ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet100b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009261.1| Triticum aestivum clone wlk4.pk0018.f9:fis, full ... 422 e-115
2gb|BT016869.1| Zea mays clone Contig702 mRNA sequence 101 2e-18
3gb|AY109326.1| Zea mays CL1256_1 mRNA sequence 96 1e-16
4gb|AC144926.6| Mus musculus chromosome 8, clone RP23-8E24, compl... 42 1.5
5gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
6gb|AC092189.3| Drosophila melanogaster clone BACR34M11, complete... 42 1.5
7ref|NM_010236.1| Mus musculus folylpolyglutamyl synthetase (Fpgs... 42 1.5
8gb|BC005484.1| Mus musculus folylpolyglutamyl synthetase, mRNA (... 42 1.5
9ref|XM_765666.1| Giardia lamblia ATCC 50803 sphingomyelinase-lik... 42 1.5
10dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 42 1.5
11dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 42 1.5
12dbj|AK157040.1| Mus musculus activated spleen cDNA, RIKEN full-l... 42 1.5
13gb|AC026330.12| Homo sapiens 3 BAC RP11-414D23 (Roswell Park Can... 42 1.5
14dbj|AK041952.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 1.5
15dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17dbj|AK121943.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
18dbj|AK111522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
19gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 ... 42 1.5
20gb|U33557.1|MMU33557 Mus musculus folylpolyglutamate synthetase ... 42 1.5
21gb|U32197.1|MMU32197 Mus musculus folylpolyglutamate synthetase ... 42 1.5
22gb|U63852.1|DMU63852 Drosophila melanogaster decapentaplegic pro... 42 1.5
23gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
24emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396... 42 1.5
25emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.5
26gb|AC004369.1|AC004369 Drosophila melanogaster DNA sequence (P1 ... 42 1.5
27emb|AL772271.11| Mouse DNA sequence from clone RP23-17P12 on chr... 42 1.5
28gb|AY061885.1| Mus musculus ubiquitin ligase E3 alpha-II mRNA, p... 40 6.1
29ref|NM_190043.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
30ref|XM_473467.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
31gb|AC122235.5| Mus musculus BAC clone RP23-139H6 from chromosome... 40 6.1
32gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 6.1
33gb|AY280958.1| Mus musculus ubiquitin ligase UBR2 (Ubr2) mRNA, c... 40 6.1
34emb|AL354763.17| Human DNA sequence from clone RP11-357L1 on chr... 40 6.1
35emb|BX018124.1|CNS08M5C Single read from an extremity of a full-... 40 6.1
36emb|BX018123.1|CNS08M5B Single read from an extremity of a full-... 40 6.1
37emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
38emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
39emb|BX908814.1| Tetraodon nigroviridis 40 6.1
40gb|AC156939.5| Mus musculus BAC clone RP23-136O24 from chromosom... 40 6.1
41gb|AY118908.1| Drosophila melanogaster LD20162 full insert cDNA 40 6.1
42ref|NM_164698.1| Drosophila melanogaster CG31633-RA (CG31633), mRNA 40 6.1
43dbj|AK143202.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 6.1
44dbj|AK147445.1| Mus musculus cDNA, RIKEN full-length enriched li... 40 6.1
45gb|AC022313.5| Homo sapiens BAC clone RP11-437G1 from 4, complet... 40 6.1
46gb|AC092230.1|AC092230 Drosophila melanogaster, chromosome 2L, r... 40 6.1
47gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 6.1
48dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
49dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
50gb|AC092635.2| Homo sapiens BAC clone RP11-342E23 from 2, comple... 40 6.1
51dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
52dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
53ref|NM_146078.2| Mus musculus ubiquitin protein ligase E3 compon... 40 6.1
54dbj|AK122254.2| Mus musculus mRNA for mKIAA0349 protein 40 6.1
55dbj|AK111704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
56dbj|AK072640.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
57dbj|AK066698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
58gb|AE003614.4| Drosophila melanogaster chromosome 2L, section 23... 40 6.1
59gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 6.1
60gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 6.1
61gb|AC004301.1|AC004301 Drosophila melanogaster DNA sequence (P1 ... 40 6.1
62gb|BC075642.1| Mus musculus ubiquitin protein ligase E3 componen... 40 6.1 
>gb|BT009261.1| Triticum aestivum clone wlk4.pk0018.f9:fis, full insert mRNA
           sequence
          Length = 1111

