| Clone Name | rbaet100a12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY309494.1| Triticum aestivum glyoxysomal malate dehydrogenase mRNA, partial cds Length = 989 Score = 357 bits (180), Expect = 2e-95 Identities = 233/251 (92%) Strand = Plus / Minus Query: 212 tgtataggtcggggacggttcgttcgtacggtctcacttgttcatgaacgacacgccctt 271 ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| Sbjct: 772 tgtataggtcggggacggtccattcgtacgatctcacttgttcatgaacgacacgccctt 713 Query: 272 ctgaatgctctcgctcagctccttcttcgccttctccaggccagccctctcgaagtcatt 331 || ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 712 ctcaatgctctcgctcagctccttcttcgccttctccaggccggccctctcaaagtcatt 653 Query: 332 cagcggcccaagagggaggatctcctcggctccaccgcgacctaacctcactttcgatgc 391 || |||||||||||||| |||| ||||||||||| |||||||||||||| |||||||| Sbjct: 652 caatggcccaagagggagaatcttttcggctccaccacgacctaacctcaccttcgatgc 593 Query: 392 gaagaacgacagctctgtcacctcagatgcancatatgaacactccacgatgccagcatc 451 |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 592 gaagaacggcagctctgtcacctcagatgcgacgtatgaacactccacgatgccagcatc 533 Query: 452 accgcgcattc 462 |||||||||| Sbjct: 532 tccgcgcattc 522 Score = 167 bits (84), Expect = 4e-38 Identities = 177/207 (85%), Gaps = 22/207 (10%) Strand = Plus / Minus Query: 2 aggctgtaaacatgttcggtccagctattcacaagaatatatgttcttgtcta------- 54 |||||||||||||||||||||||||||||||||| | |||| ||||||||||| Sbjct: 966 aggctgtaaacatgttcggtccagctattcacaaaagtatacgttcttgtctagtacgag 907 Query: 55 --catgatttatattccacgatcggggaaaaggctcagtgcagctaaaggtgtagtacta 112 ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 906 tacatgatttatattccacgacgggggaaaaggctcagtgcagctaaagg---agtacta 850 Query: 113 gtactgtcttgcacatgca-gagtggctttacaggtcacaggtattggagcactatatca 171 ||||||||||||||||||| | |||||||| ||||||||||||||||||||| Sbjct: 849 gtactgtcttgcacatgcaggggtggcttt-------acaggtattggagcactatat-- 799 Query: 172 cactcgttctttagtctttgcaaatct 198 ||||| |||||||||||||||| |||| Sbjct: 798 cactctttctttagtctttgcatatct 772
>ref|NM_194083.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1352 Score = 172 bits (87), Expect = 6e-40 Identities = 185/218 (84%) Strand = Plus / Minus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||||||||| | |||||||||||||||||| ||||||| ||||| ||| Sbjct: 1129 ctcacttgttcatgaaatcgatgcccttctgaatgctctccatcagctctttctttgcca 1070 Query: 304 tctccaggccagccctctcgaagtcattcagcggcccaagagggaggatctcctcggctc 363 |||||| |||||| ||||| || ||||||| |||||| |||||||| | ||| ||||||| Sbjct: 1069 tctccaagccagctctctcaaaatcattcaacggccccagagggagaacctcttcggctc 1010 Query: 364 caccgcgacctaacctcactttcgatgcgaagaacgacagctctgtcacctcagatgcan 423 || | ||||||||||||||||| | ||| ||||||| || ||| |||||| |||||||| Sbjct: 1009 cagcacgacctaacctcacttttgttgcaaagaacggcaactcggtcaccgcagatgcaa 950 Query: 424 catatgaacactccacgatgccagcatcaccgcgcatt 461 |||||||||| ||||| | |||||||||||| |||||| Sbjct: 949 catatgaacattccacaacgccagcatcaccacgcatt 912
>dbj|AK104821.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-B02, full insert sequence Length = 1233 Score = 172 bits (87), Expect = 6e-40 Identities = 185/218 (84%) Strand = Plus / Minus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||||||||| | |||||||||||||||||| ||||||| ||||| ||| Sbjct: 1088 ctcacttgttcatgaaatcgatgcccttctgaatgctctccatcagctctttctttgcca 1029 Query: 304 tctccaggccagccctctcgaagtcattcagcggcccaagagggaggatctcctcggctc 363 |||||| |||||| ||||| || ||||||| |||||| |||||||| | ||| ||||||| Sbjct: 1028 tctccaagccagctctctcaaaatcattcaacggccccagagggagaacctcttcggctc 969 Query: 364 caccgcgacctaacctcactttcgatgcgaagaacgacagctctgtcacctcagatgcan 423 || | ||||||||||||||||| | ||| ||||||| || ||| |||||| |||||||| Sbjct: 968 cagcacgacctaacctcacttttgttgcaaagaacggcaactcggtcaccgcagatgcaa 909 Query: 424 catatgaacactccacgatgccagcatcaccgcgcatt 461 |||||||||| ||||| | |||||||||||| |||||| Sbjct: 908 catatgaacattccacaacgccagcatcaccacgcatt 871
