ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet100a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473024.1| Oryza sativa (japonica cultivar-group), predic... 64 4e-07
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
3emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4,... 64 4e-07
4emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 64 4e-07
5emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chro... 44 0.36
6emb|AL121872.12|HSB348B13 Human DNA sequence from clone RP13-348... 44 0.36
7gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome 42 1.4
8gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome 42 1.4
9gb|AE006633.1| Streptococcus pyogenes M1 GAS, section 162 of 167... 42 1.4
10gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome 42 1.4
11gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome 42 1.4
12gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome 42 1.4
13gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome 42 1.4
14ref|XM_797057.1| Trypanosoma cruzi strain CL Brener dynein heavy... 42 1.4
15gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome 42 1.4
16ref|XM_500347.1| Yarrowia lipolytica CLIB122, YALI0B00528g predi... 42 1.4
17gb|AY338490.1| Homo sapiens glutathione reductase (GSR) gene, co... 42 1.4
18gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.4
19gb|AE010120.1| Streptococcus pyogenes strain MGAS8232, section 1... 42 1.4
20gb|AC009314.4| Homo sapiens BAC clone RP11-465K4 from 8, complet... 42 1.4
21gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome 42 1.4
22dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome 42 1.4
23gb|AF228703.1|AF228703 Homo sapiens mitochondrial glutathione re... 42 1.4
24emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 42 1.4
25gb|AC167814.4| Mus musculus BAC clone RP24-248O12 from chromosom... 40 5.7
26gb|AC005217.1| Homo sapiens chromosome 5, P1 clone 1047D6 (LBNL ... 40 5.7
27gb|AC024753.1| Caenorhabditis elegans cosmid Y23H5B, complete se... 40 5.7
28gb|AC099728.6| Mus musculus chromosome 7, clone RP23-417I5, comp... 40 5.7
29emb|CR956392.5| M.truncatula DNA sequence from clone MTH2-52P12 ... 40 5.7
30gb|AC101969.6| Mus musculus chromosome 17, clone RP24-259G8, com... 40 5.7
31gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromo... 40 5.7
32gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16, comp... 40 5.7
33dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
34dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
35gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 5.7
36emb|CT027993.6| Mouse DNA sequence from clone RP24-82E21 on chro... 40 5.7
37dbj|AP006402.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.7
38gb|AC171209.1| Mus musculus BAC clone RP23-105E1 from chromosome... 40 5.7
39emb|AL807784.11| Mouse DNA sequence from clone RP23-448C18 on ch... 40 5.7 
>ref|XM_473024.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1146

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 380  ctcgaaggcggcgacggccatgatccagacggcgacgaagacgc 423
            |||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 1116 ctcgaacgcggcgacggcgatgacccagacggcgacgaagacgc 1073
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 380      ctcgaaggcggcgacggccatgatccagacggcgacgaagacgc 423
                |||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 24744066 ctcgaacgcggcgacggcgatgacccagacggcgacgaagacgc 24744023
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>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
              complete sequence
          Length = 133856

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                          
Query: 380    ctcgaaggcggcgacggccatgatccagacggcgacgaagacgc 423
              |||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 133589 ctcgaacgcggcgacggcgatgacccagacggcgacgaagacgc 133546
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
            complete sequence
          Length = 170765

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 380  ctcgaaggcggcgacggccatgatccagacggcgacgaagacgc 423
            |||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 5782 ctcgaacgcggcgacggcgatgacccagacggcgacgaagacgc 5739
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>emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chromosome 1 Contains part
            of the EPHB2 gene for EphB2 and a novel gene, complete
            sequence
          Length = 126589

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 326  ggatgatgggtgacggatgggt 347
            ||||||||||||||||||||||
Sbjct: 3377 ggatgatgggtgacggatgggt 3398
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>emb|AL121872.12|HSB348B13 Human DNA sequence from clone RP13-348B13 on chromosome X Contains a
             pseudogene similar to part of SRI (sorcin) and a novel
             gene, complete sequence
          Length = 142689

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 21    acttgagcaatctaccaaagca 42
             ||||||||||||||||||||||
Sbjct: 35732 acttgagcaatctaccaaagca 35711
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>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome
          Length = 1838554