 Score =  422 bits (213), Expect = e-115
 Identities = 307/336 (91%), Gaps = 13/336 (3%)
 Strand = Plus / Minus

                                                                       
Query: 118 gggaaaacagacaccatcttgggcacgagctggttgagctgcccggcgaaaaacccaaga 177
           |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 876 gggaaaacagacaccatcttgggcacgagctgattgagctgcccggggaaaaacccaaga 817

                                                                       
Query: 178 ggatcctcctcctccctcccaatgcacaccgattacactcacacgaggccggtccatcac 237
           ||||     |||||||||||||||||||| ||||||||||||| |||||    |||||||
Sbjct: 816 ggat----atcctccctcccaatgcacacggattacactcacaggaggc----ccatcac 765

                                                                       
Query: 238 accagcattacttaagagatagtaaaaccttaaacctctcccaattcagacgcagaaatc 297
           ||||||||||||||| ||||    ||||||||||||||||  |||||| |||||||||||
Sbjct: 764 accagcattacttaa-agat----aaaccttaaacctctcttaattcacacgcagaaatc 710

                                                                       
Query: 298 gacggtttgcaggaaatcatccatgcctcggccaaagtcgcagccgggcatctccaggaa 357
           ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 709 gacggtttgcaggaaatcatccatgccccggccaaagtcgcagccaggcatctccaggaa 650

                                                                       
Query: 358 gtcgtcaccgatgtcgaggtccatgtccagctccagctcctcgtcggccaagtcgccgag 417
           |||||| |||||||||||||||||||||||||| || ||||||||||||| ||| |||||
Sbjct: 649 gtcgtcgccgatgtcgaggtccatgtccagctcgaggtcctcgtcggccaggtcaccgag 590

                                               
Query: 418 cagcaggtcctgttcgccgtccaagtaagccgacgc 453
           |||||| |||||||||||||||||||||||||||||
Sbjct: 589 cagcagatcctgttcgccgtccaagtaagccgacgc 554



 Score =  147 bits (74), Expect = 4e-32
 Identities = 92/97 (94%), Gaps = 2/97 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggaccaacattgacagataacataaacaagagcaacttaacataaccagcagctactata 60
            |||||||||||||||| |||||||||  |||| ||| |||||||||||||||||||||||
Sbjct: 1011 ggaccaacattgacaggtaacataaa--agaggaacataacataaccagcagctactata 954

                                                 
Query: 61   acttatcacaatgtaacctactatcaaaaatactctc 97
            |||||||||||||||||||||||||||||||||||||
Sbjct: 953  acttatcacaatgtaacctactatcaaaaatactctc 917
to top
>gb|BT016869.1| Zea mays clone Contig702 mRNA sequence
          Length = 1808

 Score =  101 bits (51), Expect = 2e-18
 Identities = 137/165 (83%), Gaps = 3/165 (1%)
 Strand = Plus / Plus

                                                                       
Query: 279 caattcagacgcagaaatcgacggtttgcaggaaatcatccatgcctcggccaaagtcgc 338
           ||||||| ||||| ||||| |||||||||||||| || |||||||| ||||| | |||||
Sbjct: 374 caattcacacgcaaaaatcaacggtttgcaggaagtcgtccatgccgcggccgaggtcgc 433

                                                                       
Query: 339 agccgggcatctccaggaagtcgtcaccgat---gtcgaggtccatgtccagctccagct 395
           |||||||||||||| ||||| ||||   |||   ||||||||| | ||| | ||||| ||
Sbjct: 434 agccgggcatctccgggaagacgtcgttgatgtcgtcgaggtcgaggtcgatctccatct 493