>dbj|AK067105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097J20, full insert sequence Length = 1497 Score = 172 bits (87), Expect = 6e-40 Identities = 185/218 (84%) Strand = Plus / Minus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||||||||| | |||||||||||||||||| ||||||| ||||| ||| Sbjct: 1307 ctcacttgttcatgaaatcgatgcccttctgaatgctctccatcagctctttctttgcca 1248 Query: 304 tctccaggccagccctctcgaagtcattcagcggcccaagagggaggatctcctcggctc 363 |||||| |||||| ||||| || ||||||| |||||| |||||||| | ||| ||||||| Sbjct: 1247 tctccaagccagctctctcaaaatcattcaacggccccagagggagaacctcttcggctc 1188 Query: 364 caccgcgacctaacctcactttcgatgcgaagaacgacagctctgtcacctcagatgcan 423 || | ||||||||||||||||| | ||| ||||||| || ||| |||||| |||||||| Sbjct: 1187 cagcacgacctaacctcacttttgttgcaaagaacggcaactcggtcaccgcagatgcaa 1128 Query: 424 catatgaacactccacgatgccagcatcaccgcgcatt 461 |||||||||| ||||| | |||||||||||| |||||| Sbjct: 1127 catatgaacattccacaacgccagcatcaccacgcatt 1090
>dbj|AK064972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B17, full insert sequence Length = 1319 Score = 172 bits (87), Expect = 6e-40 Identities = 185/218 (84%) Strand = Plus / Minus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||||||||| | |||||||||||||||||| ||||||| ||||| ||| Sbjct: 1114 ctcacttgttcatgaaatcgatgcccttctgaatgctctccatcagctctttctttgcca 1055 Query: 304 tctccaggccagccctctcgaagtcattcagcggcccaagagggaggatctcctcggctc 363 |||||| |||||| ||||| || ||||||| |||||| |||||||| | ||| ||||||| Sbjct: 1054 tctccaagccagctctctcaaaatcattcaacggccccagagggagaacctcttcggctc 995 Query: 364 caccgcgacctaacctcactttcgatgcgaagaacgacagctctgtcacctcagatgcan 423 || | ||||||||||||||||| | ||| ||||||| || ||| |||||| |||||||| Sbjct: 994 cagcacgacctaacctcacttttgttgcaaagaacggcaactcggtcaccgcagatgcaa 935 Query: 424 catatgaacactccacgatgccagcatcaccgcgcatt 461 |||||||||| ||||| | |||||||||||| |||||| Sbjct: 934 catatgaacattccacaacgccagcatcaccacgcatt 897
>gb|AY108572.1| Zea mays PCO138884 mRNA sequence Length = 806 Score = 161 bits (81), Expect = 2e-36 Identities = 173/204 (84%) Strand = Plus / Minus Query: 245 tcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcctt 304 ||||||| ||||||| | | |||||||||||||||||||| ||| |||||||| ||| Sbjct: 532 tcacttgctcatgaaagcgatgcccttctgaatgctctcgcccagttccttctttgccgc 473 Query: 305 ctccaggccagccctctcgaagtcattcagcggcccaagagggaggatctcctcggctcc 364 ||||| ||||| |||||||| ||||||| || ||||| |||||||||||||||||||| Sbjct: 472 ttccagaccagctctctcgaaatcattcaaagggccaagcgggaggatctcctcggctcc 413 Query: 365 accgcgacctaacctcactttcgatgcgaagaacgacagctctgtcacctcagatgcanc 424 ||| || || | ||||||||||| ||| ||||||| ||| ||||||||||| |||||| | Sbjct: 412 accacggccaagcctcactttcgttgcaaagaacggcagttctgtcacctcggatgcaac 353 Query: 425 atatgaacactccacgatgccagc 448 |||||| || |||||||| ||||| Sbjct: 352 atatgagcattccacgattccagc 329
