15, clone RP23-326O18, complete sequence Length = 225738 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 agcaagatggatatatatat 25 |||||||||||||||||||| Sbjct: 13872 agcaagatggatatatatat 13853
>gb|AC080112.15| Homo sapiens chromosome 17, clone CTD-2267D19, complete sequence Length = 175014 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 taggccatatctgcaggctg 274 |||||||||||||||||||| Sbjct: 50374 taggccatatctgcaggctg 50393
>gb|AC018629.12| Homo sapiens chromosome 17, clone RP11-58O9, complete sequence Length = 166234 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 taggccatatctgcaggctg 274 |||||||||||||||||||| Sbjct: 28372 taggccatatctgcaggctg 28353
>emb|AL096706.10|HSJ684F13 Human DNA sequence from clone RP4-684F13 on chromosome 10 Contains the 5' end of the NRG3 gene for neuregulin 3 and two CpG islands, complete sequence Length = 117230 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 atttggggctggtgctagtt 309 |||||||||||||||||||| Sbjct: 105933 atttggggctggtgctagtt 105914
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 aaacacacacaagtcaagag 187 |||||||||||||||||||| Sbjct: 660591 aaacacacacaagtcaagag 660610
>emb|AL672143.12| Mouse DNA sequence from clone RP23-467P3 on chromosome 11 Contains part of a novel gene, complete sequence Length = 170167 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccatatctgcaggctggggc 278 |||||||||||||||||||| Sbjct: 23158 ccatatctgcaggctggggc 23177
>emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chromosome 11 Contains part of the Abca13 gene for ATP-binding cassette sub-family A (ABC1) member 13, complete sequence Length = 205759 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 gaaaaacgtctttgacatgt 111 |||||||||||||||||||| Sbjct: 2410 gaaaaacgtctttgacatgt 2429
>gb|AC183387.3| Pan troglodytes BAC clone CH251-113M12 from chromosome unknown, complete sequence Length = 175955 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 aacatggacagaaacaatgg 66 |||||||||||||||||||| Sbjct: 162667 aacatggacagaaacaatgg 162648
>dbj|AK138643.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330091H12 product:neuregulin 3, full insert sequence Length = 3608 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 atttggggctggtgctagtt 309 |||||||||||||||||||| Sbjct: 692 atttggggctggtgctagtt 673
>gb|AC099017.1| Drosophila melanogaster, chromosome 2L, region 37D-37E, BAC clone BACR27M12, complete sequence Length = 157766 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 accaaccaacggtttaaaac 171 |||||||||||||||||||| Sbjct: 13702 accaaccaacggtttaaaac 13721
>emb|BX470068.7| Zebrafish DNA sequence from clone CH211-219C8 in linkage group 1, complete sequence Length = 210511 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 ggtttaaaacacacacaagt 181 |||||||||||||||||||| Sbjct: 148395 ggtttaaaacacacacaagt 148414
>gb|AC007082.5|AC007082 Drosophila melanogaster, chromosome 2L, region 37D, BAC clone BACR28G24, complete sequence Length = 171375 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 accaaccaacggtttaaaac 171 |||||||||||||||||||| Sbjct: 119894 accaaccaacggtttaaaac 119913
>gb|DQ001411.1| Homo sapiens neuregulin-3 (NRG3) mRNA, complete cds, alternatively spliced Length = 2091 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 atttggggctggtgctagtt 309 |||||||||||||||||||| Sbjct: 820 atttggggctggtgctagtt 801
>gb|DQ338459.1| Homo sapiens neuregulin-3-like polypeptide mRNA, complete cds Length = 976 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 atttggggctggtgctagtt 309 |||||||||||||||||||| Sbjct: 104 atttggggctggtgctagtt 85
>gb|AE003662.3| Drosophila melanogaster chromosome 2L, section 71 of 83 of the complete sequence Length = 266205 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 accaaccaacggtttaaaac 171 |||||||||||||||||||| Sbjct: 251466 accaaccaacggtttaaaac 251485
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 gtcctttcagttgaaaaacg 99 |||||||||||||||||||| Sbjct: 2252803 gtcctttcagttgaaaaacg 2252784
>gb|AF091847.1|AF091847 Mus musculus otoconin-90 (Oc90) gene, partial cds Length = 8142 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 agcaagatggatatatatat 25 |||||||||||||||||||| Sbjct: 6491 agcaagatggatatatatat 6510
>emb|AL954311.13| Zebrafish DNA sequence from clone CH211-138M12 in linkage group 5, complete sequence Length = 168421 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 aaacacacacaagtcaagag 187 |||||||||||||||||||| Sbjct: 102694 aaacacacacaagtcaagag 102675
>dbj|AB094591.1| Allium fistulosum lfs mRNA for lachrymatory factor synthase, complete cds, note:type-63E Length = 682 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 acggtttaaaacacacacaa 179 |||||||||||||||||||| Sbjct: 558 acggtttaaaacacacacaa 539
>dbj|AB094590.1| Allium fistulosum lfs mRNA for lachrymatory factor synthase, complete cds, note:type-63K Length = 739 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 acggtttaaaacacacacaa 179 |||||||||||||||||||| Sbjct: 615 acggtttaaaacacacacaa 596
>gb|AC138307.2| Mus musculus BAC clone RP24-159M5 from 12, complete sequence Length = 165732 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 agaaacaatggggtcagctt 75 |||||||||||||||||||| Sbjct: 131312 agaaacaatggggtcagctt 131331
>emb|CT030231.6| Mouse DNA sequence from clone RP24-331M15 on chromosome 14, complete sequence Length = 163967 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 atttggggctggtgctagtt 309 |||||||||||||||||||| Sbjct: 103478 atttggggctggtgctagtt 103459
>gb|AF010130.1|AF010130 Mus musculus neuregulin-3 (NRG3) mRNA, complete cds Length = 2538 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 atttggggctggtgctagtt 309 |||||||||||||||||||| Sbjct: 1114 atttggggctggtgctagtt 1095 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,858,768 Number of Sequences: 3902068 Number of extensions: 3858768 Number of successful extensions: 160039 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 159881 Number of HSP's gapped (non-prelim): 158 length of query: 360 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 338 effective length of database: 17,147,199,772 effective search space: 5795753522936 effective search space used: 5795753522936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)