                                                        
Query: 396 cctcgtcggccaagtcgccgagcagcaggtcctgttcgccgtcca 440
           |||||||  | ||||| |||||||| ||||| |||||| ||||||
Sbjct: 494 cctcgtccccgaagtccccgagcaggaggtcatgttcgtcgtcca 538
to top
>gb|AY109326.1| Zea mays CL1256_1 mRNA sequence
          Length = 2360

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                       
Query: 280 aattcagacgcagaaatcgacggtttgcaggaaatcatccatgcctcggccaaagtcgca 339
           |||||| ||||||||||| ||||||||||||||||| |||||||| ||||| | ||||||
Sbjct: 340 aattcacacgcagaaatcaacggtttgcaggaaatcgtccatgccgcggccgaggtcgca 281

                                   
Query: 340 gccgggcatctccaggaagtcgtc 363
           ||| ||||||||| ||||| ||||
Sbjct: 280 gccaggcatctccgggaagacgtc 257
to top
>gb|AC144926.6| Mus musculus chromosome 8, clone RP23-8E24, complete sequence
          Length = 214694

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     ataaacaagagcaacttaaca 42
              |||||||||||||||||||||
Sbjct: 129520 ataaacaagagcaacttaaca 129540
to top
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23,
              complete sequence
          Length = 191765

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 386    agctccagctcctcgtcggcc 406
              |||||||||||||||||||||
Sbjct: 153911 agctccagctcctcgtcggcc 153931
to top
>gb|AC092189.3| Drosophila melanogaster clone BACR34M11, complete sequence
          Length = 168540

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 18    taacataaacaagagcaacttaaca 42
             |||||||||||||||||| ||||||
Sbjct: 74247 taacataaacaagagcaatttaaca 74223
to top
>ref|NM_010236.1| Mus musculus folylpolyglutamyl synthetase (Fpgs), mRNA
          Length = 2216

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 182  cctcctcctccctcccaatgc 202
            |||||||||||||||||||||
Sbjct: 2075 cctcctcctccctcccaatgc 2095
to top
>gb|BC005484.1| Mus musculus folylpolyglutamyl synthetase, mRNA (cDNA clone MGC:7296
            IMAGE:3485401), complete cds
          Length = 2215

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 182  cctcctcctccctcccaatgc 202
            |||||||||||||||||||||
Sbjct: 2065 cctcctcctccctcccaatgc 2085
to top
>ref|XM_765666.1| Giardia lamblia ATCC 50803 sphingomyelinase-like phosphodiesterase
           (GLP_609_52230_50911) partial mRNA
          Length = 1320

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 171 cccaagaggatcctcctcctccctc 195
           ||||||||||||||| |||||||||
Sbjct: 597 cccaagaggatcctcttcctccctc 573
to top
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 293     aaatcgacggtttgcaggaaa 313
               |||||||||||||||||||||
Sbjct: 3127623 aaatcgacggtttgcaggaaa 3127643
to top
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 178     ggatcctcctcctccctccca 198
               |||||||||||||||||||||
Sbjct: 1236088 ggatcctcctcctccctccca 1236068
to top
>dbj|AK157040.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830114J03 product:folylpolyglutamyl
            synthetase, full insert sequence
          Length = 2223

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 182  cctcctcctccctcccaatgc 202
            |||||||||||||||||||||
Sbjct: 2083 cctcctcctccctcccaatgc 2103
to top
>gb|AC026330.12| Homo sapiens 3 BAC RP11-414D23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 188205

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    gacagataacataaacaagag 32
             |||||||||||||||||||||
Sbjct: 13495 gacagataacataaacaagag 13475
to top
>dbj|AK041952.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630048J24 product:folylpolyglutamyl
            synthetase, full insert sequence
          Length = 2405

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 182  cctcctcctccctcccaatgc 202
            |||||||||||||||||||||
Sbjct: 2265 cctcctcctccctcccaatgc 2285
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 383      tccagctccagctcctcgtcg 403
                |||||||||||||||||||||
Sbjct: 23669267 tccagctccagctcctcgtcg 23669247
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 386      agctccagctcctcgtcggcc 406
                |||||||||||||||||||||
Sbjct: 27278943 agctccagctcctcgtcggcc 27278963
to top
>dbj|AK121943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107F03, full
           insert sequence
          Length = 2924