>dbj|AK065955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045C09, full insert sequence Length = 1469 Score = 93.7 bits (47), Expect = 5e-16 Identities = 140/171 (81%) Strand = Plus / Minus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||| ||||| | || ||||| || || |||||| |||||||||||| |||| Sbjct: 1140 ctcacttgttgatgaaagcgacccccttttggatactctcggccagctccttcttagcct 1081 Query: 304 tctccaggccagccctctcgaagtcattcagcggcccaagagggaggatctcctcggctc 363 ||||||| ||||| || ||||| ||||||| || ||||| | | |||||||||| | Sbjct: 1080 tctccagtccagctctttcgaattcattcaatggaccaagtgataagatctcctcgatgc 1021 Query: 364 caccgcgacctaacctcactttcgatgcgaagaacgacagctctgtcacct 414 ||| ||||||||||| |||||| ||||| ||||| | |||||||||||||| Sbjct: 1020 cacagcgacctaaccgcactttggatgcaaagaaaggcagctctgtcacct 970
>dbj|AK061793.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F06, full insert sequence Length = 1299 Score = 93.7 bits (47), Expect = 5e-16 Identities = 140/171 (81%) Strand = Plus / Minus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||| ||||| | || ||||| || || |||||| |||||||||||| |||| Sbjct: 1117 ctcacttgttgatgaaagcgacccccttttggatactctcggccagctccttcttagcct 1058 Query: 304 tctccaggccagccctctcgaagtcattcagcggcccaagagggaggatctcctcggctc 363 ||||||| ||||| || ||||| ||||||| || ||||| | | |||||||||| | Sbjct: 1057 tctccagtccagctctttcgaattcattcaatggaccaagtgataagatctcctcgatgc 998 Query: 364 caccgcgacctaacctcactttcgatgcgaagaacgacagctctgtcacct 414 ||| ||||||||||| |||||| ||||| ||||| | |||||||||||||| Sbjct: 997 cacagcgacctaaccgcactttggatgcaaagaaaggcagctctgtcacct 947
>dbj|D85763.1|RIC12 Oryza sativa (japonica cultivar-group) mRNA for glyoxysomal malate dehydrogenase, complete cds Length = 1332 Score = 93.7 bits (47), Expect = 5e-16 Identities = 140/171 (81%) Strand = Plus / Minus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||| ||||| | || ||||| || || |||||| |||||||||||| |||| Sbjct: 1130 ctcacttgttgatgaaagcgacccccttttggatactctcggccagctccttcttagcct 1071 Query: 304 tctccaggccagccctctcgaagtcattcagcggcccaagagggaggatctcctcggctc 363 ||||||| ||||| || ||||| ||||||| || ||||| | | |||||||||| | Sbjct: 1070 tctccagtccagctctttcgaattcattcaatggaccaagtgataagatctcctcgatgc 1011 Query: 364 caccgcgacctaacctcactttcgatgcgaagaacgacagctctgtcacct 414 ||| ||||||||||| |||||| ||||| ||||| | |||||||||||||| Sbjct: 1010 cacagcgacctaaccgcactttggatgcaaagaaaggcagctctgtcacct 960
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Plus Query: 317 cctctcgaagtcattcagcggcccaagagggaggatctcctcggctccaccgcgacctaa 376 |||||| || ||||||| |||||| |||||||| | ||| ||||||||| | |||||||| Sbjct: 31782504 cctctcaaaatcattcaacggccccagagggagaacctcttcggctccagcacgacctaa 31782563 Query: 377 cctcactttcgatgcgaagaacgacagctctgtcacct 414 ||||||||| | ||| ||||||| || ||| ||||||| Sbjct: 31782564 cctcacttttgttgcaaagaacggcaactcggtcacct 31782601 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||||||||| | |||||||||||||||||| ||||||| ||||| ||| Sbjct: 31782323 ctcacttgttcatgaaatcgatgcccttctgaatgctctccatcagctctttctttgcca 31782382 Query: 304 tctccaggccagc 316 |||||| |||||| Sbjct: 31782383 tctccaagccagc 31782395 Score = 56.0 bits (28), Expect = 1e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 415 cagatgcancatatgaacactccacgatgccagcatcaccgcgcatt 461 |||||||| |||||||||| ||||| | |||||||||||| |||||| Sbjct: 31782685 cagatgcaacatatgaacattccacaacgccagcatcaccacgcatt 31782731
