>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -3

Query: 505 GMDGLIINVASMVAGA-VTNPFGDGFYQGEREAPLEAAT-ACPGVYGKGAYPGYAGQLLV 332
           G+DG+ I  AS   GA +  P G+    G   AP  A     PG  G+G  PG AG    
Sbjct: 115 GIDGVAIQFASAAGGACIQCPAGEAGPAGAPGAPGPAGPDGQPGADGQGGAPGPAGPEGP 174

Query: 331 DGATGASYNAHGAHG 287
            G  GA   A GA G
Sbjct: 175 AGDAGAP-GAPGAPG 188

>PRDM1_HUMAN (O75626) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1) (Positive regulatory
           domain I-binding factor 1) (PRDI-binding factor 1)
           (PRDI-BF1)
          Length = 789

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 24/65 (36%), Positives = 28/65 (43%)
 Frame = -3

Query: 463 GAVTNPFGDGFYQGEREAPLEAATACPGVYGKGAYPGYAGQLLVDGATGASYNAHGAHGR 284
           G   +P G G    E         A  G  G G+YPGYA    +  A   SYNAH     
Sbjct: 321 GNTVSPVGPG--SQEHRDSYAYLNASYGTEGLGSYPGYAPLPHLPPAFIPSYNAHYP--- 375

Query: 283 KYLLP 269
           K+LLP
Sbjct: 376 KFLLP 380

>NKX25_HUMAN (P52952) Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)|
           (Cardiac-specific homeobox) (Homeobox protein CSX)
          Length = 324

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 336 SSWPAYPGYAPLPYTPGHAVAASSGASRSP 425
           +++PAYPGY     +PG++  A+  A  SP
Sbjct: 251 NAYPAYPGYGGAACSPGYSCTAAYPAGPSP 280

>LAS17_YEAST (Q12446) Proline-rich protein LAS17|
          Length = 633

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 339 SWPAYPG-YAPLPYTPGHAVAASSGASRSPW*NPSPNGLVTAPATMLAT 482
           S P  P  +APLP  P H     + A   P  NP P  +   P+T  AT
Sbjct: 238 SLPPLPNQFAPLPDPPQHNSPPQNNAPSQPQSNPFPFPIPEIPSTQSAT 286

>PRDM1_MOUSE (Q60636) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1)
          Length = 856

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -3

Query: 382 GVYGKGAYPGYAGQLLVDGATGASYNAHGAHGRKYLLP 269
           G  G G+YPGYA    +  A   SYNAH     K+LLP
Sbjct: 414 GSEGLGSYPGYAPAPHLPPAFIPSYNAHYP---KFLLP 448

>LON3_CAEEL (Q23628) Cuticle collagen lon-3 precursor|
          Length = 324

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = -3

Query: 463 GAVTNPFGDGFYQGEREAP----LEAATACPGVYGKGAYPGYAGQLLVDGATGASYNAHG 296
           G  T P G    QG + AP    +  A   PG  G+   PG  G++   GA G    A G
Sbjct: 163 GCFTCPQGLPGPQGSQGAPGIRGMRGARGQPGYPGRDGQPGMPGEMGPTGAPGDD-GAPG 221

Query: 295 AHGRK 281
           A G K
Sbjct: 222 ASGMK 226

>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -3

Query: 469 VAGAV--TNPFGDGFYQGEREAPLEAATACPGVYGKGAYPGYAGQLLVDGATGASYNAHG 296
           V GAV    P G     GER      A   PG  G+   PG  G++   G  GA   AHG
Sbjct: 626 VVGAVGTAGPSGPSGLPGER-----GAAGIPGGKGEKGEPGLRGEIGNPGRDGAR-GAHG 679

Query: 295 AHG 287
           A G
Sbjct: 680 AVG 682

>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 508 RGMDGLIINVASMVAGAVTNPFGDGFYQGEREAPLEAAT-ACPGVYGKGAYPGYAGQLLV 332
           RG  GL  + A   AG    P G+    GE  AP +      PG  G+   PG AG    
Sbjct: 268 RGFSGL--DGAKGDAGPA-GPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGN 324

Query: 331 DGATGAS 311
           DGATGA+
Sbjct: 325 DGATGAA 331

>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -3

Query: 466 AGAVTNPFGDGFYQGEREAPLEAATACPGVYGKGAYPGYAGQLLVDGATGA 314
           AG   NP  DG      +   + AT  PG+ G   +PG  G     G +GA
Sbjct: 371 AGPAGNPGADG------QPGAKGATGAPGIAGAPGFPGARGPSGPQGPSGA 415

>GRP1_HORVU (P17816) Glycine-rich cell wall structural protein precursor|
          Length = 200

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = -3

Query: 442 GDGFYQGEREAPLEAATACPGVYGKGAYPGYAGQLLVDGATGASYNAHGAHG 287
           G G+  G    P        G  G G YPG+ G+       G  Y+ HG  G
Sbjct: 79  GGGYGGGGGGYPGHGGEGGGGYGGGGGYPGHGGEGGGGYGGGGGYHGHGGEG 130

>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 508 RGMDGLIINVASMVAGAVTNPFGDGFYQGEREAPLEAAT-ACPGVYGKGAYPGYAGQLLV 332
           RG  GL  + A   AG    P G+    GE  AP +      PG  G+   PG AG    
Sbjct: 264 RGFSGL--DGAKGDAGPA-GPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGN 320

Query: 331 DGATGAS 311
           DGATGA+
Sbjct: 321 DGATGAA 327


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,361,651
Number of Sequences: 219361
Number of extensions: 1056294
Number of successful extensions: 3701
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3678
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)