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 383 tccagctccagctcctcgtcg 403
           |||||||||||||||||||||
Sbjct: 959 tccagctccagctcctcgtcg 939
to top
>dbj|AK111522.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M11, full
           insert sequence
          Length = 2776

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 383 tccagctccagctcctcgtcg 403
           |||||||||||||||||||||
Sbjct: 952 tccagctccagctcctcgtcg 932
to top
>gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 of 83 of the complete
              sequence
          Length = 303641

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 18     taacataaacaagagcaacttaaca 42
              |||||||||||||||||| ||||||
Sbjct: 257956 taacataaacaagagcaatttaaca 257932
to top
>gb|U33557.1|MMU33557 Mus musculus folylpolyglutamate synthetase precursor (Fpgs) mRNA,
            complete cds
          Length = 2247

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 182  cctcctcctccctcccaatgc 202
            |||||||||||||||||||||
Sbjct: 2099 cctcctcctccctcccaatgc 2119
to top
>gb|U32197.1|MMU32197 Mus musculus folylpolyglutamate synthetase mRNA, nuclear gene
            encoding cytosolic and mitochondrial protein, complete
            cds
          Length = 2216

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 182  cctcctcctccctcccaatgc 202
            |||||||||||||||||||||
Sbjct: 2075 cctcctcctccctcccaatgc 2095
to top
>gb|U63852.1|DMU63852 Drosophila melanogaster decapentaplegic protein (dpp) gene, disk
            region partial sequence, SLY1 homologous (Slh) gene,
            complete cds, and out at first protein (oaf) gene,
            partial cds
          Length = 13119

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 18   taacataaacaagagcaacttaaca 42
            |||||||||||||||||| ||||||
Sbjct: 8435 taacataaacaagagcaatttaaca 8411
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 383      tccagctccagctcctcgtcg 403
                |||||||||||||||||||||
Sbjct: 23597454 tccagctccagctcctcgtcg 23597434
to top
>emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 157690

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 383   tccagctccagctcctcgtcg 403
             |||||||||||||||||||||
Sbjct: 37143 tccagctccagctcctcgtcg 37163
to top
>emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 128795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 383   tccagctccagctcctcgtcg 403
             |||||||||||||||||||||
Sbjct: 86355 tccagctccagctcctcgtcg 86375
to top
>gb|AC004369.1|AC004369 Drosophila melanogaster DNA sequence (P1 DS07066 (D70)), complete
            sequence
          Length = 77798

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 18   taacataaacaagagcaacttaaca 42
            |||||||||||||||||| ||||||
Sbjct: 8602 taacataaacaagagcaatttaaca 8626
to top
>emb|AL772271.11| Mouse DNA sequence from clone RP23-17P12 on chromosome 2, complete
             sequence
          Length = 204136

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   cctcctcctccctcccaatgc 202
             |||||||||||||||||||||
Sbjct: 97612 cctcctcctccctcccaatgc 97592
to top
>gb|AY061885.1| Mus musculus ubiquitin ligase E3 alpha-II mRNA, partial cds
          Length = 5265

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 caagaggatcctcctcctcc 192
           ||||||||||||||||||||
Sbjct: 541 caagaggatcctcctcctcc 522
to top
>ref|NM_190043.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3507

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 ccagctccagctcctcgtcg 403
           ||||||||||||||||||||
Sbjct: 123 ccagctccagctcctcgtcg 142
to top
>ref|XM_473467.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1704

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 374 aggtccatgtccagctccagctcctcgt 401
           |||||||||||||| ||||| |||||||
Sbjct: 863 aggtccatgtccaggtccaggtcctcgt 836
to top
>gb|AC122235.5| Mus musculus BAC clone RP23-139H6 from chromosome 12, complete sequence
          Length = 190293

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   ctcctccctcccaatgcaca 205
             ||||||||||||||||||||
Sbjct: 32122 ctcctccctcccaatgcaca 32141
to top
>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of
              11 of the complete sequence
          Length = 613322