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Plus Query: 317 cctctcgaagtcattcagcggcccaagagggaggatctcctcggctccaccgcgacctaa 376 |||||| || ||||||| |||||| |||||||| | ||| ||||||||| | |||||||| Sbjct: 107730 cctctcaaaatcattcaacggccccagagggagaacctcttcggctccagcacgacctaa 107789 Query: 377 cctcactttcgatgcgaagaacgacagctctgtcacct 414 ||||||||| | ||| ||||||| || ||| ||||||| Sbjct: 107790 cctcacttttgttgcaaagaacggcaactcggtcacct 107827 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||||||||| | |||||||||||||||||| ||||||| ||||| ||| Sbjct: 107549 ctcacttgttcatgaaatcgatgcccttctgaatgctctccatcagctctttctttgcca 107608 Query: 304 tctccaggccagc 316 |||||| |||||| Sbjct: 107609 tctccaagccagc 107621 Score = 56.0 bits (28), Expect = 1e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 415 cagatgcancatatgaacactccacgatgccagcatcaccgcgcatt 461 |||||||| |||||||||| ||||| | |||||||||||| |||||| Sbjct: 107911 cagatgcaacatatgaacattccacaacgccagcatcaccacgcatt 107957
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Plus Query: 317 cctctcgaagtcattcagcggcccaagagggaggatctcctcggctccaccgcgacctaa 376 |||||| || ||||||| |||||| |||||||| | ||| ||||||||| | |||||||| Sbjct: 31873020 cctctcaaaatcattcaacggccccagagggagaacctcttcggctccagcacgacctaa 31873079 Query: 377 cctcactttcgatgcgaagaacgacagctctgtcacct 414 ||||||||| | ||| ||||||| || ||| ||||||| Sbjct: 31873080 cctcacttttgttgcaaagaacggcaactcggtcacct 31873117 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||||||||| | |||||||||||||||||| ||||||| ||||| ||| Sbjct: 31872839 ctcacttgttcatgaaatcgatgcccttctgaatgctctccatcagctctttctttgcca 31872898 Query: 304 tctccaggccagc 316 |||||| |||||| Sbjct: 31872899 tctccaagccagc 31872911 Score = 56.0 bits (28), Expect = 1e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 415 cagatgcancatatgaacactccacgatgccagcatcaccgcgcatt 461 |||||||| |||||||||| ||||| | |||||||||||| |||||| Sbjct: 31873201 cagatgcaacatatgaacattccacaacgccagcatcaccacgcatt 31873247
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 350 gatctcctcggctccaccgcgacctaacctcactttcgatgcgaagaacgacagctctgt 409 |||||||||| |||| ||||||||||| |||||| ||||| ||||| | ||||||||| Sbjct: 27131877 gatctcctcgatgccacagcgacctaaccgcactttggatgcaaagaaaggcagctctgt 27131936 Query: 410 cacct 414 ||||| Sbjct: 27131937 cacct 27131941 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Plus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||| ||||| | || ||||| || || |||||| |||||||||||| |||| Sbjct: 27131115 ctcacttgttgatgaaagcgacccccttttggatactctcggccagctccttcttagcct 27131174 Query: 304 tctccaggccagc 316 ||||||| ||||| Sbjct: 27131175 tctccagtccagc 27131187
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 350 gatctcctcggctccaccgcgacctaacctcactttcgatgcgaagaacgacagctctgt 409 |||||||||| |||| ||||||||||| |||||| ||||| ||||| | ||||||||| Sbjct: 27057474 gatctcctcgatgccacagcgacctaaccgcactttggatgcaaagaaaggcagctctgt 27057533 Query: 410 cacct 414 ||||| Sbjct: 27057534 cacct 27057538 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Plus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||| ||||| | || ||||| || || |||||| |||||||||||| |||| Sbjct: 27056712 ctcacttgttgatgaaagcgacccccttttggatactctcggccagctccttcttagcct 27056771 Query: 304 tctccaggccagc 316 ||||||| ||||| Sbjct: 27056772 tctccagtccagc 27056784
>emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131300 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 350 gatctcctcggctccaccgcgacctaacctcactttcgatgcgaagaacgacagctctgt 409 |||||||||| |||| ||||||||||| |||||| ||||| ||||| | ||||||||| Sbjct: 24360 gatctcctcgatgccacagcgacctaaccgcactttggatgcaaagaaaggcagctctgt 24301 Query: 410 cacct 414 ||||| Sbjct: 24300 cacct 24296 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||| ||||| | || ||||| || || |||||| |||||||||||| |||| Sbjct: 25122 ctcacttgttgatgaaagcgacccccttttggatactctcggccagctccttcttagcct 25063 Query: 304 tctccaggccagc 316 ||||||| ||||| Sbjct: 25062 tctccagtccagc 25050
