| Clone Name | rbaet09h12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B01, full insert sequence Length = 1067 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccgga 402 ||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 837 gctcagttgctggggctgctccggaaggagcccagcgccttgatggctgccgcccgga 780
>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06, complete sequence Length = 127420 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccgga 402 ||||||||||| || |||||||||||||||| |||||||||||||| |||||||||| Sbjct: 90998 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccgcccgga 91055
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccgga 402 ||||||||||| || |||||||||||||||| |||||||||||||| |||||||||| Sbjct: 8906689 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccgcccgga 8906746
>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full insert sequence Length = 1308 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccgga 402 ||||||||||| || |||||||||||||||| |||||||||||||| |||||||||| Sbjct: 950 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccgcccgga 893
>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full insert sequence Length = 1309 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccgga 402 ||||||||||| || |||||||||||||||| |||||||||||||| |||||||||| Sbjct: 944 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccgcccgga 887
>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full insert sequence Length = 1296 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccgga 402 ||||||||||| || |||||||||||||||| |||||||||||||| |||||||||| Sbjct: 938 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccgcccgga 881
>ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 347 tcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccgga 402 ||||||||| || |||||||||||||||| |||||||||||||| |||||||||| Sbjct: 849 tcagttgctggggttgctccggaaggagcccagcgccttgatggctgccgcccgga 794
>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete cds Length = 1268 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccgga 402 |||||| |||||||||||| ||||||||||| ||||||||| Sbjct: 990 tgctcctgaaggagccgagagccttgatggcgcccgcccgga 949
>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete cds Length = 1171 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccgga 402 |||||| |||||||||||| |||||||||||| | ||||||| Sbjct: 937 tgctcctgaaggagccgagggccttgatggccccagcccgga 896
>gb|AY109332.1| Zea mays CL502_5 mRNA sequence Length = 1969 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccgga 402 |||||| |||||||||||| ||||||||||| ||||||||| Sbjct: 1640 tgctcctgaaggagccgagagccttgatggcgcccgcccgga 1599
>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence Length = 1348 Score = 46.1 bits (23), Expect = 0.087 Identities = 29/31 (93%) Strand = Plus / Minus Query: 361 tgctccggaaggagccgagcgccttgatggc 391 |||||| |||||||||||| ||||||||||| Sbjct: 918 tgctcctgaaggagccgagggccttgatggc 888
>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds Length = 1133 Score = 46.1 bits (23), Expect = 0.087 Identities = 29/31 (93%) Strand = Plus / Minus Query: 361 tgctccggaaggagccgagcgccttgatggc 391 |||||| |||||||||||| ||||||||||| Sbjct: 866 tgctcctgaaggagccgagggccttgatggc 836
>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA, complete cds Length = 1283 Score = 46.1 bits (23), Expect = 0.087 Identities = 29/31 (93%) Strand = Plus / Minus Query: 361 tgctccggaaggagccgagcgccttgatggc 391 |||||| |||||||||||| ||||||||||| Sbjct: 939 tgctcctgaaggagccgagggccttgatggc 909
>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds Length = 1328 Score = 46.1 bits (23), Expect = 0.087 Identities = 29/31 (93%) Strand = Plus / Minus Query: 361 tgctccggaaggagccgagcgccttgatggc 391 |||||| |||||||||||| ||||||||||| Sbjct: 962 tgctcctgaaggagccgagggccttgatggc 932
>gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159902 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 190 actcacatgcatgcacagacac 211 |||||||||||||||||||||| Sbjct: 66966 actcacatgcatgcacagacac 66987
>dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA for water channel protein, partial cds Length = 880 Score = 44.1 bits (22), Expect = 0.34 Identities = 28/30 (93%) Strand = Plus / Minus Query: 361 tgctccggaaggagccgagcgccttgatgg 390 |||||| |||||||||||| |||||||||| Sbjct: 538 tgctcctgaaggagccgagggccttgatgg 509
>emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chromosome 11, complete sequence Length = 201673 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 tcacatgcatgcacagacact 212 ||||||||||||||||||||| Sbjct: 42516 tcacatgcatgcacagacact 42536
>gb|AC106834.9| Mus musculus chromosome 19, clone RP24-132H7, complete sequence Length = 177277 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 cacatgcatgcacagacactgaac 216 |||||||||||||| ||||||||| Sbjct: 133853 cacatgcatgcacacacactgaac 133830
>gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, complete sequence Length = 245390 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 cacatgcatgcacagacactgaac 216 |||||||||||||| ||||||||| Sbjct: 46326 cacatgcatgcacacacactgaac 46303
>gb|AC011352.6| Homo sapiens chromosome 5 clone CTC-327F10, complete sequence Length = 166644 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 cacatgcatgcacagacactgaac 216 |||||||||||||| ||||||||| Sbjct: 86180 cacatgcatgcacacacactgaac 86203
>emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chromosome 10 Contains the 5' end of the SLIT1 gene for slit homolog 1 (Drosophila), a novel gene and a CpG island, complete sequence Length = 172510 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tggaggagcagtactgccaa 254 |||||||||||||||||||| Sbjct: 39310 tggaggagcagtactgccaa 39329
>emb|AL031119.1|HS28C20 Human DNA sequence from clone RP1-28C20 on chromosome 6q24 Contains the 3' end of a variant of the EPM2A gene for progressive myoclonus type 2 epilepsy (Lafora disease) protein (laforin) and a BTB/POZ domain zinc finger protein pseudogene, complete sequence Length = 115835 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgcatgcacagacactgaac 216 |||||||||||||||||||| Sbjct: 106284 tgcatgcacagacactgaac 106265
>gb|AC011424.4| Homo sapiens chromosome 5 clone P1_1242F12, complete sequence Length = 84991 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 aataaattaataattcatgctcca 33 |||| ||||||||||||||||||| Sbjct: 49447 aatagattaataattcatgctcca 49424
>gb|AC012368.6| Homo sapiens BAC clone RP11-547M24 from 2, complete sequence Length = 196206 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 cacatgcatgcacagacact 212 |||||||||||||||||||| Sbjct: 179733 cacatgcatgcacagacact 179714
>emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in linkage group 14, complete sequence Length = 179663 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cggttttacaggttcaatcc 77 |||||||||||||||||||| Sbjct: 113082 cggttttacaggttcaatcc 113101
>emb|CR847890.19| Zebrafish DNA sequence from clone DKEYP-70H9 in linkage group 14, complete sequence Length = 217550 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 acaataaattaataattcat 27 |||||||||||||||||||| Sbjct: 64381 acaataaattaataattcat 64400
>emb|BX005274.11| Zebrafish DNA sequence from clone DKEY-77B9 in linkage group 19, complete sequence Length = 165012 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gttgcattaaattattggcc 339 |||||||||||||||||||| Sbjct: 80678 gttgcattaaattattggcc 80697
>emb|CT030247.6| Mouse DNA sequence from clone RP23-340G24 on chromosome 9, complete sequence Length = 218753 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cacacaataaattaataatt 24 |||||||||||||||||||| Sbjct: 208348 cacacaataaattaataatt 208329
>gb|AC002209.1|AC002209 Homo sapiens (subclone 2_e10 from P1 H31) DNA sequence, complete sequence Length = 4858 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 aataaattaataattcatgctcca 33 |||| ||||||||||||||||||| Sbjct: 4251 aatagattaataattcatgctcca 4274
>emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on chromosome 2, complete sequence Length = 147002 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 acacaataaattaataattc 25 |||||||||||||||||||| Sbjct: 83233 acacaataaattaataattc 83214 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,112,878 Number of Sequences: 3902068 Number of extensions: 3112878 Number of successful extensions: 70047 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69968 Number of HSP's gapped (non-prelim): 79 length of query: 402 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 380 effective length of database: 17,147,199,772 effective search space: 6515935913360 effective search space used: 6515935913360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)