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     gctactataacttatcacaa 71
              ||||||||||||||||||||
Sbjct: 338431 gctactataacttatcacaa 338450
to top
>gb|AY280958.1| Mus musculus ubiquitin ligase UBR2 (Ubr2) mRNA, complete cds
          Length = 5438

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 caagaggatcctcctcctcc 192
           ||||||||||||||||||||
Sbjct: 566 caagaggatcctcctcctcc 547
to top
>emb|AL354763.17| Human DNA sequence from clone RP11-357L1 on chromosome 13 Contains an
             ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G
             variant 1 (ATP6V1G1) pseudogene, complete sequence
          Length = 192963

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    gctactataacttatcacaa 71
             ||||||||||||||||||||
Sbjct: 65020 gctactataacttatcacaa 65039
to top
>emb|BX018124.1|CNS08M5C Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA27BF07 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 883

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 387 gctccagctcctcgtcggcc 406
           ||||||||||||||||||||
Sbjct: 174 gctccagctcctcgtcggcc 193
to top
>emb|BX018123.1|CNS08M5B Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA27BF07 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 738

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 387 gctccagctcctcgtcggcc 406
           ||||||||||||||||||||
Sbjct: 631 gctccagctcctcgtcggcc 612
to top
>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17,
             complete sequence
          Length = 167269

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 374   aggtccatgtccagctccagctcctcgt 401
             |||||||||||||| ||||| |||||||
Sbjct: 18477 aggtccatgtccaggtccaggtcctcgt 18504
to top
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
              complete sequence
          Length = 127506

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 374    aggtccatgtccagctccagctcctcgt 401
              |||||||||||||| ||||| |||||||
Sbjct: 124296 aggtccatgtccaggtccaggtcctcgt 124323
to top
>emb|BX908814.1| Tetraodon nigroviridis
          Length = 120100

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   agaggatcctcctcctccct 194
             ||||||||||||||||||||
Sbjct: 47783 agaggatcctcctcctccct 47764
to top
>gb|AC156939.5| Mus musculus BAC clone RP23-136O24 from chromosome 12, complete sequence
          Length = 218561

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    ctcctccctcccaatgcaca 205
              ||||||||||||||||||||
Sbjct: 186448 ctcctccctcccaatgcaca 186467
to top
>gb|AY118908.1| Drosophila melanogaster LD20162 full insert cDNA
          Length = 1505

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 380 atgtccagctccagctcctc 399
           ||||||||||||||||||||
Sbjct: 685 atgtccagctccagctcctc 666
to top
>ref|NM_164698.1| Drosophila melanogaster CG31633-RA (CG31633), mRNA
          Length = 1438

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 380 atgtccagctccagctcctc 399
           ||||||||||||||||||||
Sbjct: 685 atgtccagctccagctcctc 666
to top
>dbj|AK143202.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130307M13 product:Ubiquitin ligase E3
           alpha-II (Fragment), full insert sequence
          Length = 5692

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 caagaggatcctcctcctcc 192
           ||||||||||||||||||||
Sbjct: 854 caagaggatcctcctcctcc 835
to top
>dbj|AK147445.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:M5C1043C02 product:Ubiquitin ligase E3 alpha-II
           (Fragment), full insert sequence
          Length = 7631

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 caagaggatcctcctcctcc 192
           ||||||||||||||||||||
Sbjct: 843 caagaggatcctcctcctcc 824
to top
>gb|AC022313.5| Homo sapiens BAC clone RP11-437G1 from 4, complete sequence
          Length = 183516

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 79     tactatcaaaaatactctcaccat 102
              ||||||||| ||||||||||||||
Sbjct: 125980 tactatcaataatactctcaccat 125957
to top
>gb|AC092230.1|AC092230 Drosophila melanogaster, chromosome 2L, region 26F-27X, BAC clone
              BACR25K24, complete sequence
          Length = 174376