>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145816 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 350 gatctcctcggctccaccgcgacctaacctcactttcgatgcgaagaacgacagctctgt 409 |||||||||| |||| ||||||||||| |||||| ||||| ||||| | ||||||||| Sbjct: 70773 gatctcctcgatgccacagcgacctaaccgcactttggatgcaaagaaaggcagctctgt 70832 Query: 410 cacct 414 ||||| Sbjct: 70833 cacct 70837 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Plus Query: 244 ctcacttgttcatgaacgacacgcccttctgaatgctctcgctcagctccttcttcgcct 303 |||||||||| ||||| | || ||||| || || |||||| |||||||||||| |||| Sbjct: 70011 ctcacttgttgatgaaagcgacccccttttggatactctcggccagctccttcttagcct 70070 Query: 304 tctccaggccagc 316 ||||||| ||||| Sbjct: 70071 tctccagtccagc 70083
>gb|AY106202.1| Zea mays PCO104294 mRNA sequence Length = 1539 Score = 56.0 bits (28), Expect = 1e-04 Identities = 85/104 (81%) Strand = Plus / Minus Query: 255 atgaacgacacgcccttctgaatgctctcgctcagctccttcttcgccttctccaggcca 314 ||||| || ||||||||||| || ||||| |||||| ||||| ||||||||||| ||| Sbjct: 1266 atgaaagagacgcccttctggatactctccgccagctctttctttgccttctccagacca 1207 Query: 315 gccctctcgaagtcattcagcggcccaagagggaggatctcctc 358 | |||||||| ||||| | || ||||| || ||||||||||| Sbjct: 1206 gatctctcgaactcatttaatggtccaagtggtaggatctcctc 1163
>ref|NM_120007.2| Arabidopsis thaliana unknown protein AT4G38460 mRNA, complete cds Length = 1275 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 945 agctccttcttcgccttctcc 925
>gb|AY633750.1| Tobacco leaf curl virus isolate Kamphaensaen coat protein gene, complete cds Length = 771 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 ctttcgatgcgaagaacgaca 402 ||||||||||||||||||||| Sbjct: 227 ctttcgatgcgaagaacgaca 247
>gb|DQ481665.1| Takifugu rubripes HoxBa gene cluster, complete sequence Length = 294716 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 36 gaatatatgttcttgtctacatgatttat 64 |||||||||| ||||||||||||||||| Sbjct: 145848 gaatatatgtctttgtctacatgatttat 145876
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 atatgtattgtattgtatagg 219 ||||||||||||||||||||| Sbjct: 726263 atatgtattgtattgtatagg 726243
>gb|AY194362.1| Vitis vinifera NAD-malate dehydrogenase (Mdhg) mRNA, partial cds Length = 359 Score = 42.1 bits (21), Expect = 1.6 Identities = 72/89 (80%) Strand = Plus / Minus Query: 287 cagctccttcttcgccttctccaggccagccctctcgaagtcattcagcggcccaagagg 346 |||||||||||| || ||||||| ||| ||||||| | |||||||| || ||||| | Sbjct: 162 cagctccttctttgctttctccaacccaaccctctcatactcattcagaggtccaagtga 103 Query: 347 gaggatctcctcggctccaccgcgaccta 375 | ||||||||| ||||||| ||| |||| Sbjct: 102 gtagatctcctctgctccactgcggccta 74
>gb|AC158750.5| Mus musculus chromosome 15, clone RP24-222C16, complete sequence Length = 128868 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 tttagtctttgcaaatctata 201 ||||||||||||||||||||| Sbjct: 50638 tttagtctttgcaaatctata 50618
>emb|BX465853.12| Zebrafish DNA sequence from clone DKEY-18F23 in linkage group 23, complete sequence Length = 220945 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 gcacatgcagagtggctttac 143 ||||||||||||||||||||| Sbjct: 714 gcacatgcagagtggctttac 734
>emb|X63015.1|TYLCBCG Tomato yellow leaf curl Thailand virus-[1] complete genome (TYLCV-TH A-DNA) Length = 2743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 ctttcgatgcgaagaacgaca 402 ||||||||||||||||||||| Sbjct: 668 ctttcgatgcgaagaacgaca 688
>gb|AF339725.1| Arabidopsis thaliana putative geranylgeranyl pyrophosphate synthase-related protein (At4g38460) mRNA, complete cds Length = 1031 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 881 agctccttcttcgccttctcc 861