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 340     ggatgggtcagtcgtcgtcgt 360
               |||||||||||||||||||||
Sbjct: 1783266 ggatgggtcagtcgtcgtcgt 1783246
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>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome
          Length = 1899877

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 340     ggatgggtcagtcgtcgtcgt 360
               |||||||||||||||||||||
Sbjct: 1844103 ggatgggtcagtcgtcgtcgt 1844083
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>gb|AE006633.1| Streptococcus pyogenes M1 GAS, section 162 of 167 of the complete
             genome
          Length = 14098

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 340   ggatgggtcagtcgtcgtcgt 360
             |||||||||||||||||||||
Sbjct: 13834 ggatgggtcagtcgtcgtcgt 13814
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>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome
          Length = 1937111

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 340     ggatgggtcagtcgtcgtcgt 360
               |||||||||||||||||||||
Sbjct: 1886928 ggatgggtcagtcgtcgtcgt 1886908
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>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome
          Length = 1860355

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 340     ggatgggtcagtcgtcgtcgt 360
               |||||||||||||||||||||
Sbjct: 1806475 ggatgggtcagtcgtcgtcgt 1806455
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>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome
          Length = 1928252

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 340     ggatgggtcagtcgtcgtcgt 360
               |||||||||||||||||||||
Sbjct: 1858861 ggatgggtcagtcgtcgtcgt 1858841
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>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome
          Length = 1836467

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 340     ggatgggtcagtcgtcgtcgt 360
               |||||||||||||||||||||
Sbjct: 1782598 ggatgggtcagtcgtcgtcgt 1782578
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>ref|XM_797057.1| Trypanosoma cruzi strain CL Brener dynein heavy chain
           (Tc00.1047053405179.10) partial mRNA
          Length = 1062

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 191 tcctcaaatttcgccatccgcccaa 215
           ||||||||||||| |||||||||||
Sbjct: 451 tcctcaaatttcgtcatccgcccaa 427
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>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome
          Length = 1897573

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 340     ggatgggtcagtcgtcgtcgt 360
               |||||||||||||||||||||
Sbjct: 1831810 ggatgggtcagtcgtcgtcgt 1831790
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>ref|XM_500347.1| Yarrowia lipolytica CLIB122, YALI0B00528g predicted mRNA
          Length = 2781

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 349 agtcgtcgtcgtcctcgtagt 369
           |||||||||||||||||||||
Sbjct: 55  agtcgtcgtcgtcctcgtagt 35
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>gb|AY338490.1| Homo sapiens glutathione reductase (GSR) gene, complete cds
          Length = 50564

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    agaggaagaaaacttgagcaa 30
             |||||||||||||||||||||
Sbjct: 35693 agaggaagaaaacttgagcaa 35673
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 387     gcggcgacggccatgatccag 407
               |||||||||||||||||||||
Sbjct: 3267114 gcggcgacggccatgatccag 3267094
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>gb|AE010120.1| Streptococcus pyogenes strain MGAS8232, section 168 of 173 of the
            complete genome
          Length = 10029

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 340  ggatgggtcagtcgtcgtcgt 360
            |||||||||||||||||||||
Sbjct: 4839 ggatgggtcagtcgtcgtcgt 4819
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>gb|AC009314.4| Homo sapiens BAC clone RP11-465K4 from 8, complete sequence
          Length = 161788

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     agaggaagaaaacttgagcaa 30
              |||||||||||||||||||||
Sbjct: 146198 agaggaagaaaacttgagcaa 146178
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>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome
          Length = 1900521

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 340     ggatgggtcagtcgtcgtcgt 360
               |||||||||||||||||||||
Sbjct: 1846421 ggatgggtcagtcgtcgtcgt 1846401
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>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome
          Length = 1894275

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 340     ggatgggtcagtcgtcgtcgt 360
               |||||||||||||||||||||
Sbjct: 1840206 ggatgggtcagtcgtcgtcgt 1840186
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>gb|AF228703.1|AF228703 Homo sapiens mitochondrial glutathione reductase and cytosolic
             glutathione reductase (GRD1) gene, complete cds,
             alternatively spliced
          Length = 52459