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 380    atgtccagctccagctcctc 399
              ||||||||||||||||||||
Sbjct: 132021 atgtccagctccagctcctc 132040
to top
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 291    agaaatcgacggtttgcaggaaat 314
              |||||||| |||||||||||||||
Sbjct: 253206 agaaatcgccggtttgcaggaaat 253229
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 374      aggtccatgtccagctccagctcctcgt 401
                |||||||||||||| ||||| |||||||
Sbjct: 27855624 aggtccatgtccaggtccaggtcctcgt 27855651
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 384      ccagctccagctcctcgtcg 403
                ||||||||||||||||||||
Sbjct: 40977098 ccagctccagctcctcgtcg 40977117
to top
>gb|AC092635.2| Homo sapiens BAC clone RP11-342E23 from 2, complete sequence
          Length = 125316

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    agagatagtaaaaccttaaa 271
              ||||||||||||||||||||
Sbjct: 119526 agagatagtaaaaccttaaa 119507
to top
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0492G09
          Length = 142239

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   ccagctccagctcctcgtcg 403
             ||||||||||||||||||||
Sbjct: 14028 ccagctccagctcctcgtcg 14047
to top
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0423A12
          Length = 178649

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    ccagctccagctcctcgtcg 403
              ||||||||||||||||||||
Sbjct: 105523 ccagctccagctcctcgtcg 105542
to top
>ref|NM_146078.2| Mus musculus ubiquitin protein ligase E3 component n-recognin 2
           (Ubr2), mRNA
          Length = 7511

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 caagaggatcctcctcctcc 192
           ||||||||||||||||||||
Sbjct: 668 caagaggatcctcctcctcc 649
to top
>dbj|AK122254.2| Mus musculus mRNA for mKIAA0349 protein
          Length = 6521

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 caagaggatcctcctcctcc 192
           ||||||||||||||||||||
Sbjct: 801 caagaggatcctcctcctcc 782
to top
>dbj|AK111704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013E24, full
           insert sequence
          Length = 1983

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 374 aggtccatgtccagctccagctcctcgt 401
           |||||||||||||| ||||| |||||||
Sbjct: 975 aggtccatgtccaggtccaggtcctcgt 948
to top
>dbj|AK072640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133P13, full
           insert sequence
          Length = 3055

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 ccagctccagctcctcgtcg 403
           ||||||||||||||||||||
Sbjct: 210 ccagctccagctcctcgtcg 229
to top
>dbj|AK066698.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073H18, full
           insert sequence
          Length = 3884

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 ccagctccagctcctcgtcg 403
           ||||||||||||||||||||
Sbjct: 230 ccagctccagctcctcgtcg 249
to top
>gb|AE003614.4| Drosophila melanogaster chromosome 2L, section 23 of 83 of the complete
              sequence
          Length = 259718

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 380    atgtccagctccagctcctc 399
              ||||||||||||||||||||
Sbjct: 158577 atgtccagctccagctcctc 158596
to top
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 291     agaaatcgacggtttgcaggaaat 314
               |||||||| |||||||||||||||
Sbjct: 1706272 agaaatcgccggtttgcaggaaat 1706249
to top
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 384    ccagctccagctcctcgtcg 403
              ||||||||||||||||||||
Sbjct: 765574 ccagctccagctcctcgtcg 765555
to top
>gb|AC004301.1|AC004301 Drosophila melanogaster DNA sequence (P1 DS07134 (D192)), complete
             sequence
          Length = 68620

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   atgtccagctccagctcctc 399
             ||||||||||||||||||||
Sbjct: 20770 atgtccagctccagctcctc 20789
to top
>gb|BC075642.1| Mus musculus ubiquitin protein ligase E3 component n-recognin 2,
           mRNA (cDNA clone MGC:93015 IMAGE:30544183), complete cds
          Length = 7511

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 caagaggatcctcctcctcc 192
           ||||||||||||||||||||
Sbjct: 668 caagaggatcctcctcctcc 649


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,507,815
Number of Sequences: 3902068
Number of extensions: 4507815
Number of successful extensions: 95464
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95082
Number of HSP's gapped (non-prelim): 379
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top