>gb|AF326906.1| Arabidopsis thaliana putative geranylgeranyl pyrophosphate synthase-related protein (At4g38460) mRNA, complete cds Length = 1140 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 919 agctccttcttcgccttctcc 899
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 ggtcggggacggttcgttcgt 238 ||||||||||||||||||||| Sbjct: 83400 ggtcggggacggttcgttcgt 83420
>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89 Length = 199789 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 104816 agctccttcttcgccttctcc 104796
>emb|AL035539.1|ATF22I13 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project) Length = 93760 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 63858 agctccttcttcgccttctcc 63838
>emb|AJ514321.1|BEG514321 Tomato geminivirus AV2 gene, AV1 gene and AC1 gene (partial), isolate Y73 Length = 1409 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 ctttcgatgcgaagaacgaca 402 ||||||||||||||||||||| Sbjct: 776 ctttcgatgcgaagaacgaca 796
>emb|AJ495812.1|TGE495812 Tomato yellow leaf curl Thailand virus-[Y72] complete genome, isolate Y72 Length = 2748 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 ctttcgatgcgaagaacgaca 402 ||||||||||||||||||||| Sbjct: 521 ctttcgatgcgaagaacgaca 541
>emb|AJ420319.1|SLE420319 Squash leaf curl Yunnan virus complete genome, isolate Y23 Length = 2714 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 ctttcgatgcgaagaacgaca 402 ||||||||||||||||||||| Sbjct: 521 ctttcgatgcgaagaacgaca 541
>emb|BX546466.6| Zebrafish DNA sequence from clone DKEY-43N10 in linkage group 23, complete sequence Length = 109069 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 gcacatgcagagtggctttac 143 ||||||||||||||||||||| Sbjct: 107783 gcacatgcagagtggctttac 107803
>emb|BX323077.15| Zebrafish DNA sequence from clone DKEYP-110E4 in linkage group 14, complete sequence Length = 195732 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 ttgcaaatctatatgtattgtattgtata 217 |||| ||| |||||||||||||||||||| Sbjct: 59563 ttgccaatatatatgtattgtattgtata 59591
>gb|AY057734.1| Arabidopsis thaliana AT4g38460/F20M13_20 mRNA, complete cds Length = 981 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 881 agctccttcttcgccttctcc 861
>gb|AF372915.1|AF372915 Arabidopsis thaliana AT4g38460/F20M13_20 mRNA, complete cds Length = 1124 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 919 agctccttcttcgccttctcc 899
>gb|AF324662.2|AF324662 Arabidopsis thaliana AT4g38460 (AT4g38460/F20M13_20) mRNA, complete cds Length = 1124 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 919 agctccttcttcgccttctcc 899
>emb|BX828032.1|CNS0A30K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH46ZB07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1092 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 913 agctccttcttcgccttctcc 893
>emb|BX826539.1|CNS0A2B5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB37ZB03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 557 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 226 agctccttcttcgccttctcc 206
>gb|AF141922.1| Tomato yellow leaf curl Thailand virus-[2] segment A, complete sequence Length = 2751 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 ctttcgatgcgaagaacgaca 402 ||||||||||||||||||||| Sbjct: 659 ctttcgatgcgaagaacgaca 679
>gb|AY086829.1| Arabidopsis thaliana clone 28204 mRNA, complete sequence Length = 1240 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 945 agctccttcttcgccttctcc 925
>gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence Length = 107740 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 60711 agctccttcttcgccttctcc 60731
>gb|AC147533.3| Macropus eugenii clone ME_KBa-311C4, complete sequence Length = 153357 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 atatgtattgtattgtatagg 219 ||||||||||||||||||||| Sbjct: 29269 atatgtattgtattgtatagg 29249
>gb|AC161272.3| Mus musculus BAC clone RP23-56M19 from chromosome 9, complete sequence Length = 192003 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 ctttgcaaatctatatgtatt 207 ||||||||||||||||||||| Sbjct: 16253 ctttgcaaatctatatgtatt 16273
>emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, BAC clone F20M13 (ESSA project) Length = 91938 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 5757 agctccttcttcgccttctcc 5737
>gb|L40577.1|ATHGGPSRP Arabidopsis thaliana geranylgeranyl pyrophosphate synthase-related protein mRNA, complete cds Length = 1109 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 agctccttcttcgccttctcc 308 ||||||||||||||||||||| Sbjct: 907 agctccttcttcgccttctcc 887
>gb|AE001393.1| Plasmodium falciparum 3D7 chromosome 2 section 30 of 73 of the complete sequence Length = 15148 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ctatatgtattgtattgtat 216 |||||||||||||||||||| Sbjct: 507 ctatatgtattgtattgtat 488
>gb|AC105767.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B11, complete sequence Length = 103615 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 cagcggcccaagagggagga 351 |||||||||||||||||||| Sbjct: 40777 cagcggcccaagagggagga 40796
>gb|AC136218.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0039A21, complete sequence Length = 139074 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 cagcggcccaagagggagga 351 |||||||||||||||||||| Sbjct: 126850 cagcggcccaagagggagga 126869
>gb|AC009353.9| Drosophila melanogaster clone BACR32F22, complete sequence Length = 157370 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tatatgtattgtattgtata 217 |||||||||||||||||||| Sbjct: 87862 tatatgtattgtattgtata 87881
>gb|AC160564.2| Pan troglodytes BAC clone CH251-542C24 from chromosome 5, complete sequence Length = 177047 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ggcccaagagggaggatctc 355 |||||||||||||||||||| Sbjct: 104261 ggcccaagagggaggatctc 104242
>emb|AL023653.1|HS753P9 Human DNA sequence from clone RP4-753P9 on chromosome Xq25-26.1 Contains the XPNPEP2 gene for X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound and the CXorf9 gene for chromosome X open reading frame 9, complete sequence Length = 116561 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tatatgtattgtattgtata 217 |||||||||||||||||||| Sbjct: 100235 tatatgtattgtattgtata 100216 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tatatgtattgtattgtata 217 |||||||||||||||||||| Sbjct: 100217 tatatgtattgtattgtata 100198
>gb|AC108480.3| Drosophila melanogaster X BAC RP98-2A13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175996 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 atatgtattgtattgtatag 218 |||||||||||||||||||| Sbjct: 121462 atatgtattgtattgtatag 121481
>gb|AF195953.2| Homo sapiens membrane-bound aminopeptidase P (XNPEP2) gene, complete cds Length = 206618 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tatatgtattgtattgtata 217 |||||||||||||||||||| Sbjct: 190268 tatatgtattgtattgtata 190249 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tatatgtattgtattgtata 217 |||||||||||||||||||| Sbjct: 190250 tatatgtattgtattgtata 190231