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    agaggaagaaaacttgagcaa 30
             |||||||||||||||||||||
Sbjct: 35311 agaggaagaaaacttgagcaa 35291
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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia
             lipolytica
          Length = 3066374

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 349   agtcgtcgtcgtcctcgtagt 369
             |||||||||||||||||||||
Sbjct: 48458 agtcgtcgtcgtcctcgtagt 48478
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>gb|AC167814.4| Mus musculus BAC clone RP24-248O12 from chromosome 17, complete sequence
          Length = 177174

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    gatagctgctccagattaat 277
              ||||||||||||||||||||
Sbjct: 132447 gatagctgctccagattaat 132466
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>gb|AC005217.1| Homo sapiens chromosome 5, P1 clone 1047D6 (LBNL H20), complete
             sequence
          Length = 85641

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   atcctcaaatttcgccatcc 209
             ||||||||||||||||||||
Sbjct: 28698 atcctcaaatttcgccatcc 28679
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>gb|AC024753.1| Caenorhabditis elegans cosmid Y23H5B, complete sequence
          Length = 69663

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    aatgtacaaatatgaatcag 105
             ||||||||||||||||||||
Sbjct: 45325 aatgtacaaatatgaatcag 45306
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>gb|AC099728.6| Mus musculus chromosome 7, clone RP23-417I5, complete sequence
          Length = 205550

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    tgagcaatctaccaaagcaa 43
             ||||||||||||||||||||
Sbjct: 87314 tgagcaatctaccaaagcaa 87295
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>emb|CR956392.5| M.truncatula DNA sequence from clone MTH2-52P12 on chromosome 3,
             complete sequence
          Length = 115163

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     gtaaaagaggaagaaaactt 24
             ||||||||||||||||||||
Sbjct: 53952 gtaaaagaggaagaaaactt 53933
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>gb|AC101969.6| Mus musculus chromosome 17, clone RP24-259G8, complete sequence
          Length = 219711

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    gatagctgctccagattaat 277
              ||||||||||||||||||||
Sbjct: 138650 gatagctgctccagattaat 138631
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>gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromosome unknown, complete
             sequence
          Length = 240827

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   atcctcaaatttcgccatcc 209
             ||||||||||||||||||||
Sbjct: 22501 atcctcaaatttcgccatcc 22482
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>gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16, complete sequence
          Length = 183378

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    atcctcaaatttcgccatcc 209
              ||||||||||||||||||||
Sbjct: 129211 atcctcaaatttcgccatcc 129230
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 299      cttcatggacggacgcgacg 318
                ||||||||||||||||||||
Sbjct: 16302395 cttcatggacggacgcgacg 16302376
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>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1344_B01
          Length = 170912

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    cttcatggacggacgcgacg 318
              ||||||||||||||||||||
Sbjct: 118911 cttcatggacggacgcgacg 118892
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 362     ctcgtagtagcgcttgaactcgaa 385
               |||||||||||||||| |||||||
Sbjct: 3081722 ctcgtagtagcgcttgtactcgaa 3081745
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>emb|CT027993.6| Mouse DNA sequence from clone RP24-82E21 on chromosome 17, complete
              sequence
          Length = 241014

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    gatagctgctccagattaat 277
              ||||||||||||||||||||
Sbjct: 238581 gatagctgctccagattaat 238562
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>dbj|AP006402.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34J23, TM0284,
            complete sequence
          Length = 92675

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    taaaagaggaagaaaacttg 25
            ||||||||||||||||||||
Sbjct: 2115 taaaagaggaagaaaacttg 2096
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>gb|AC171209.1| Mus musculus BAC clone RP23-105E1 from chromosome 17, complete sequence
          Length = 212184

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    gatagctgctccagattaat 277
              ||||||||||||||||||||
Sbjct: 176100 gatagctgctccagattaat 176081
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>emb|AL807784.11| Mouse DNA sequence from clone RP23-448C18 on chromosome X, complete
             sequence
          Length = 127196

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     taaaagaggaagaaaacttg 25
             ||||||||||||||||||||
Sbjct: 98671 taaaagaggaagaaaacttg 98690


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,115,609
Number of Sequences: 3902068
Number of extensions: 3115609
Number of successful extensions: 62491
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62190
Number of HSP's gapped (non-prelim): 301
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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