>gb|AC010404.5| Homo sapiens chromosome 4 clone CTD-2149O24, complete sequence Length = 142694 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tatatgtattgtattgtata 217 |||||||||||||||||||| Sbjct: 3701 tatatgtattgtattgtata 3720
>ref|XM_393227.2| PREDICTED: Apis mellifera similar to GA17495-PA (LOC409729), mRNA Length = 7938 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 gctcagctccttcttcgccttctc 307 |||||||||||||||| ||||||| Sbjct: 3504 gctcagctccttcttctccttctc 3481
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 cagcggcccaagagggagga 351 |||||||||||||||||||| Sbjct: 18159595 cagcggcccaagagggagga 18159614
>gb|AC093722.2| Homo sapiens BAC clone CTD-2012I17 from 4, complete sequence Length = 163353 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tatatgtattgtattgtata 217 |||||||||||||||||||| Sbjct: 89148 tatatgtattgtattgtata 89129
>emb|AL845365.9| Zebrafish DNA sequence from clone DKEY-150H13 in linkage group 20, complete sequence Length = 212942 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tatatgtattgtattgtata 217 |||||||||||||||||||| Sbjct: 186696 tatatgtattgtattgtata 186677
>gb|AE003786.5| Drosophila melanogaster chromosome 2R, section 3 of 73 of the complete sequence Length = 280239 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tatatgtattgtattgtata 217 |||||||||||||||||||| Sbjct: 43267 tatatgtattgtattgtata 43286
>gb|AE003427.3| Drosophila melanogaster chromosome X, section 11 of 74 of the complete sequence Length = 213230 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 atatgtattgtattgtatag 218 |||||||||||||||||||| Sbjct: 82954 atatgtattgtattgtatag 82935
>gb|AC164420.4| Mus musculus chromosome 8, clone RP24-388L13, complete sequence Length = 174120 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cttgtctacatgatttatat 66 |||||||||||||||||||| Sbjct: 41825 cttgtctacatgatttatat 41844
>gb|AC140446.5| Mus musculus BAC clone RP24-114J11 from chromosome 8, complete sequence Length = 152392 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cttgtctacatgatttatat 66 |||||||||||||||||||| Sbjct: 110107 cttgtctacatgatttatat 110126
>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence Length = 182415 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tccttcttcgccttctccag 310 |||||||||||||||||||| Sbjct: 98220 tccttcttcgccttctccag 98201
>emb|BX000481.5| Zebrafish DNA sequence from clone CH211-13A4 in linkage group 5, complete sequence Length = 163926 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ttcttgtctacatgatttat 64 |||||||||||||||||||| Sbjct: 99582 ttcttgtctacatgatttat 99601
>emb|AL954699.4| Zebrafish DNA sequence from clone CH211-264H3 in linkage group 5, complete sequence Length = 143013 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ttcttgtctacatgatttat 64 |||||||||||||||||||| Sbjct: 97350 ttcttgtctacatgatttat 97369 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,469,355 Number of Sequences: 3902068 Number of extensions: 3469355 Number of successful extensions: 78289 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78002 Number of HSP's gapped (non-prelim): 274 length of query: 462 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 440 effective length of database: 17,147,199,772 effective search space: 7544767899680 effective search space used: 7544767899680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)